HEADER CELL ADHESION 26-JAN-12 4DGU TITLE CRYSTAL STRUCTURE OF A PUTATIVE CELL ADHESION PROTEIN (BT0320) FROM TITLE 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 2.37 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CELL ADHESION PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 GENE: BT_0320; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS CELL ADHESION PROTEIN, FIMBRIAL RELATED PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-BIOLOGY, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4DGU 1 REMARK SEQADV LINK REVDAT 4 22-APR-20 4DGU 1 JRNL LINK REVDAT 3 24-JAN-18 4DGU 1 JRNL REVDAT 2 15-NOV-17 4DGU 1 REMARK REVDAT 1 15-FEB-12 4DGU 0 JRNL AUTH Q.XU,M.SHOJI,S.SHIBATA,M.NAITO,K.SATO,M.A.ELSLIGER, JRNL AUTH 2 J.C.GRANT,H.L.AXELROD,H.J.CHIU,C.L.FARR,L.JAROSZEWSKI, JRNL AUTH 3 M.W.KNUTH,A.M.DEACON,A.GODZIK,S.A.LESLEY,M.A.CURTIS, JRNL AUTH 4 K.NAKAYAMA,I.A.WILSON JRNL TITL A DISTINCT TYPE OF PILUS FROM THE HUMAN MICROBIOME. JRNL REF CELL V. 165 690 2016 JRNL REFN ISSN 1097-4172 JRNL PMID 27062925 JRNL DOI 10.1016/J.CELL.2016.03.016 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 23803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1212 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.48 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.68 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2839 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2303 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2691 REMARK 3 BIN R VALUE (WORKING SET) : 0.2283 REMARK 3 BIN FREE R VALUE : 0.2648 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.21 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 148 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3417 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 195 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.87430 REMARK 3 B22 (A**2) : 2.66480 REMARK 3 B33 (A**2) : 7.20950 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.341 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3508 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4763 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1648 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 102 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 511 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3508 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 491 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3841 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.19 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.42 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.90 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|32 - 267 } REMARK 3 ORIGIN FOR THE GROUP (A): 17.3806 -2.1484 77.8025 REMARK 3 T TENSOR REMARK 3 T11: -0.0407 T22: -0.1212 REMARK 3 T33: -0.1052 T12: 0.0737 REMARK 3 T13: 0.0019 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.9719 L22: 1.6187 REMARK 3 L33: 2.6433 L12: -0.6824 REMARK 3 L13: -0.6125 L23: 1.3749 REMARK 3 S TENSOR REMARK 3 S11: -0.2046 S12: -0.1231 S13: -0.0457 REMARK 3 S21: 0.1612 S22: 0.1938 S23: -0.0649 REMARK 3 S31: 0.3704 S32: 0.4854 S33: 0.0108 