HEADER TRANSFERASE/TRANSFERASE INHIBITOR 26-JAN-12 4DGM TITLE CRYSTAL STRUCTURE OF MAIZE CK2 IN COMPLEX WITH THE INHIBITOR APIGENIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASEIN KINASE II SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CK II, CK2-ALPHA; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 GENE: ACK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.LOLLI,M.MAZZORANA,R.BATTISTUTTA REVDAT 4 28-FEB-24 4DGM 1 REMARK SEQADV REVDAT 3 02-JAN-13 4DGM 1 JRNL REVDAT 2 05-SEP-12 4DGM 1 JRNL REVDAT 1 01-AUG-12 4DGM 0 JRNL AUTH G.LOLLI,G.COZZA,M.MAZZORANA,E.TIBALDI,L.CESARO, JRNL AUTH 2 A.DONELLA-DEANA,F.MEGGIO,A.VENERANDO,C.FRANCHIN,S.SARNO, JRNL AUTH 3 R.BATTISTUTTA,L.A.PINNA JRNL TITL INHIBITION OF PROTEIN KINASE CK2 BY FLAVONOIDS AND JRNL TITL 2 TYRPHOSTINS. A STRUCTURAL INSIGHT. JRNL REF BIOCHEMISTRY V. 51 6097 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22794353 JRNL DOI 10.1021/BI300531C REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 45014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2263 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3122 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2723 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.91000 REMARK 3 B22 (A**2) : -17.84000 REMARK 3 B33 (A**2) : 18.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -18.85000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.023 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.599 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2865 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3874 ; 1.362 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 337 ; 5.254 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;37.071 ;23.986 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 516 ;14.053 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.553 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 406 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2187 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8109 7.8203 11.1476 REMARK 3 T TENSOR REMARK 3 T11: 0.0648 T22: 0.2222 REMARK 3 T33: 0.1985 T12: 0.0090 REMARK 3 T13: -0.0175 T23: -0.0773 REMARK 3 L TENSOR REMARK 3 L11: 2.6067 L22: 1.4437 REMARK 3 L33: 2.2680 L12: 1.2277 REMARK 3 L13: 1.3384 L23: 0.0496 REMARK 3 S TENSOR REMARK 3 S11: -0.1297 S12: 0.1622 S13: -0.0716 REMARK 3 S21: 0.0688 S22: 0.0750 S23: -0.2963 REMARK 3 S31: -0.3278 S32: 0.2115 S33: 0.0548 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 185 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6360 -13.6213 9.1484 REMARK 3 T TENSOR REMARK 3 T11: 0.0928 T22: 0.2643 REMARK 3 T33: 0.3969 T12: 0.0537 REMARK 3 T13: -0.1425 T23: -0.1285 REMARK 3 L TENSOR REMARK 3 L11: 2.2910 L22: 2.9735 REMARK 3 L33: 2.6085 L12: 0.7211 REMARK 3 L13: -0.0422 L23: -0.9592 REMARK 3 S TENSOR REMARK 3 S11: 0.0975 S12: -0.0407 S13: -0.5806 REMARK 3 S21: 0.1062 S22: 0.1754 S23: -0.6962 REMARK 3 S31: 0.3970 S32: 0.2487 S33: -0.2728 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 257 A 294 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5598 -21.3212 9.8579 REMARK 3 T