HEADER LIGASE 25-JAN-12 4DG8 TITLE STRUCTURE OF PA1221, AN NRPS PROTEIN CONTAINING ADENYLATION AND PCP TITLE 2 DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PA1221; COMPND 3 CHAIN: A; COMPND 4 EC: 6.2.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PA01; SOURCE 5 GENE: PA1221; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET15BTEV; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15BTEVP21 KEYWDS ANL SUPERFAMILY, ADENYLATION DOMAIN, PEPTIDYL CARRIER PROTEIN, NON- KEYWDS 2 RIBOSOMAL PEPTIDE SYNTHETASE, NRPS, VALINE ADENYLATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR C.A.MITCHELL,C.SHI,C.C.ALDRICH,A.M.GULICK REVDAT 2 13-SEP-23 4DG8 1 REMARK SEQADV REVDAT 1 02-MAY-12 4DG8 0 JRNL AUTH C.A.MITCHELL,C.SHI,C.C.ALDRICH,A.M.GULICK JRNL TITL STRUCTURE OF PA1221, A NONRIBOSOMAL PEPTIDE SYNTHETASE JRNL TITL 2 CONTAINING ADENYLATION AND PEPTIDYL CARRIER PROTEIN DOMAINS. JRNL REF BIOCHEMISTRY V. 51 3252 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22452656 JRNL DOI 10.1021/BI300112E REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 36768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3826 - 5.0475 0.92 2894 148 0.1650 0.1590 REMARK 3 2 5.0475 - 4.0096 0.94 2817 135 0.1408 0.1653 REMARK 3 3 4.0096 - 3.5037 0.84 2459 118 0.1768 0.2332 REMARK 3 4 3.5037 - 3.1838 0.88 2526 160 0.1816 0.2635 REMARK 3 5 3.1838 - 2.9558 0.96 2785 162 0.1734 0.2144 REMARK 3 6 2.9558 - 2.7817 0.97 2779 138 0.1926 0.2578 REMARK 3 7 2.7817 - 2.6424 0.91 2586 161 0.2251 0.2769 REMARK 3 8 2.6424 - 2.5275 0.97 2777 144 0.2066 0.2535 REMARK 3 9 2.5275 - 2.4302 0.97 2773 143 0.1880 0.2279 REMARK 3 10 2.4302 - 2.3464 0.98 2794 147 0.1973 0.2766 REMARK 3 11 2.3464 - 2.2731 0.97 2776 122 0.2535 0.2953 REMARK 3 12 2.2731 - 2.2081 0.77 2169 142 0.3633 0.5066 REMARK 3 13 2.2081 - 2.1500 0.98 2771 142 0.2318 0.2876 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 35.52 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.650 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.45550 REMARK 3 B22 (A**2) : 2.45550 REMARK 3 B33 (A**2) : -4.91110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3890 REMARK 3 ANGLE : 1.270 5302 REMARK 3 CHIRALITY : 0.095 602 REMARK 3 PLANARITY : 0.007 698 REMARK 3 DIHEDRAL : 12.669 1413 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 15:48) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8141 13.8941 36.1021 REMARK 3 T TENSOR REMARK 3 T11: 0.0829 T22: 0.2817 REMARK 3 T33: 0.1040 T12: 0.0669 REMARK 3 T13: 0.0120 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 4.2895 L22: 6.0819 REMARK 3 L33: 1.0640 L12: 3.7656 REMARK 3 L13: -0.8716 L23: -1.6138 REMARK 3 S TENSOR REMARK 3 S11: 0.0834 S12: -0.4726 S13: 0.1220 REMARK 3 S21: 0.4589 S22: -0.2086 S23: 0.0343 REMARK 3 S31: -0.0534 S32: 0.3162 S33: 0.0900 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 49:85) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5210 4.3074 24.6547 REMARK 3 T TENSOR REMARK 3 T11: 0.1744 T22: 