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|30 - 267 } REMARK 3 ORIGIN FOR THE GROUP (A): -11.6647 26.4297 96.8629 REMARK 3 T TENSOR REMARK 3 T11: 0.0528 T22: -0.2250 REMARK 3 T33: -0.1796 T12: 0.0853 REMARK 3 T13: 0.0363 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.4331 L22: 1.9884 REMARK 3 L33: 1.9924 L12: -0.9168 REMARK 3 L13: -0.6873 L23: 0.0863 REMARK 3 S TENSOR REMARK 3 S11: -0.0474 S12: -0.0668 S13: 0.1444 REMARK 3 S21: 0.4721 S22: 0.2140 S23: 0.0293 REMARK 3 S31: -0.3834 S32: -0.1772 S33: -0.1666 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ZINC FROM CRYSTALLIZATION CONDITION, CHLORIDE REMARK 3 (CL) FROM THE EXPRESSION OR PURIFICATION BUFFERS ARE MODELED REMARK 3 INTO THE STRUCTURE. THE MODELING OF ZINC IS SUPPORTED BY REMARK 3 ANOMALOUS DIFFERENCE MAPS. 3. ATOM RECORD CONTAINS SUM OF TLS REMARK 3 AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR REMARK 3 RESTRAINT REPRESENTATION (-AUTONCS). REMARK 4 REMARK 4 4DGU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070311. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.17 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937,0.91837,0.97867 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : RHODIUM-COATED VERTICAL AND REMARK 200 HORIZONTAL FOCUSING MIRRORS; REMARK 200 LIQUID-NITROGEN COOLED DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE DECEMBER 6, 2010 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23861 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 36.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.82100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M ZINC ACETATE, 10.0% POLYETHYLENE REMARK 280 GLYCOL 8000, 0.1M MES PH 6.17, NANODROP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.36450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.36450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.77450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.75500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.77450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.75500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.36450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.77450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.75500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.36450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.77450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.75500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING SUPPORTS THE ASSIGNMENT OF A DIMER OR REMARK 300 TETRAMER AS A SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -555.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 166.09350 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -270.