TENSOR REMARK 3 T11: 0.2611 T22: 0.3647 REMARK 3 T33: 0.5011 T12: 0.0032 REMARK 3 T13: -0.1290 T23: -0.0606 REMARK 3 L TENSOR REMARK 3 L11: 1.2617 L22: 3.3565 REMARK 3 L33: 3.2237 L12: -0.7013 REMARK 3 L13: -0.4521 L23: 0.4007 REMARK 3 S TENSOR REMARK 3 S11: -0.1461 S12: 0.0029 S13: -0.5883 REMARK 3 S21: 0.0050 S22: 0.2166 S23: 0.0042 REMARK 3 S31: 0.5762 S32: -0.0708 S33: -0.0705 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 295 A 331 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6265 -6.1796 6.2386 REMARK 3 T TENSOR REMARK 3 T11: 0.0173 T22: 0.2635 REMARK 3 T33: 0.1075 T12: -0.0038 REMARK 3 T13: -0.0393 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 6.4504 L22: 3.5784 REMARK 3 L33: 3.4492 L12: -1.6651 REMARK 3 L13: -0.6821 L23: 0.1237 REMARK 3 S TENSOR REMARK 3 S11: 0.0402 S12: -0.0339 S13: -0.3294 REMARK 3 S21: 0.0802 S22: 0.3279 S23: -0.0101 REMARK 3 S31: 0.1283 S32: -0.2281 S33: -0.3681 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4DGM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45035 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 69.242 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : 0.44600 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 10-20% PEG 4000, 0.2 M REMARK 280 NA-ACETATE, PH 8, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.18150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.93750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.18150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.93750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 77 O HOH A 586 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 148 CG HIS A 148 CD2 0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 93 19.23 56.99 REMARK 500 ASP A 156 44.47 -149.29 REMARK 500 ASP A 175 77.66 51.43 REMARK 500 ALA A 193 153.47 60.81 REMARK 500 TYR A 234 75.80 -111.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGI A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DGO RELATED DB: PDB REMARK 900 RELATED ID: 4DGN RELATED DB: PDB DBREF 4DGM A 7 332 UNP P28523 CSK2A_MAIZE 2 327 SEQADV 4DGM MET A 89 UNP P28523 CYS 84 CONFLICT SEQRES 1 A 326 SER LYS ALA ARG VAL TYR ALA ASP VAL ASN VAL LEU ARG SEQRES 2 A 326 PRO LYS GLU TYR TRP ASP TYR GLU ALA LEU THR VAL GLN SEQRES 3 A 326 TRP GLY GLU GLN ASP ASP TYR GLU VAL VAL ARG LYS VAL SEQRES 4 A 326 GLY ARG GLY LYS TYR SER GLU VAL PHE GLU GLY ILE ASN SEQRES 5 A 326 VAL ASN ASN ASN GLU LYS CYS ILE ILE LYS ILE LEU LYS SEQRES 6 A 326 PRO VAL LYS LYS LYS LYS ILE LYS ARG GLU ILE LYS ILE SEQRES 7 A 326 LEU GLN ASN LEU MET GLY GLY PRO ASN ILE VAL LYS LEU SEQRES 8 A 326 LEU ASP ILE VAL ARG ASP GLN HIS SER LYS THR PRO SER SEQRES 9 A 326 LEU ILE PHE GLU TYR VAL ASN ASN THR ASP PHE LYS VAL SEQRES 10 A 326 LEU TYR PRO THR LEU THR ASP TYR ASP ILE ARG TYR TYR SEQRES 11 A 326 ILE TYR GLU LEU LEU LYS ALA LEU ASP TYR CYS HIS SER SEQRES 12 A 326 GLN GLY ILE MET HIS ARG ASP VAL LYS PRO HIS ASN VAL SEQRES 13 A 326 MET ILE ASP HIS GLU LEU ARG LYS LEU ARG LEU ILE ASP SEQRES 14 A 326 TRP GLY LEU ALA GLU PHE TYR HIS PRO GLY LYS GLU TYR SEQRES 15 A 326 ASN VAL ARG VAL ALA SER ARG TYR