HEADER TRANSPORT PROTEIN 25-JAN-12 4DGF TITLE STRUCTURE OF SULP TRANSPORTER STAS DOMAIN FROM WOLINELLA SUCCINOGENES TITLE 2 REFINED TO 1.6 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFATE TRANSPORTER SULFATE TRANSPORTER FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: WOLINELLA SUCCINOGENES; SOURCE 3 ORGANISM_TAXID: 844; SOURCE 4 GENE: YCHM, WS0651; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STAS DOMAIN, ANION EXCHANGE, MEMBRANE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.P.KELLER,C.CHANG,C.TESAR,J.BEARDEN,P.DALLOS,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 1 08-FEB-12 4DGF 0 JRNL AUTH J.P.KELLER,C.CHANG,P.DALLOS,A.JOACHIMIAK JRNL TITL STRUCTURE OF SULP TRANSPORTER STAS DOMAIN FROM WOLINELLA JRNL TITL 2 SUCCINOGENES REFINED TO 1.6 ANGSTROM RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : -1000.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 36859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1944 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2344 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1945 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.80000 REMARK 3 B22 (A**2) : 0.89000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.301 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2180 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2975 ; 2.177 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 287 ; 5.323 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;35.507 ;23.939 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 362 ;14.458 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.212 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 330 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1696 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 440 A 561 REMARK 3 ORIGIN FOR THE GROUP (A): -23.7227 15.1483 -34.7409 REMARK 3 T TENSOR REMARK 3 T11: 0.0258 T22: 0.0219 REMARK 3 T33: 0.0204 T12: -0.0063 REMARK 3 T13: 0.0015 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 1.2727 L22: 0.1282 REMARK 3 L33: 0.8678 L12: -0.0894 REMARK 3 L13: 0.3352 L23: -0.3146 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: 0.1077 S13: -0.0140 REMARK 3 S21: 0.0220 S22: -0.0015 S23: 0.0001 REMARK 3 S31: -0.0095 S32: -0.0022 S33: 0.0008 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 438 B 562 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1809 18.1502 -14.6898 REMARK 3 T TENSOR REMARK 3 T11: 0.0199 T22: 0.0211 REMARK 3 T33: 0.0222 T12: 0.0122 REMARK 3 T13: 0.0070 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.9029 L22: 0.0816 REMARK 3 L33: 0.8645 L12: 0.1014 REMARK 3 L13: -0.2157 L23: -0.2560 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: -0.0714 S13: -0.0433 REMARK 3 S21: -0.0053 S22: -0.0134 S23: -0.0018 REMARK 3 S31: -0.0085 S32: 0.0089 S33: -0.0111 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4DGF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-12. REMARK 100 THE RCSB ID CODE IS RCSB070296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38860 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1000.