HEADER ELECTRON TRANSPORT 30-JAN-12 4DHV TITLE CRYSTAL STRUCTURE OF THE PYROCOCCUS FURIOSUS FERREDOXIN D14C VARIANT TITLE 2 CONTAINING THE HETEROMETALLIC [AGFE3S4] CLUSTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: DSM3638; SOURCE 5 GENE: FDXA, FERREDOXIN, PF1909; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS FERREDOXIN, PYROCOCCUS FURIOSUS, IRON-SULFUR PROTEIN, ELECTRON KEYWDS 2 TRANSPORT, HETEROMETALLIC, [AGFE3S4] CLUSTER, SILVER, ARTIFICIAL KEYWDS 3 METALLOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.N.JAKAB-SIMON,H.E.M.CHRISTENSEN,L.T.HAAHR REVDAT 6 27-NOV-24 4DHV 1 REMARK REVDAT 5 13-SEP-23 4DHV 1 REMARK SEQADV LINK REVDAT 4 07-MAR-18 4DHV 1 REMARK REVDAT 3 06-MAR-13 4DHV 1 JRNL REVDAT 2 06-FEB-13 4DHV 1 JRNL REVDAT 1 16-JAN-13 4DHV 0 JRNL AUTH M.MARTIC,I.N.JAKAB-SIMON,L.T.HAAHR,W.R.HAGEN,H.E.CHRISTENSEN JRNL TITL HETEROMETALLIC [AGFE(3)S (4)] FERREDOXIN VARIANTS: JRNL TITL 2 SYNTHESIS, CHARACTERIZATION, AND THE FIRST CRYSTAL STRUCTURE JRNL TITL 3 OF AN ENGINEERED HETEROMETALLIC IRON-SULFUR PROTEIN. JRNL REF J.BIOL.INORG.CHEM. V. 18 261 2013 JRNL REFN ISSN 0949-8257 JRNL PMID 23296387 JRNL DOI 10.1007/S00775-012-0971-3 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 9050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 428 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 615 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 988 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.208 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.862 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1071 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1465 ; 1.700 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 146 ; 5.364 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 46 ;32.845 ;28.696 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 184 ;15.526 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 168 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 830 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 710 ; 0.942 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1159 ; 1.696 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 361 ; 2.984 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 306 ; 4.903 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 4 REMARK 4 4DHV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070348. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16141 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.30600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2Z8Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG600, MALONIC ACID/IMIDAZOL/BORIC REMARK 280 ACID BUFFER MIXTURE, [CO(NH3)6]CL3, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.55500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.19500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.66500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.19500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.55500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.66500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 AG1 0KA B 101 O HOH B 249 1.82 REMARK 500 O HOH A 241 O HOH A 245 1.99 REMARK 500 S1 0KA B 101 O HOH B 249 1.99 REMARK 500 O HOH B 233 O HOH B 236 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 0KA B 101 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 11 SG REMARK 620 2 0KA B 101 S3 101.7 REMARK 620 3 0KA B 101 S2 117.5 104.0 REMARK 620 4 0KA B 101 S4 110.8 111.3 110.