0.1622 REMARK 3 T33: 0.2208 T12: 0.0362 REMARK 3 T13: 0.0489 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 2.8732 L22: 2.1928 REMARK 3 L33: 2.8441 L12: 2.0256 REMARK 3 L13: -1.8063 L23: -1.6361 REMARK 3 S TENSOR REMARK 3 S11: -0.2465 S12: -0.0767 S13: -0.5772 REMARK 3 S21: 0.0815 S22: 0.0495 S23: -0.2723 REMARK 3 S31: 0.1229 S32: 0.0495 S33: 0.2187 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 86:156) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1133 6.3594 15.4900 REMARK 3 T TENSOR REMARK 3 T11: 0.0897 T22: 0.1559 REMARK 3 T33: 0.1472 T12: -0.0218 REMARK 3 T13: 0.0368 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 1.2903 L22: 2.6198 REMARK 3 L33: 4.6613 L12: 0.6047 REMARK 3 L13: -0.2750 L23: -0.4007 REMARK 3 S TENSOR REMARK 3 S11: -0.1316 S12: 0.2282 S13: -0.2040 REMARK 3 S21: -0.1308 S22: 0.0895 S23: -0.0281 REMARK 3 S31: 0.3732 S32: -0.1859 S33: 0.0021 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 157:388) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0110 25.4069 26.9092 REMARK 3 T TENSOR REMARK 3 T11: 0.1117 T22: 0.1435 REMARK 3 T33: 0.1014 T12: 0.0031 REMARK 3 T13: -0.0073 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.8820 L22: 1.1090 REMARK 3 L33: 0.9995 L12: -0.0972 REMARK 3 L13: -0.1124 L23: 0.0077 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: -0.0189 S13: 0.2720 REMARK 3 S21: -0.0561 S22: 0.0453 S23: 0.0183 REMARK 3 S31: -0.0806 S32: -0.0365 S33: -0.0216 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 389:437) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0784 35.2916 16.5311 REMARK 3 T TENSOR REMARK 3 T11: 0.2168 T22: 0.1744 REMARK 3 T33: 0.2890 T12: -0.0132 REMARK 3 T13: -0.0205 T23: 0.0982 REMARK 3 L TENSOR REMARK 3 L11: 2.6128 L22: 1.6209 REMARK 3 L33: 2.1071 L12: -0.0682 REMARK 3 L13: -1.1259 L23: 0.9087 REMARK 3 S TENSOR REMARK 3 S11: 0.0067 S12: 0.4133 S13: 0.4391 REMARK 3 S21: -0.0725 S22: 0.0238 S23: 0.0217 REMARK 3 S31: -0.1961 S32: -0.2936 S33: -0.0016 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 438:481) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5360 22.7945 -1.5363 REMARK 3 T TENSOR REMARK 3 T11: 0.2927 T22: 0.7326 REMARK 3 T33: 0.2573 T12: -0.0097 REMARK 3 T13: 0.0375 T23: 0.0487 REMARK 3 L TENSOR REMARK 3 L11: 0.9947 L22: 4.4697 REMARK 3 L33: 2.0428 L12: -1.0743 REMARK 3 L13: 1.3969 L23: -1.0043 REMARK 3 S TENSOR REMARK 3 S11: 0.3319 S12: 0.7165 S13: -0.0659 REMARK 3 S21: -0.1057 S22: -0.1354 S23: 0.4383 REMARK 3 S31: 0.2133 S32: -0.5440 S33: -0.1603 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 482:511) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1483 29.0381 -2.5058 REMARK 3 T TENSOR REMARK 3 T11: 0.4629 T22: 0.7998 REMARK 3 T33: 0.5368 T12: 0.1563 REMARK 3 T13: -0.0677 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 5.6929 L22: 5.9185 REMARK 3 L33: 4.2407 L12: -3.0091 REMARK 3 L13: 0.1993 L23: 0.2686 REMARK 3 S TENSOR REMARK 3 S11: 0.1076 S12: 0.6486 S13: 0.1248 REMARK 3 S21: -0.2733 S22: -0.3553 S23: 0.9900 REMARK 3 S31: -1.0827 S32: -0.8453 S33: 0.2856 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DG8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070289. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SSRL. REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36771 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1AMU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5-4 % PEG8000, 50 MM MES, 100 MM REMARK 280 GLYCINE, 1 MM ATP, 1 MM VALINE, PH 6.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.19550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.28250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.28250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.29325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.28250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.28250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.09775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.28250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.28250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 123.29325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.28250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.28250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.09775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.19550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 PHE A 4 REMARK 465 PHE A 5 REMARK 465 ARG A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 ALA A 9 REMARK 465 ILE A 10 REMARK 465 VAL A 11 REMARK 465 ARG A 12 REMARK 465 MET A 13 REMARK 465 SER A 14 REMARK 465 ALA A 496 REMARK 465 HIS A 497 REMARK 465 GLY A 498 REMARK 465 LYS A 499 REMARK 465 GLU A 514 REMARK 465 ARG A 515 REMARK 465 CYS A 516 REMARK 465 ALA A 517 REMARK 465 SER A 518 REMARK 465 ALA A 519 REMARK 465 LEU A 520 REMARK 465 ASP A 521 REMARK 465 PRO A 522 REMARK 465 ASP A 523 REMARK 465 GLN A 524 REMARK 465 ARG A 525 REMARK 465 GLY A 526 REMARK 465 CYS A 527 REMARK 465 ALA A 528 REMARK 465 GLN A 529 REMARK 465 LEU A 530 REMARK 465 TRP A 531 REMARK 465 SER A 532 REMARK 465 GLU A 533 REMARK 465 LEU A 534 REMARK 465 LEU A 535 REMARK 465 GLY A 536 REMARK 465 CYS A 537 REMARK 465 GLU A 538 REMARK 465 VAL A 539 REMARK 465 GLY A 540 REMARK 465 ALA A 541 REMARK 465 ALA A 542 REMARK 465 ASP A 543 REMARK 465 GLN A 544 REMARK 465 ASP A 545 REMARK 465 PHE A 546 REMARK 465 PHE A 547 REMARK 465 LEU A 548 REMARK 465 CYS A 549 REMARK 465 GLY A 550 REMARK 465 GLY A 551 REMARK 465 ASN A 552 REMARK 465 SER A 553 REMARK 465 LEU A 554 REMARK 465 LEU A 555 REMARK 465 ALA A 556 REMARK 465 LEU A 557 REMARK 465 GLN A 558 REMARK 465 LEU A 559 REMARK 465 VAL A 560 REMARK 465 ALA A 561 REMARK 465 LEU A 562 REMARK 465 CYS A 563 REMARK 465 GLN A 564 REMARK 465 SER A 565 REMARK 465 ALA A 566 REMARK 465 GLY A 567 REMARK 465 ALA A 568 REMARK 465 GLY A 569 REMARK 465 ALA A 570 REMARK 465 ASN A 571 REMARK 465 LEU A 572 REMARK 465 GLY A 573 REMARK 465 LEU A 574 REMARK 465 ALA A 575 REMARK 465 