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 1.20100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60% TACSIMATE PH 7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.93250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.78500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.93250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.78500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 431 REMARK 465 ASN A 432 REMARK 465 ALA A 433 REMARK 465 ASP A 434 REMARK 465 GLY A 435 REMARK 465 LEU A 436 REMARK 465 GLU A 437 REMARK 465 GLY A 438 REMARK 465 MSE A 439 REMARK 465 ALA A 562 REMARK 465 GLU A 563 REMARK 465 GLU A 564 REMARK 465 ARG A 565 REMARK 465 SER B 431 REMARK 465 ASN B 432 REMARK 465 ALA B 433 REMARK 465 ASP B 434 REMARK 465 GLY B 435 REMARK 465 LEU B 436 REMARK 465 GLU B 437 REMARK 465 GLU B 563 REMARK 465 GLU B 564 REMARK 465 ARG B 565 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 479 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 505 O HOH B 783 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 466 N GLY A 466 CA 0.093 REMARK 500 GLY B 466 N GLY B 466 CA 0.099 REMARK 500 HIS B 547 CG HIS B 547 CD2 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 470 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP A 549 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 525 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 464 -151.16 -115.58 REMARK 500 ASP A 496 -165.46 -103.37 REMARK 500 PHE B 464 -153.35 -115.62 REMARK 500 ASP B 496 -167.87 -107.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DGH RELATED DB: PDB REMARK 900 RELATED ID: 3OIR RELATED DB: PDB REMARK 900 RELATED ID: APC36770.3 RELATED DB: TARGETTRACK DBREF 4DGF A 434 565 UNP Q7M9V0 Q7M9V0_WOLSU 434 565 DBREF 4DGF B 434 565 UNP Q7M9V0 Q7M9V0_WOLSU 434 565 SEQADV 4DGF SER A 431 UNP Q7M9V0 EXPRESSION TAG SEQADV 4DGF ASN A 432 UNP Q7M9V0 EXPRESSION TAG SEQADV 4DGF ALA A 433 UNP Q7M9V0 EXPRESSION TAG SEQADV 4DGF SER B 431 UNP Q7M9V0 EXPRESSION TAG SEQADV 4DGF ASN B 432 UNP Q7M9V0 EXPRESSION TAG SEQADV 4DGF ALA B 433 UNP Q7M9V0 EXPRESSION TAG SEQRES 1 A 135 SER ASN ALA ASP GLY LEU GLU GLY MSE ASP ASP PRO ASP SEQRES 2 A 135 ALA THR SER LYS LYS VAL VAL PRO LEU GLY VAL GLU ILE SEQRES 3 A 135 TYR GLU ILE ASN GLY PRO PHE PHE PHE GLY VAL ALA ASP SEQRES 4 A 135 ARG LEU LYS GLY VAL LEU ASP VAL ILE GLU GLU THR PRO SEQRES 5 A 135 LYS VAL PHE ILE LEU ARG MSE ARG ARG VAL PRO VAL ILE SEQRES 6 A 135 ASP ALA THR GLY MSE HIS ALA LEU TRP GLU PHE GLN GLU SEQRES 7 A 135 SER CYS GLU LYS ARG GLY THR ILE LEU LEU LEU SER GLY SEQRES 8 A 135 VAL SER ASP ARG LEU TYR GLY ALA LEU ASN ARG PHE GLY SEQRES 9 A 135 PHE ILE GLU ALA LEU GLY GLU GLU ARG VAL PHE ASP HIS SEQRES 10 A 135 ILE ASP LYS ALA LEU ALA TYR ALA LYS LEU LEU VAL GLU SEQRES 11 A 135 THR ALA GLU GLU ARG SEQRES 1 B 135 SER ASN ALA ASP GLY LEU GLU GLY MSE ASP ASP PRO ASP SEQRES 2 B 135 ALA THR SER LYS LYS VAL VAL PRO LEU GLY VAL GLU ILE SEQRES 3 B 135 TYR GLU ILE ASN GLY PRO PHE PHE PHE GLY VAL ALA ASP SEQRES 4 B 135 