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 0KA B 101 AG1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 14 SG REMARK 620 2 0KA B 101 S3 119.3 REMARK 620 3 0KA B 101 S1 112.9 83.2 REMARK 620 4 0KA B 101 S4 144.2 86.5 93.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 0KA B 101 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 17 SG REMARK 620 2 0KA B 101 S3 108.1 REMARK 620 3 0KA B 101 S2 115.4 108.8 REMARK 620 4 0KA B 101 S1 110.5 112.6 101.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 0KA B 101 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 56 SG REMARK 620 2 0KA B 101 S2 121.8 REMARK 620 3 0KA B 101 S4 109.8 103.1 REMARK 620 4 0KA B 101 S1 107.1 98.1 117.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 0KA A 102 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 11 SG REMARK 620 2 0KA A 102 S3 106.4 REMARK 620 3 0KA A 102 S2 112.5 107.4 REMARK 620 4 0KA A 102 S4 114.6 110.5 105.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 0KA A 102 AG1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 14 SG REMARK 620 2 0KA A 102 S3 123.4 REMARK 620 3 0KA A 102 S1 107.0 84.3 REMARK 620 4 0KA A 102 S4 141.5 89.2 95.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 0KA A 102 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 17 SG REMARK 620 2 0KA A 102 S3 114.7 REMARK 620 3 0KA A 102 S2 118.9 103.3 REMARK 620 4 0KA A 102 S1 104.9 108.8 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 0KA A 102 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 56 SG REMARK 620 2 0KA A 102 S2 113.0 REMARK 620 3 0KA A 102 S4 103.7 97.1 REMARK 620 4 0KA A 102 S1 112.9 109.9 119.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0KA B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0KA A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO A 104 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z8Q RELATED DB: PDB REMARK 900 PF FD D14C MUTANT WITH [FE4S4] CLUSTER REMARK 900 RELATED ID: 3PNI RELATED DB: PDB REMARK 900 PF FD D14C MUTANT WITH [FE3S4] CLUSTER REMARK 900 RELATED ID: 1SJ1 RELATED DB: PDB REMARK 900 PF FD WT DBREF 4DHV B 1 66 UNP P29603 FER_PYRFU 2 67 DBREF 4DHV A 1 66 UNP P29603 FER_PYRFU 2 67 SEQADV 4DHV CYS B 14 UNP P29603 ASP 15 ENGINEERED MUTATION SEQADV 4DHV CYS A 14 UNP P29603 ASP 15 ENGINEERED MUTATION SEQRES 1 B 66 ALA TRP LYS VAL SER VAL ASP GLN ASP THR CYS ILE GLY SEQRES 2 B 66 CYS ALA ILE CYS ALA SER LEU CYS PRO ASP VAL PHE GLU SEQRES 3 B 66 MET ASN ASP GLU GLY LYS ALA GLN PRO LYS VAL GLU VAL SEQRES 4 B 66 ILE GLU ASP GLU GLU LEU TYR ASN CYS ALA LYS GLU ALA SEQRES 5 B 66 MET GLU ALA CYS PRO VAL SER ALA ILE THR ILE GLU GLU SEQRES 6 B 66 ALA SEQRES 1 A 66 ALA TRP LYS