HEADER HYDROLASE 29-JAN-12 4DHK TITLE CRYSTAL STRUCTURE OF A DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE (DCTP TITLE 2 DEAMINASE) FROM BURKHOLDERIA THAILANDENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DCTP DEAMINASE; COMPND 5 EC: 3.5.4.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 STRAIN: E264 / ATCC 700388 / DSM 13276 / CIP 106301; SOURCE 5 GENE: DCD, BTH_I0860; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS BURKHOLDERIA THAILANDENSIS, DEAMINASE, HYDROLASE, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 4DHK 1 REMARK SEQADV REVDAT 2 30-OCT-13 4DHK 1 JRNL REVDAT 1 14-MAR-12 4DHK 0 JRNL AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, JRNL AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, JRNL AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, JRNL AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, JRNL AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, JRNL AUTH 6 W.C.VAN VOORHIS JRNL TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE JRNL TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. JRNL REF PLOS ONE V. 8 53851 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23382856 JRNL DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1395 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1940 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2535 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : 0.36000 REMARK 3 B33 (A**2) : -0.54000 REMARK 3 B12 (A**2) : 0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.905 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2658 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1774 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3623 ; 1.417 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4309 ; 1.018 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 6.056 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;29.348 ;23.729 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 388 ;13.325 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.154 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 407 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3004 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 576 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): -38.4042 15.7817 58.6087 REMARK 3 T TENSOR REMARK 3 T11: 0.0908 T22: 0.0792 REMARK 3 T33: 0.0689 T12: 0.0337 REMARK 3 T13: 0.0356 T23: -0.0452 REMARK 3 L TENSOR REMARK 3 L11: 0.7704 L22: 0.6921 REMARK 3 L33: 1.0884 L12: 0.0097 REMARK 3 L13: -0.0681 L23: 0.0724 REMARK 3 S TENSOR REMARK 3 S11: 0.0078 S12: 0.1825 S13: -0.1515 REMARK 3 S21: -0.1457 S22: -0.0203 S23: -0.1234 REMARK 3 S31: 0.1891 S32: 0.0862 S33: 0.0125 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 161 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9285 13.3193 58.2996 REMARK 3 T TENSOR REMARK 3 T11: 0.1849 T22: 0.1227 REMARK 3 T33: 0.0543 T12: 0.0377 REMARK 3 T13: 0.0019 T23: -0.0718 REMARK 3 L TENSOR REMARK 3 L11: 1.2750 L22: 0.8125 REMARK 3 L33: 0.9646 L12: -0.3022 REMARK 3 L13: -0.3576 L23: -0.1200 REMARK 3 S TENSOR REMARK 3 S11: -0.0892 S12: -0.3185 S13: 0.1647 REMARK 3 S21: 0.3085 S22: 0.0882 S23: -0.0158 REMARK 3 S31: -0.2453 S32: 0.0253 S33: 0.0010 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES WITH TLS ADDED. HYDROGENS HAVE REMARK 3 BEEN ADDED IN THE RIDING POSITIONS. REMARK 4 REMARK 4 4DHK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070337. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : ADJUSTABLE FOCUS K-B PAIR SI REMARK 200 PLUS PT, RH COATINGS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27763 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 69.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.520 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.48 REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3KM3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INTERNAL TRACKING NUMBER 225926. JCSG+ REMARK 280 WELL A2. 20.0% W/V PEG3000, 0.1M AMMONIUM CITRATE/CITRIC ACID, REMARK 280 20% ETHYLENE GLYCOL CRYO. BUTHA.00973.A.A1 PS01180 46.83MG/ML, REMARK 280 PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.43500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.80926 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.86333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 46.43500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 26.80926 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 45.86333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 46.43500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 26.80926 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.86333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.61852 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 91.72667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 53.61852 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 91.72667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 53.61852 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 91.72667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -46.43500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 80.42778 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -92.87000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 -46.43500 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 26.80926 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 45.86333 REMARK 350 BIOMT1 5 -0.500000 -0.866025 0.000000 -46.43500 REMARK 350 BIOMT2 5 0.866025 -0.500000 0.000000 26.80926 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 45.86333 REMARK 350 BIOMT1 6 -0.500000 0.866025 0.000000 -46.43500 REMARK 350 BIOMT2 6 -0.866025 -0.500000 0.000000 26.80926 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 45.86333 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -46.43500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 80.42778 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -92.87000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 174 REMARK 465 GLY A 175 REMARK 465 GLY A 176 REMARK 465 LYS A 177 REMARK 465 TYR A 178 REMARK 465 GLN A 179 REMARK 465 GLY A 180 REMARK 465 GLN A 181 REMARK 465 ARG A 182 REMARK 465 GLY A 183 REMARK 465 VAL A 184 REMARK 465 THR A 185 REMARK 465 LEU A 186 REMARK 465 PRO A 187 REMARK 465 LYS A 188 REMARK 465 THR A 189 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 162 REMARK 465 