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 487 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASP A 22 REMARK 465 GLU A 23 REMARK 465 LEU A 24 REMARK 465 GLN A 25 REMARK 465 GLU A 26 REMARK 465 THR A 27 REMARK 465 SER A 28 REMARK 465 LYS A 29 REMARK 465 GLU A 30 REMARK 465 ALA A 31 REMARK 465 ARG A 113 REMARK 465 SER A 114 REMARK 465 GLY A 115 REMARK 465 GLY A 116 REMARK 465 GLY B 0 REMARK 465 ASP B 22 REMARK 465 GLU B 23 REMARK 465 LEU B 24 REMARK 465 GLN B 25 REMARK 465 GLU B 26 REMARK 465 THR B 27 REMARK 465 SER B 28 REMARK 465 LYS B 29 REMARK 465 GLU B 89 REMARK 465 ILE B 90 REMARK 465 GLY B 91 REMARK 465 THR B 92 REMARK 465 ALA B 93 REMARK 465 ASP B 108 REMARK 465 GLU B 109 REMARK 465 ALA B 110 REMARK 465 ALA B 111 REMARK 465 THR B 112 REMARK 465 ARG B 113 REMARK 465 SER B 114 REMARK 465 GLY B 115 REMARK 465 GLY B 116 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 107 OG1 CG2 REMARK 470 ASP A 108 CG OD1 OD2 REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 ASN A 117 CG OD1 ND2 REMARK 470 LYS A 122 CD CE NZ REMARK 470 ARG A 160 NE CZ NH1 NH2 REMARK 470 ALA A 191 CB REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 470 ASN B 117 CG OD1 ND2 REMARK 470 LYS B 122 CG CD CE NZ REMARK 470 ALA B 191 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 82 -53.83 -133.28 REMARK 500 GLU A 89 73.69 -69.48 REMARK 500 LYS B 82 -52.39 -134.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 127 NE2 REMARK 620 2 HOH A 475 O 106.4 REMARK 620 3 HOH A 483 O 106.0 109.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 157 OE2 REMARK 620 2 GLU B 219 OE2 114.2 REMARK 620 3 HOH B 406 O 119.5 107.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 175 OE2 REMARK 620 2 GLU A 175 OE1 54.0 REMARK 620 3 GLU A 194 OE2 147.4 114.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 219 OE2 REMARK 620 2 HOH A 407 O 121.9 REMARK 620 3 GLU B 157 OE2 101.9 126.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 127 NE2 REMARK 620 2 HOH B 456 O 101.2 REMARK 620 3 HOH B 481 O 114.2 125.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 451 O REMARK 620 2 HOH B 479 O 84.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-393063 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. DBREF 4DGU A 22 267 UNP Q8AAZ2 Q8AAZ2_BACTN 22 267 DBREF 4DGU B 22 267 UNP Q8AAZ2 Q8AAZ2_BACTN 22 267 SEQADV 4DGU GLY A 0 UNP Q8AAZ2 EXPRESSION TAG SEQADV 4DGU GLY B 0 UNP Q8AAZ2 EXPRESSION TAG SEQRES 1 A 247 GLY ASP GLU LEU GLN GLU THR SER LYS GLU ALA THR ASN SEQRES 2 A 247 PHE SER ILE SER ILE ASP ASP ALA LEU SER ASP PRO LEU SEQRES 3 A 247 THR ARG THR SER ASN ASP LEU PHE PRO ALA ARG ASN SER SEQRES 4 A 247 ILE THR THR GLY GLU VAL ILE SER MSE ALA ALA SER GLY SEQRES 5 A 247 GLN ASP TYR THR PRO PHE ILE VAL GLY LYS ASP SER ARG SEQRES 6 A 247 ALA TRP ASN GLU ILE GLY THR ALA THR GLY THR VAL THR SEQRES 7 A 247 PHE TYR ALA HIS TYR PRO ALA LEU THR ASP GLU ALA ALA SEQRES 8 A 247 THR ARG SER GLY GLY ASN LYS ARG TYR LEU LYS GLY GLY SEQRES 9 A 247 GLN GLU HIS LEU PHE GLY THR ALA GLU ALA ALA PRO GLY SEQRES 10 A 247 SER GLN ASN VAL SER LEU LYS PHE LYS ARG MSE THR VAL SEQRES 11 A 247 PRO VAL ILE ILE LEU ASP GLU ASN ASP ARG PRO TYR GLU SEQRES 12 A 247 GLY GLU ALA LYS VAL GLU LEU SER LEU LYS ASN GLU GLY SEQRES 13 A 247 THR GLN ASP LEU LEU ASN GLY THR ILE GLU ILE ASN GLU SEQRES 14 A 247 ASN ALA LEU SER GLU ASN ILE GLU VAL LYS LYS VAL SER SEQRES 15 A 247 GLU GLY VAL THR THR ASN VAL LEU PRO GLN LYS ILE ASN SEQRES 16 A 247 ALA GLY GLU GLU ILE GLY THR ILE THR VAL GLY GLY VAL SEQRES 17 A 247 THR GLN LYS ILE SER ALA VAL GLU ASP LEU ASP LEU LYS SEQRES 