ARG LEU LYS GLY VAL LEU ASP VAL ILE GLU GLU THR PRO SEQRES 5 B 135 LYS VAL PHE ILE LEU ARG MSE ARG ARG VAL PRO VAL ILE SEQRES 6 B 135 ASP ALA THR GLY MSE HIS ALA LEU TRP GLU PHE GLN GLU SEQRES 7 B 135 SER CYS GLU LYS ARG GLY THR ILE LEU LEU LEU SER GLY SEQRES 8 B 135 VAL SER ASP ARG LEU TYR GLY ALA LEU ASN ARG PHE GLY SEQRES 9 B 135 PHE ILE GLU ALA LEU GLY GLU GLU ARG VAL PHE ASP HIS SEQRES 10 B 135 ILE ASP LYS ALA LEU ALA TYR ALA LYS LEU LEU VAL GLU SEQRES 11 B 135 THR ALA GLU GLU ARG MODRES 4DGF MSE A 489 MET SELENOMETHIONINE MODRES 4DGF MSE A 500 MET SELENOMETHIONINE MODRES 4DGF MSE B 439 MET SELENOMETHIONINE MODRES 4DGF MSE B 489 MET SELENOMETHIONINE MODRES 4DGF MSE B 500 MET SELENOMETHIONINE HET MSE A 489 16 HET MSE A 500 8 HET MSE B 439 16 HET MSE B 489 16 HET MSE B 500 8 HET CL A 601 1 HET FMT A 602 3 HET CL B 601 1 HET FMT B 602 3 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM FMT FORMIC ACID FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 3 CL 2(CL 1-) FORMUL 4 FMT 2(C H2 O2) FORMUL 7 HOH *162(H2 O) HELIX 1 1 ALA A 444 LYS A 448 5 5 HELIX 2 2 PHE A 464 LYS A 472 1 9 HELIX 3 3 GLY A 473 ILE A 478 5 6 HELIX 4 4 ASP A 496 ARG A 513 1 18 HELIX 5 5 SER A 523 PHE A 533 1 11 HELIX 6 6 GLY A 534 GLY A 540 1 7 HELIX 7 7 GLU A 541 VAL A 544 5 4 HELIX 8 8 HIS A 547 THR A 561 1 15 HELIX 9 9 ALA B 444 LYS B 448 5 5 HELIX 10 10 PHE B 464 LYS B 472 1 9 HELIX 11 11 VAL B 474 ILE B 478 5 5 HELIX 12 12 ASP B 496 GLY B 514 1 19 HELIX 13 13 SER B 523 PHE B 533 1 11 HELIX 14 14 GLY B 534 GLY B 540 1 7 HELIX 15 15 GLU B 541 VAL B 544 5 4 HELIX 16 16 HIS B 547 GLU B 560 1 14 SHEET 1 A 3 VAL A 454 GLU A 458 0 SHEET 2 A 3 VAL A 484 ARG A 488 1 O ILE A 486 N GLU A 455 SHEET 3 A 3 ILE A 516 SER A 520 1 O LEU A 518 N LEU A 487 SHEET 1 B 3 VAL B 454 GLU B 458 0 SHEET 2 B 3 VAL B 484 ARG B 488 1 O ARG B 488 N TYR B 457 SHEET 3 B 3 ILE B 516 SER B 520 1 O SER B 520 N LEU B 487 LINK C ARG A 488 N AMSE A 489 1555 1555 1.33 LINK C ARG A 488 N BMSE A 489 1555 1555 1.33 LINK C AMSE A 489 N ARG A 490 1555 1555 1.33 LINK C BMSE A 489 N ARG A 490 1555 1555 1.33 LINK C GLY A 499 N MSE A 500 1555 1555 1.35 LINK C MSE A 500 N HIS A 501 1555 1555 1.34 LINK C GLY B 438 N AMSE B 439 1555 1555 1.33 LINK C GLY B 438 N BMSE B 439 1555 1555 1.33 LINK C AMSE B 439 N ASP B 440 1555 1555 1.34 LINK C BMSE B 439 N ASP B 440 1555 1555 1.34 LINK C ARG B 488 N AMSE B 489 1555 1555 1.33 LINK C ARG B 488 N BMSE B 489 1555 1555 1.34 LINK C AMSE B 489 N ARG B 490 1555 1555 1.33 LINK C BMSE B 489 N ARG B 490 1555 1555 1.33 LINK C GLY B 499 N MSE B 500 1555 1555 1.34 LINK C MSE B 500 N HIS B 501 1555 1555 1.35 SITE 1 AC1 6 ARG A 488 MSE A 489 ARG A 490 SER A 520 SITE 2 AC1 6 GLY A 521 HOH A 720 SITE 1 AC2 5 TYR A 457 GLU A 458 ILE A 459 ASN A 460 SITE 2 AC2 5 ARG A 470 SITE 1 AC3 5 ARG B 488 ARG B 490 SER B 520 GLY B 521 SITE 2 AC3 5 HOH B 728 SITE 1 AC4 4 TYR B 457 GLU B 458 ASN B 460 ARG B 470 CRYST1 37.710 71.865 105.570 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026518 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009472 0.00000