PHE LYS GLY PRO GLU SEQRES 16 A 326 LEU LEU VAL ASP LEU GLN ASP TYR ASP TYR SER LEU ASP SEQRES 17 A 326 MET TRP SER LEU GLY CYS MET PHE ALA GLY MET ILE PHE SEQRES 18 A 326 ARG LYS GLU PRO PHE PHE TYR GLY HIS ASP ASN HIS ASP SEQRES 19 A 326 GLN LEU VAL LYS ILE ALA LYS VAL LEU GLY THR ASP GLY SEQRES 20 A 326 LEU ASN VAL TYR LEU ASN LYS TYR ARG ILE GLU LEU ASP SEQRES 21 A 326 PRO GLN LEU GLU ALA LEU VAL GLY ARG HIS SER ARG LYS SEQRES 22 A 326 PRO TRP LEU LYS PHE MET ASN ALA ASP ASN GLN HIS LEU SEQRES 23 A 326 VAL SER PRO GLU ALA ILE ASP PHE LEU ASP LYS LEU LEU SEQRES 24 A 326 ARG TYR ASP HIS GLN GLU ARG LEU THR ALA LEU GLU ALA SEQRES 25 A 326 MET THR HIS PRO TYR PHE GLN GLN VAL ARG ALA ALA GLU SEQRES 26 A 326 ASN HET EDO A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET PEG A 405 7 HET AGI A 406 20 HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM AGI 5,7-DIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE HETSYN EDO ETHYLENE GLYCOL HETSYN AGI APIGENIN FORMUL 2 EDO 4(C2 H6 O2) FORMUL 6 PEG C4 H10 O3 FORMUL 7 AGI C15 H10 O5 FORMUL 8 HOH *165(H2 O) HELIX 1 1 ASP A 14 ARG A 19 1 6 HELIX 2 2 PRO A 20 ASP A 25 1 6 HELIX 3 3 TYR A 26 LEU A 29 5 4 HELIX 4 4 GLU A 35 ASP A 37 5 3 HELIX 5 5 LYS A 74 MET A 89 1 16 HELIX 6 6 ASP A 120 TYR A 125 1 6 HELIX 7 7 PRO A 126 LEU A 128 5 3 HELIX 8 8 THR A 129 GLN A 150 1 22 HELIX 9 9 LYS A 158 HIS A 160 5 3 HELIX 10 10 ASP A 175 ALA A 179 5 5 HELIX 11 11 SER A 194 LYS A 198 5 5 HELIX 12 12 GLY A 199 VAL A 204 1 6 HELIX 13 13 TYR A 211 PHE A 227 1 17 HELIX 14 14 ASP A 237 GLY A 250 1 14 HELIX 15 15 GLY A 250 TYR A 261 1 12 HELIX 16 16 ASP A 266 GLY A 274 1 9 HELIX 17 17 PRO A 280 MET A 285 5 6 HELIX 18 18 ASN A 289 VAL A 293 5 5 HELIX 19 19 SER A 294 LEU A 305 1 12 HELIX 20 20 THR A 314 HIS A 321 1 8 HELIX 21 21 PHE A 324 ASN A 332 1 9 SHEET 1 A 5 TYR A 39 ARG A 47 0 SHEET 2 A 5 SER A 51 ASN A 58 -1 O VAL A 53 N VAL A 45 SHEET 3 A 5 LYS A 64 LEU A 70 -1 O CYS A 65 N GLY A 56 SHEET 4 A 5 PRO A 109 GLU A 114 -1 O LEU A 111 N LYS A 68 SHEET 5 A 5 LEU A 97 ARG A 102 -1 N LEU A 98 O ILE A 112 SHEET 1 B 2 ILE A 152 MET A 153 0 SHEET 2 B 2 GLU A 180 PHE A 181 -1 O GLU A 180 N MET A 153 SHEET 1 C 2 VAL A 162 ASP A 165 0 SHEET 2 C 2 LYS A 170 LEU A 173 -1 O ARG A 172 N MET A 163 CISPEP 1 GLU A 230 PRO A 231 0 -12.19 SITE 1 AC1 6 TYR A 125 MET A 221 GLY A 224 MET A 225 SITE 2 AC1 6 GLU A 230 HOH A 659 SITE 1 AC2 4 THR A 129 ASP A 130 HIS A 291 HOH A 553 SITE 1 AC3 9 VAL A 11 SER A 212 MET A 215 ARG A 312 SITE 2 AC3 9 LEU A 313 THR A 314 HOH A 516 HOH A 634 SITE 3 AC3 9 HOH A 635 SITE 1 AC4 5 ALA A 9 TYR A 12 ALA A 13 ASP A 14 SITE 2 AC4 5 GLN A 325 SITE 1 AC5 8 ARG A 278 ASP A 302 LEU A 305 ARG A 306 SITE 2 AC5 8 TYR A 307 ASP A 308 GLU A 311 HOH A 592 SITE 1 AC6 12 VAL A 45 VAL A 53 ILE A 66 LYS A 68 SITE 2 AC6 12 PHE A 113 VAL A 116 ASN A 118 MET A 163 SITE 3 AC6 12 ILE A 174 ASP A 175 HOH A 501 HOH A 581 CRYST1 142.363 59.875 45.931 90.00 103.40 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007024 0.000000 0.001674 0.00000 SCALE2 0.000000 0.016702 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022382 0.00000