18 A 247 ALA GLY SER THR LEU SER VAL ARG LEU SER LYS LYS PHE SEQRES 19 A 247 GLY GLY GLY ILE ILE ASP GLY ASN VAL PRO LEU TYR ARG SEQRES 1 B 247 GLY ASP GLU LEU GLN GLU THR SER LYS GLU ALA THR ASN SEQRES 2 B 247 PHE SER ILE SER ILE ASP ASP ALA LEU SER ASP PRO LEU SEQRES 3 B 247 THR ARG THR SER ASN ASP LEU PHE PRO ALA ARG ASN SER SEQRES 4 B 247 ILE THR THR GLY GLU VAL ILE SER MSE ALA ALA SER GLY SEQRES 5 B 247 GLN ASP TYR THR PRO PHE ILE VAL GLY LYS ASP SER ARG SEQRES 6 B 247 ALA TRP ASN GLU ILE GLY THR ALA THR GLY THR VAL THR SEQRES 7 B 247 PHE TYR ALA HIS TYR PRO ALA LEU THR ASP GLU ALA ALA SEQRES 8 B 247 THR ARG SER GLY GLY ASN LYS ARG TYR LEU LYS GLY GLY SEQRES 9 B 247 GLN GLU HIS LEU PHE GLY THR ALA GLU ALA ALA PRO GLY SEQRES 10 B 247 SER GLN ASN VAL SER LEU LYS PHE LYS ARG MSE THR VAL SEQRES 11 B 247 PRO VAL ILE ILE LEU ASP GLU ASN ASP ARG PRO TYR GLU SEQRES 12 B 247 GLY GLU ALA LYS VAL GLU LEU SER LEU LYS ASN GLU GLY SEQRES 13 B 247 THR GLN ASP LEU LEU ASN GLY THR ILE GLU ILE ASN GLU SEQRES 14 B 247 ASN ALA LEU SER GLU ASN ILE GLU VAL LYS LYS VAL SER SEQRES 15 B 247 GLU GLY VAL THR THR ASN VAL LEU PRO GLN LYS ILE ASN SEQRES 16 B 247 ALA GLY GLU GLU ILE GLY THR ILE THR VAL GLY GLY VAL SEQRES 17 B 247 THR GLN LYS ILE SER ALA VAL GLU ASP LEU ASP LEU LYS SEQRES 18 B 247 ALA GLY SER THR LEU SER VAL ARG LEU SER LYS LYS PHE SEQRES 19 B 247 GLY GLY GLY ILE ILE ASP GLY ASN VAL PRO LEU TYR ARG MODRES 4DGU MSE A 68 MET SELENOMETHIONINE MODRES 4DGU MSE A 148 MET SELENOMETHIONINE MODRES 4DGU MSE B 68 MET SELENOMETHIONINE MODRES 4DGU MSE B 148 MET SELENOMETHIONINE HET MSE A 68 8 HET MSE A 148 8 HET MSE B 68 8 HET MSE B 148 8 HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET ZN A 304 1 HET CL A 305 1 HET ZN B 301 1 HET ZN B 302 1 HET ZN B 303 1 HET ZN B 304 1 HET ZN B 305 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 ZN 9(ZN 2+) FORMUL 7 CL CL 1- FORMUL 13 HOH *195(H2 O) HELIX 1 1 THR A 49 PHE A 54 1 6 HELIX 2 2 PRO A 55 ILE A 60 1 6 HELIX 3 3 THR A 107 THR A 112 1 6 HELIX 4 4 LYS A 200 GLY A 204 5 5 HELIX 5 5 THR B 49 PHE B 54 1 6 HELIX 6 6 PRO B 55 ILE B 60 1 6 HELIX 7 7 LYS B 200 GLY B 204 5 5 SHEET 1 A 7 THR A 76 ILE A 79 0 SHEET 2 A 7 VAL A 65 ALA A 70 -1 N MSE A 68 O THR A 76 SHEET 3 A 7 VAL A 97 TYR A 103 -1 O TYR A 100 N ALA A 69 SHEET 4 A 7 LEU A 128 ALA A 134 -1 O ALA A 134 N VAL A 97 SHEET 5 A 7 ASN A 140 ARG A 147 -1 O LYS A 146 N PHE A 129 SHEET 6 A 7 ASN A 33 ASP A 40 1 N ASP A 39 O LEU A 143 SHEET 7 A 7 ARG A 85 ALA A 86 -1 O ARG A 85 N PHE A 34 SHEET 1 B 3 LYS A 118 LYS A 122 0 SHEET 2 B 3 GLU A 175 ASP A 179 -1 O GLN A 178 N ARG A 119 SHEET 3 B 3 ILE A 185 ILE A 187 -1 O GLU A 186 N THR A 177 SHEET 1 C 8 GLU A 194 GLU A 197 0 SHEET 2 C 8 LYS A 167 LEU A 172 -1 N LEU A 172 O GLU A 194 SHEET 3 C 8 GLY A 221 THR A 224 -1 O THR A 224 N LYS A 167 SHEET 4 C 8 THR A 229 ALA A 234 -1 O ILE A 232 N GLY A 221 SHEET 5 C 8 GLY B 257 ASN B 262 1 O ILE B 259 N SER A 233 SHEET 6 C 8 THR A 245 LEU A 250 -1 N SER A 247 O ASP B 260 SHEET 7 C 8 VAL A 150 LEU A 155 1 N LEU A 155 O VAL A 248 SHEET 8 C 8 ASN A 208 VAL A 209 -1 O VAL A 209 N VAL A 150 SHEET 1 D 2 LYS A 213 ILE A 214 