ASP A 576 REMARK 465 LEU A 577 REMARK 465 GLN A 578 REMARK 465 ALA A 579 REMARK 465 ASN A 580 REMARK 465 SER A 581 REMARK 465 ARG A 582 REMARK 465 LEU A 583 REMARK 465 ASP A 584 REMARK 465 GLN A 585 REMARK 465 PHE A 586 REMARK 465 SER A 587 REMARK 465 ARG A 588 REMARK 465 LEU A 589 REMARK 465 LEU A 590 REMARK 465 ARG A 591 REMARK 465 SER A 592 REMARK 465 HIS A 593 REMARK 465 GLY A 594 REMARK 465 LEU A 595 REMARK 465 ALA A 596 REMARK 465 PRO A 597 REMARK 465 GLU A 598 REMARK 465 ARG A 599 REMARK 465 LEU A 600 REMARK 465 LEU A 601 REMARK 465 GLU A 602 REMARK 465 ARG A 603 REMARK 465 ALA A 604 REMARK 465 ALA A 605 REMARK 465 THR A 606 REMARK 465 PRO A 607 REMARK 465 GLU A 608 REMARK 465 GLN A 609 REMARK 465 PRO A 610 REMARK 465 LEU A 611 REMARK 465 VAL A 612 REMARK 465 LEU A 613 REMARK 465 SER A 614 REMARK 465 ARG A 615 REMARK 465 SER A 616 REMARK 465 ALA A 617 REMARK 465 ALA A 618 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 15 CG CD OE1 NE2 REMARK 470 ASN A 16 CG OD1 ND2 REMARK 470 ARG A 54 CD NE CZ NH1 NH2 REMARK 470 LYS A 108 CD CE NZ REMARK 470 THR A 134 CB REMARK 470 ARG A 391 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 443 CG CD1 CD2 REMARK 470 LYS A 465 CG CD CE NZ REMARK 470 GLU A 490 CG CD OE1 OE2 REMARK 470 LEU A 494 CG CD1 CD2 REMARK 470 ARG A 502 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 510 CG CD OE1 OE2 REMARK 470 GLU A 511 CG CD OE1 OE2 REMARK 470 PRO A 512 CG CD REMARK 470 LEU A 513 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 854 O HOH A 1009 2.09 REMARK 500 NH1 ARG A 250 O HOH A 898 2.12 REMARK 500 OD2 ASP A 284 O HOH A 1009 2.17 REMARK 500 NH2 ARG A 250 O HOH A 1030 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 959 O HOH A 987 6555 2.04 REMARK 500 NH2 ARG A 277 O HOH A 852 8555 2.06 REMARK 500 O HOH A 959 O HOH A 988 6555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 16 73.55 55.66 REMARK 500 SER A 17 -12.96 91.08 REMARK 500 THR A 174 -155.57 52.12 REMARK 500 ASN A 208 -52.20 -133.86 REMARK 500 ASP A 269 77.96 -152.26 REMARK 500 THR A 313 79.82 62.58 REMARK 500 THR A 314 -91.26 73.67 REMARK 500 ARG A 389 -118.76 53.18 REMARK 500 ILE A 413 -60.57 -103.38 REMARK 500 ASN A 453 -128.38 55.13 REMARK 500 GLU A 511 65.75 62.13 REMARK 500 PRO A 512 -12.13 67.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 703 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DG9 RELATED DB: PDB DBREF 4DG8 A 1 618 UNP Q9I4B7 Q9I4B7_PSEAE 1 618 SEQADV 4DG8 GLY A -1 UNP Q9I4B7 EXPRESSION TAG SEQADV 4DG8 HIS A 0 UNP Q9I4B7 EXPRESSION TAG SEQRES 1 A 620 GLY HIS MET ASP SER PHE PHE ARG LYS LYS ALA ILE VAL SEQRES 2 A 620 ARG MET SER GLN ASN SER LEU LEU ASP LEU TYR ALA HIS SEQRES 3 A 620 PRO THR VAL VAL ALA ARG PHE SER GLU MET ALA ALA LEU SEQRES 4 A 620 HIS PRO HIS ARG GLU ALA ILE ARG ASP ARG PHE GLY SER SEQRES 5 A 620 VAL ASP TYR ARG GLN LEU LEU ASP SER ALA GLU GLN LEU SEQRES 6 A 620 SER ASP TYR LEU LEU GLU HIS TYR PRO GLN PRO GLY VAL SEQRES 7 A 620 CYS LEU GLY VAL TYR GLY GLU