SER B 163 REMARK 465 ASP B 164 REMARK 465 GLU B 165 REMARK 465 VAL B 166 REMARK 465 CYS B 167 REMARK 465 ASP B 168 REMARK 465 VAL B 169 REMARK 465 SER B 170 REMARK 465 TYR B 171 REMARK 465 ALA B 172 REMARK 465 ASP B 173 REMARK 465 ARG B 174 REMARK 465 GLY B 175 REMARK 465 GLY B 176 REMARK 465 LYS B 177 REMARK 465 TYR B 178 REMARK 465 GLN B 179 REMARK 465 GLY B 180 REMARK 465 GLN B 181 REMARK 465 ARG B 182 REMARK 465 GLY B 183 REMARK 465 VAL B 184 REMARK 465 THR B 185 REMARK 465 LEU B 186 REMARK 465 PRO B 187 REMARK 465 LYS B 188 REMARK 465 THR B 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 ARG A 35 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 166 CG1 CG2 REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 ARG B 11 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 HIS B 16 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 17 CG CD CE NZ REMARK 470 GLU B 20 CG CD OE1 OE2 REMARK 470 ASP B 25 CG OD1 OD2 REMARK 470 ARG B 28 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 31 CG CD OE1 OE2 REMARK 470 TYR B 44 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 103 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 105 CG1 CG2 REMARK 470 LEU B 106 CG CD1 CD2 REMARK 470 GLU B 128 CG CD OE1 OE2 REMARK 470 GLU B 130 CG CD OE1 OE2 REMARK 470 GLU B 132 CG CD OE1 OE2 REMARK 470 PHE B 161 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 144 35.85 -89.17 REMARK 500 PRO B 144 35.00 -88.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUTHA.00973.A RELATED DB: TARGETTRACK DBREF 4DHK A 1 189 UNP Q2T083 DCD_BURTA 1 189 DBREF 4DHK B 1 189 UNP Q2T083 DCD_BURTA 1 189 SEQADV 4DHK GLY A -1 UNP Q2T083 EXPRESSION TAG SEQADV 4DHK SER A 0 UNP Q2T083 EXPRESSION TAG SEQADV 4DHK GLY B -1 UNP Q2T083 EXPRESSION TAG SEQADV 4DHK SER B 0 UNP Q2T083 EXPRESSION TAG SEQRES 1 A 191 GLY SER MET SER ILE LYS SER ASP LYS TRP ILE ARG ARG SEQRES 2 A 191 MET ALA GLU GLU HIS LYS MET ILE GLU PRO PHE VAL PRO SEQRES 3 A 191 ASP GLN VAL ARG ALA ALA GLU ASP GLY ARG ARG ILE VAL SEQRES 4 A 191 SER TYR GLY THR SER SER TYR GLY TYR ASP ILE ARG CYS SEQRES 5 A 191 ALA ASP GLU PHE LYS ILE PHE THR ASN ILE ASN SER THR SEQRES 6 A 191 ILE VAL ASP PRO LYS ASN PHE ASP GLU GLY SER PHE VAL SEQRES 7 A 191 ASP PHE LYS GLY ASP VAL CYS ILE ILE PRO PRO ASN SER SEQRES 8 A 191 PHE ALA LEU ALA ARG THR VAL GLU TYR PHE ARG ILE PRO SEQRES 9 A 191 ARG THR VAL LEU THR VAL CYS LEU GLY LYS SER THR TYR SEQRES 10 A 191 ALA ARG CYS GLY ILE ILE VAL ASN VAL THR PRO PHE GLU SEQRES 11 A 191 PRO GLU TRP GLU GLY TYR VAL THR LEU GLU PHE SER ASN SEQRES 12 A 191 THR THR PRO LEU PRO ALA LYS ILE TYR ALA ASN GLU GLY SEQRES 13 A 191 VAL ALA GLN VAL LEU PHE PHE GLU SER ASP GLU VAL CYS SEQRES 14 A 191 ASP VAL SER TYR ALA ASP ARG GLY GLY LYS TYR GLN GLY SEQRES 15 A 191 GLN ARG GLY VAL THR LEU PRO LYS THR SEQRES 1 B 191 GLY SER MET SER ILE LYS SER ASP LYS TRP ILE ARG ARG SEQRES 2 B 191 MET ALA GLU GLU HIS LYS MET ILE GLU PRO PHE VAL PRO SEQRES 3 B 191 ASP GLN VAL ARG ALA ALA GLU ASP GLY ARG ARG ILE VAL SEQRES 4 B 191 SER TYR GLY THR SER SER TYR GLY TYR ASP ILE ARG CYS SEQRES 5 B 191 ALA ASP GLU PHE LYS ILE PHE THR ASN ILE ASN SER THR SEQRES 6 B 191 ILE VAL ASP PRO LYS ASN PHE ASP