0 SHEET 2 D 2 LEU A 238 ASP A 239 -1 O LEU A 238 N ILE A 214 SHEET 1 E 8 GLU B 194 GLU B 197 0 SHEET 2 E 8 LYS B 167 LEU B 172 -1 N LEU B 172 O GLU B 194 SHEET 3 E 8 GLY B 221 THR B 224 -1 O THR B 224 N LYS B 167 SHEET 4 E 8 THR B 229 ALA B 234 -1 O ILE B 232 N GLY B 221 SHEET 5 E 8 GLY A 257 ASN A 262 1 N ILE A 259 O SER B 233 SHEET 6 E 8 THR B 245 LEU B 250 -1 O SER B 247 N ASP A 260 SHEET 7 E 8 VAL B 150 LEU B 155 1 N LEU B 155 O VAL B 248 SHEET 8 E 8 ASN B 208 VAL B 209 -1 O VAL B 209 N VAL B 150 SHEET 1 F 7 THR B 76 ILE B 79 0 SHEET 2 F 7 VAL B 65 ALA B 70 -1 N MSE B 68 O THR B 76 SHEET 3 F 7 VAL B 97 TYR B 103 -1 O TYR B 100 N ALA B 69 SHEET 4 F 7 LEU B 128 ALA B 134 -1 O ALA B 134 N VAL B 97 SHEET 5 F 7 ASN B 140 ARG B 147 -1 O LYS B 144 N THR B 131 SHEET 6 F 7 ASN B 33 ASP B 40 1 N ASP B 39 O LEU B 143 SHEET 7 F 7 ARG B 85 ALA B 86 -1 O ARG B 85 N PHE B 34 SHEET 1 G 3 LYS B 118 LYS B 122 0 SHEET 2 G 3 GLU B 175 ASP B 179 -1 O GLN B 178 N ARG B 119 SHEET 3 G 3 ILE B 185 ILE B 187 -1 O GLU B 186 N THR B 177 SHEET 1 H 2 LYS B 213 ILE B 214 0 SHEET 2 H 2 LEU B 238 ASP B 239 -1 O LEU B 238 N ILE B 214 LINK C SER A 67 N MSE A 68 1555 1555 1.33 LINK C MSE A 68 N ALA A 69 1555 1555 1.34 LINK C ARG A 147 N MSE A 148 1555 1555 1.36 LINK C MSE A 148 N THR A 149 1555 1555 1.35 LINK C SER B 67 N MSE B 68 1555 1555 1.32 LINK C MSE B 68 N ALA B 69 1555 1555 1.34 LINK C ARG B 147 N MSE B 148 1555 1555 1.32 LINK C MSE B 148 N THR B 149 1555 1555 1.35 LINK NE2 HIS A 127 ZN ZN A 302 1555 1555 2.16 LINK OE2 GLU A 157 ZN ZN A 303 1555 1555 2.02 LINK OE2 GLU A 175 ZN ZN A 301 1555 1555 2.12 LINK OE1 GLU A 175 ZN ZN A 301 1555 1555 2.64 LINK OE2 GLU A 194 ZN ZN A 301 1555 1555 1.88 LINK OE2 GLU A 219 ZN ZN A 304 1555 1555 2.18 LINK ZN ZN A 302 O HOH A 475 1555 1555 2.28 LINK ZN ZN A 302 O HOH A 483 1555 1555 2.24 LINK ZN ZN A 303 OE2 GLU B 219 1555 1555 2.02 LINK ZN ZN A 303 O HOH B 406 1555 1555 2.06 LINK ZN ZN A 304 O HOH A 407 1555 1555 2.29 LINK ZN ZN A 304 OE2 GLU B 157 1555 1555 1.98 LINK OD1 ASP B 39 ZN ZN B 302 1555 1555 2.28 LINK NE2 HIS B 127 ZN ZN B 301 1555 1555 2.15 LINK OD2 ASP B 159 ZN ZN B 303 1555 1555 2.02 LINK ZN ZN B 301 O HOH B 456 1555 1555 2.32 LINK ZN ZN B 301 O HOH B 481 1555 1555 2.63 LINK ZN ZN B 304 O HOH B 451 1555 1555 2.66 LINK ZN ZN B 304 O HOH B 479 1555 1555 2.66 CISPEP 1 TYR A 103 PRO A 104 0 -1.12 CISPEP 2 TYR B 103 PRO B 104 0 -1.69 SITE 1 AC1 4 GLU A 175 GLU A 194 HOH A 493 ASP B 74 SITE 1 AC2 5 LYS A 122 HIS A 127 HOH A 464 HOH A 475 SITE 2 AC2 5 HOH A 483 SITE 1 AC3 4 GLU A 157 GLU B 219 HOH B 406 HOH B 476 SITE 1 AC4 6 GLU A 219 LYS A 231 HOH A 407 GLU B 157 SITE 2 AC4 6 LYS B 253 HOH B 468 SITE 1 AC5 4 LEU A 42 SER A 43 ARG B 48 HOH B 441 SITE 1 AC6 5 LYS B 122 HIS B 127 HOH B 456 HOH B 466 SITE 2 AC6 5 HOH B 481 SITE 1 AC7 4 ASP B 39 HOH B 469 HOH B 484 HOH B 485 SITE 1 AC8 1 ASP B 159 SITE 1 AC9 5 GLU A 236 HOH A 504 GLU B 236 HOH B 451 SITE 2 AC9 5 HOH B 479 SITE 1 BC1 3 ASP B 260 HOH B 477 HOH B 489 CRYST1 83.549 127.510 110.729 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011969 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009031 0.00000