TYR SER ARG GLU SER ILE SEQRES 8 A 620 THR CYS LEU LEU ALA ILE LEU LEU SER GLY HIS HIS TYR SEQRES 9 A 620 LEU TYR ILE ASP LEU LYS GLN PRO ALA ALA TRP ASN ALA SEQRES 10 A 620 GLU LEU CYS ARG GLN VAL ASP CYS ARG LEU ILE LEU ASP SEQRES 11 A 620 CYS SER THR THR PRO THR PRO ALA ASN GLY LEU PRO CYS SEQRES 12 A 620 VAL PRO VAL ARG HIS LEU PRO ALA ALA PRO ALA SER VAL SEQRES 13 A 620 ALA ARG PRO CYS PHE ALA ALA ASP GLN ILE ALA TYR ILE SEQRES 14 A 620 ASN PHE SER SER GLY THR THR GLY ARG PRO LYS ALA ILE SEQRES 15 A 620 ALA CYS THR HIS ALA GLY ILE THR ARG LEU CYS LEU GLY SEQRES 16 A 620 GLN SER PHE LEU ALA PHE ALA PRO GLN MET ARG PHE LEU SEQRES 17 A 620 VAL ASN SER PRO LEU SER PHE ASP ALA ALA THR LEU GLU SEQRES 18 A 620 ILE TRP GLY ALA LEU LEU ASN GLY GLY CYS CYS VAL LEU SEQRES 19 A 620 ASN ASP LEU GLY PRO LEU ASP PRO GLY VAL LEU ARG GLN SEQRES 20 A 620 LEU ILE GLY GLU ARG GLY ALA ASP SER ALA TRP LEU THR SEQRES 21 A 620 ALA SER LEU PHE ASN THR LEU VAL ASP LEU ASP PRO ASP SEQRES 22 A 620 CYS LEU GLY GLY LEU ARG GLN LEU LEU THR GLY GLY ASP SEQRES 23 A 620 ILE LEU SER VAL PRO HIS VAL ARG ARG ALA LEU LEU ARG SEQRES 24 A 620 HIS PRO ARG LEU HIS LEU VAL ASN GLY TYR GLY PRO THR SEQRES 25 A 620 GLU ASN THR THR PHE THR CYS CYS HIS VAL VAL THR ASP SEQRES 26 A 620 ASP ASP LEU GLU GLU ASP ASP ILE PRO ILE GLY LYS ALA SEQRES 27 A 620 ILE ALA GLY THR ALA VAL LEU LEU LEU ASP GLU HIS GLY SEQRES 28 A 620 GLN GLU ILE ALA GLU PRO ASP ARG ALA GLY GLU ILE VAL SEQRES 29 A 620 ALA PHE GLY ALA GLY LEU ALA GLN GLY TYR ARG ASN ASP SEQRES 30 A 620 ALA ALA ARG THR ARG ALA SER PHE VAL GLU LEU PRO TYR SEQRES 31 A 620 ARG GLY ARG LEU LEU ARG ALA TYR ARG THR GLY ASP ARG SEQRES 32 A 620 ALA ARG TYR ASP GLU GLN GLY ARG LEU ARG PHE ILE GLY SEQRES 33 A 620 ARG GLY ASP GLY GLN VAL LYS LEU ASN GLY TYR ARG LEU SEQRES 34 A 620 ASP LEU PRO ALA LEU GLU GLN ARG PHE ARG ARG GLN PRO SEQRES 35 A 620 GLY ILE LEU ASP CYS ALA LEU LEU VAL ARG GLU ARG ASN SEQRES 36 A 620 GLY VAL LYS GLN LEU LEU CYS ALA TRP THR GLY LYS ALA SEQRES 37 A 620 ASP ALA SER PRO GLN ALA LEU LEU ARG GLN LEU PRO THR SEQRES 38 A 620 TRP GLN ARG PRO HIS ALA CYS VAL ARG VAL GLU ALA LEU SEQRES 39 A 620 PRO LEU THR ALA HIS GLY LYS LEU ASP ARG ALA ALA LEU SEQRES 40 A 620 LEU ARG ARG LEU GLU GLU PRO LEU GLU ARG CYS ALA SER SEQRES 41 A 620 ALA LEU ASP PRO ASP GLN ARG GLY CYS ALA GLN LEU TRP SEQRES 42 A 620 SER GLU LEU LEU GLY CYS GLU VAL GLY ALA ALA ASP GLN SEQRES 43 A 620 ASP PHE PHE LEU CYS GLY GLY ASN SER LEU LEU ALA LEU SEQRES 44 A 620 GLN LEU VAL ALA LEU CYS GLN SER ALA GLY ALA GLY ALA SEQRES 45 A 620 ASN LEU GLY LEU ALA ASP LEU GLN ALA ASN SER ARG LEU SEQRES 46 A 620 ASP GLN PHE SER ARG LEU LEU ARG SER HIS GLY LEU ALA SEQRES 47 A 620 PRO GLU ARG LEU LEU GLU ARG ALA ALA THR PRO GLU GLN SEQRES 48 A 620 PRO LEU VAL LEU SER ARG SER ALA ALA HET AMP A 701 23 HET BU3 A 702 6 HET BU3 A 703 6 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM BU3 (R,R)-2,3-BUTANEDIOL FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 