GLU GLY SER PHE VAL SEQRES 7 B 191 ASP PHE LYS GLY ASP VAL CYS ILE ILE PRO PRO ASN SER SEQRES 8 B 191 PHE ALA LEU ALA ARG THR VAL GLU TYR PHE ARG ILE PRO SEQRES 9 B 191 ARG THR VAL LEU THR VAL CYS LEU GLY LYS SER THR TYR SEQRES 10 B 191 ALA ARG CYS GLY ILE ILE VAL ASN VAL THR PRO PHE GLU SEQRES 11 B 191 PRO GLU TRP GLU GLY TYR VAL THR LEU GLU PHE SER ASN SEQRES 12 B 191 THR THR PRO LEU PRO ALA LYS ILE TYR ALA ASN GLU GLY SEQRES 13 B 191 VAL ALA GLN VAL LEU PHE PHE GLU SER ASP GLU VAL CYS SEQRES 14 B 191 ASP VAL SER TYR ALA ASP ARG GLY GLY LYS TYR GLN GLY SEQRES 15 B 191 GLN ARG GLY VAL THR LEU PRO LYS THR HET EDO A 201 4 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO B 201 4 HET EDO B 202 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 7(C2 H6 O2) FORMUL 10 HOH *156(H2 O) HELIX 1 1 SER A 5 LYS A 17 1 13 HELIX 2 2 ASP A 71 GLY A 73 5 3 HELIX 3 3 LYS A 112 ARG A 117 1 6 HELIX 4 4 SER B 5 LYS B 17 1 13 HELIX 5 5 ASP B 71 GLY B 73 5 3 HELIX 6 6 LYS B 112 ARG B 117 1 6 SHEET 1 A 4 ILE A 19 GLU A 20 0 SHEET 2 A 4 SER A 89 ARG A 100 -1 O TYR A 98 N GLU A 20 SHEET 3 A 4 GLU A 53 PHE A 57 -1 N LYS A 55 O LEU A 92 SHEET 4 A 4 PHE A 75 LYS A 79 -1 O PHE A 78 N PHE A 54 SHEET 1 B 4 ILE A 19 GLU A 20 0 SHEET 2 B 4 SER A 89 ARG A 100 -1 O TYR A 98 N GLU A 20 SHEET 3 B 4 GLU A 132 ASN A 141 -1 O LEU A 137 N ALA A 93 SHEET 4 B 4 ILE A 120 ASN A 123 -1 N ILE A 121 O SER A 140 SHEET 1 C 5 GLN A 26 ALA A 29 0 SHEET 2 C 5 ARG A 35 SER A 42 -1 O TYR A 39 N VAL A 27 SHEET 3 C 5 GLY A 45 ARG A 49 -1 O ASP A 47 N GLY A 40 SHEET 4 C 5 GLY A 154 GLU A 162 -1 O VAL A 158 N TYR A 46 SHEET 5 C 5 VAL A 105 GLY A 111 -1 N LEU A 110 O GLN A 157 SHEET 1 D 2 VAL A 82 ILE A 85 0 SHEET 2 D 2 ALA A 147 TYR A 150 -1 O ALA A 147 N ILE A 85 SHEET 1 E 4 ILE B 19 GLU B 20 0 SHEET 2 E 4 SER B 89 ARG B 100 -1 O TYR B 98 N GLU B 20 SHEET 3 E 4 GLU B 53 PHE B 57 -1 N LYS B 55 O LEU B 92 SHEET 4 E 4 PHE B 75 LYS B 79 -1 O PHE B 78 N PHE B 54 SHEET 1 F 4 ILE B 19 GLU B 20 0 SHEET 2 F 4 SER B 89 ARG B 100 -1 O TYR B 98 N GLU B 20 SHEET 3 F 4 GLU B 132 ASN B 141 -1 O LEU B 137 N ALA B 93 SHEET 4 F 4 ILE B 120 ASN B 123 -1 N ASN B 123 O GLU B 138 SHEET 1 G 5 GLN B 26 ALA B 29 0 SHEET 2 G 5 ARG B 35 SER B 42 -1 O TYR B 39 N VAL B 27 SHEET 3 G 5 GLY B 45 ARG B 49 -1 O ASP B 47 N GLY B 40 SHEET 4 G 5 GLY B 154 PHE B 161 -1 O VAL B 158 N TYR B 46 SHEET 5 G 5 LEU B 106 GLY B 111 -1 N LEU B 110 O GLN B 157 SHEET 1 H 2 VAL B 82 ILE B 85 0 SHEET 2 H 2 ALA B 147 TYR B 150 -1 O ALA B 147 N ILE B 85 CISPEP 1 GLU A 20 PRO A 21 0 -1.83 CISPEP 2 GLU B 20 PRO B 21 0 -2.75 SITE 1 AC1 5 VAL A 65 ASP A 66 PHE A 70 ASP A 71 SITE 2 AC1 5 SER A 74 SITE 1 AC2 3 PHE A 78 LYS A 79 HOH A 339 SITE 1 AC3 2 ASN A 88 ASN B 88 SITE 1 AC4 4 ARG A 100 ILE A 101 GLU A 130 GLU A 132 SITE 1 AC5 6 THR A 125 PHE A 127 TRP A 131 VAL A 135 SITE 2 AC5 6 THR A 136 HOH A 365 SITE 1 AC6 4 VAL B 65 ASP B 66 ASP B 71 SER B 74 SITE 1 AC7 5 SER B 113 ALA B 116 ASN B 123 THR B 125 SITE 2 AC7 5 THR B 136 CRYST1 92.870 92.870 137.590 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010768 0.006217 0.000000 0.00000 SCALE2 0.000000 0.012434 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007268 0.00000