BU3 2(C4 H10 O2) FORMUL 5 HOH *245(H2 O) HELIX 1 1 ASP A 20 HIS A 24 5 5 HELIX 2 2 THR A 26 HIS A 38 1 13 HELIX 3 3 TYR A 53 TYR A 71 1 19 HELIX 4 4 SER A 85 SER A 98 1 14 HELIX 5 5 PRO A 110 ASP A 122 1 13 HELIX 6 6 ARG A 145 LEU A 147 5 3 HELIX 7 7 HIS A 184 LEU A 192 1 9 HELIX 8 8 GLN A 194 ALA A 198 5 5 HELIX 9 9 ASP A 214 LEU A 225 1 12 HELIX 10 10 ASP A 239 GLU A 249 1 11 HELIX 11 11 ALA A 259 ASP A 269 1 11 HELIX 12 12 PRO A 270 GLY A 274 5 5 HELIX 13 13 SER A 287 HIS A 298 1 12 HELIX 14 14 PRO A 309 THR A 313 5 5 HELIX 15 15 ASP A 323 GLU A 328 5 6 HELIX 16 16 ASP A 375 SER A 382 1 8 HELIX 17 17 LEU A 429 ARG A 438 1 10 HELIX 18 18 PRO A 470 LEU A 477 1 8 HELIX 19 19 PRO A 478 ARG A 482 5 5 HELIX 20 20 ASP A 501 LEU A 509 1 9 SHEET 1 A 4 GLY A 49 ASP A 52 0 SHEET 2 A 4 GLU A 42 ASP A 46 -1 N ASP A 46 O GLY A 49 SHEET 3 A 4 CYS A 229 LEU A 232 1 O CYS A 230 N ARG A 45 SHEET 4 A 4 ARG A 204 VAL A 207 1 N PHE A 205 O VAL A 231 SHEET 1 B 4 HIS A 101 TYR A 104 0 SHEET 2 B 4 CYS A 77 TYR A 81 1 N LEU A 78 O HIS A 101 SHEET 3 B 4 CYS A 123 ASP A 128 1 O LEU A 127 N GLY A 79 SHEET 4 B 4 CYS A 141 PRO A 143 1 O VAL A 142 N ASP A 128 SHEET 1 C 3 ILE A 164 SER A 170 0 SHEET 2 C 3 LYS A 178 THR A 183 -1 O LYS A 178 N SER A 170 SHEET 3 C 3 GLY A 371 TYR A 372 -1 O GLY A 371 N ALA A 181 SHEET 1 D 5 SER A 254 THR A 258 0 SHEET 2 D 5 GLN A 278 GLY A 282 1 O LEU A 280 N ALA A 255 SHEET 3 D 5 HIS A 302 TYR A 307 1 O GLY A 306 N THR A 281 SHEET 4 D 5 CYS A 317 VAL A 320 -1 O CYS A 317 N TYR A 307 SHEET 5 D 5 LYS A 335 ALA A 336 -1 O LYS A 335 N CYS A 318 SHEET 1 E 4 THR A 340 LEU A 345 0 SHEET 2 E 4 GLY A 359 GLY A 365 -1 O GLU A 360 N LEU A 345 SHEET 3 E 4 ARG A 391 TYR A 404 -1 O ASP A 400 N ILE A 361 SHEET 4 E 4 PHE A 383 TYR A 388 -1 N LEU A 386 O LEU A 393 SHEET 1 F 4 THR A 340 LEU A 345 0 SHEET 2 F 4 GLY A 359 GLY A 365 -1 O GLU A 360 N LEU A 345 SHEET 3 F 4 ARG A 391 TYR A 404 -1 O ASP A 400 N ILE A 361 SHEET 4 F 4 LEU A 410 GLY A 414 -1 O ILE A 413 N ARG A 401 SHEET 1 G 2 GLN A 419 LEU A 422 0 SHEET 2 G 2 TYR A 425 ASP A 428 -1 O TYR A 425 N LEU A 422 SHEET 1 H 3 ILE A 442 ARG A 452 0 SHEET 2 H 3 VAL A 455 GLY A 464 -1 O THR A 463 N LEU A 443 SHEET 3 H 3 ALA A 485 ARG A 488 1 O VAL A 487 N CYS A 460 CISPEP 1 GLN A 15 ASN A 16 0 14.07 CISPEP 2 GLU A 510 GLU A 511 0 -9.03 SITE 1 AC1 22 GLY A 282 GLY A 283 ASP A 284 ILE A 285 SITE 2 AC1 22 ASN A 305 GLY A 306 TYR A 307 GLY A 308 SITE 3 AC1 22 PRO A 309 THR A 310 ASP A 400 PHE A 412 SITE 4 AC1 22 LYS A 421 ARG A 426 BU3 A 702 HOH A 833 SITE 5 AC1 22 HOH A 861 HOH A 920 HOH A 973 HOH A 991 SITE 6 AC1 22 HOH A1008 HOH A1043 SITE 1 AC2 5 GLY A 283 LYS A 421 AMP A 701 HOH A 919 SITE 2 AC2 5 HOH A1024 SITE 1 AC3 5 SER A 209 TRP A 256 THR A 258 HOH A 844 SITE 2 AC3 5 HOH A 986 CRYST1 92.565 92.565 164.391 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010803 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010803 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006083 0.00000