VAL SER VAL ASP GLN ASP THR CYS ILE GLY SEQRES 2 A 66 CYS ALA ILE CYS ALA SER LEU CYS PRO ASP VAL PHE GLU SEQRES 3 A 66 MET ASN ASP GLU GLY LYS ALA GLN PRO LYS VAL GLU VAL SEQRES 4 A 66 ILE GLU ASP GLU GLU LEU TYR ASN CYS ALA LYS GLU ALA SEQRES 5 A 66 MET GLU ALA CYS PRO VAL SER ALA ILE THR ILE GLU GLU SEQRES 6 A 66 ALA HET 0KA B 101 8 HET NCO B 102 7 HET NCO A 101 7 HET 0KA A 102 8 HET NCO A 103 7 HET NCO A 104 7 HETNAM 0KA SILVER/IRON/SULFUR CLUSTER HETNAM NCO COBALT HEXAMMINE(III) FORMUL 3 0KA 2(AG FE3 S4) FORMUL 4 NCO 4(CO H18 N6 3+) FORMUL 9 HOH *98(H2 O) HELIX 1 1 ALA B 15 CYS B 21 1 7 HELIX 2 2 ASP B 42 CYS B 56 1 15 HELIX 3 3 ALA A 15 CYS A 21 1 7 HELIX 4 4 ASP A 42 CYS A 56 1 15 SHEET 1 A 3 VAL B 39 ILE B 40 0 SHEET 2 A 3 TRP B 2 VAL B 6 -1 N TRP B 2 O ILE B 40 SHEET 3 A 3 ILE B 61 GLU B 65 -1 O GLU B 64 N LYS B 3 SHEET 1 B 2 PHE B 25 MET B 27 0 SHEET 2 B 2 ALA B 33 PRO B 35 -1 O GLN B 34 N GLU B 26 SHEET 1 C 2 TRP A 2 VAL A 6 0 SHEET 2 C 2 ILE A 61 GLU A 65 -1 O GLU A 64 N LYS A 3 SHEET 1 D 2 PHE A 25 MET A 27 0 SHEET 2 D 2 ALA A 33 PRO A 35 -1 O GLN A 34 N GLU A 26 SSBOND 1 CYS B 21 CYS B 48 1555 1555 2.07 SSBOND 2 CYS A 21 CYS A 48 1555 1555 2.06 LINK SG CYS B 11 FE2 0KA B 101 1555 1555 2.28 LINK SG CYS B 14 AG1 0KA B 101 1555 1555 2.33 LINK SG CYS B 17 FE3 0KA B 101 1555 1555 2.31 LINK SG CYS B 56 FE1 0KA B 101 1555 1555 2.23 LINK SG CYS A 11 FE2 0KA A 102 1555 1555 2.18 LINK SG CYS A 14 AG1 0KA A 102 1555 1555 2.39 LINK SG CYS A 17 FE3 0KA A 102 1555 1555 2.39 LINK SG CYS A 56 FE1 0KA A 102 1555 1555 2.32 SITE 1 AC1 12 VAL B 6 CYS B 11 ILE B 12 CYS B 14 SITE 2 AC1 12 ALA B 15 ILE B 16 CYS B 17 ALA B 33 SITE 3 AC1 12 CYS B 56 VAL B 58 ILE B 61 HOH B 249 SITE 1 AC2 6 SER A 19 LEU A 20 CYS A 48 GLU B 41 SITE 2 AC2 6 ASP B 42 GLU B 43 SITE 1 AC3 6 ASP A 42 GLU A 44 HOH A 217 LEU B 20 SITE 2 AC3 6 CYS B 48 GLU B 51 SITE 1 AC4 8 CYS A 11 ILE A 12 CYS A 14 ALA A 15 SITE 2 AC4 8 CYS A 17 ALA A 33 CYS A 56 ILE A 61 SITE 1 AC5 13 ASP A 9 GLU A 26 MET A 27 ASN A 28 SITE 2 AC5 13 ASP A 29 HOH A 218 GLU B 54 ALA B 55 SITE 3 AC5 13 CYS B 56 PRO B 57 SER B 59 HOH B 210 SITE 4 AC5 13 HOH B 252 SITE 1 AC6 7 MET A 53 GLU A 54 ALA A 55 CYS A 56 SITE 2 AC6 7 PRO A 57 SER A 59 ASP B 7 CRYST1 45.110 49.330 54.390 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022168 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018386 0.00000 TER 526 ALA B 66 TER 1046 ALA A 66 HETATM 1047 AG1 0KA B 101 -7.224 -8.739 13.628 1.00 15.73 AG HETATM 1048 FE1 0KA B 101 -7.524 -5.986 12.408 1.00 11.78 FE HETATM 1049 FE2 0KA B 101 -7.751 -5.975 14.986 1.00 10.70 FE HETATM 1050 FE3 0KA B 101 -5.332 -6.095 13.955 1.00 13.49 FE HETATM 1051 S1 0KA B 101 -5.639 -7.082 12.045 1.00 17.18 S HETATM 1052 S2 0KA B 101 -6.675 -4.314 13.764 1.00 14.03 S HETATM 1053 S3 0KA B 101 -6.031 -7.348 15.700 1.00 16.42 S HETATM 1054 S4 0KA B 101 -9.120 -7.026 13.781 1.00 13.07 S HETATM 1055 CO NCO B 102 13.999 8.583 5.469 1.00 30.11 CO HETATM 1056 N1 NCO B 102 15.936 8.527 6.031 1.00 27.99 N HETATM 1057 N2 NCO B 102 14.243 6.794 4.778 1.00 22.66 N HETATM 1058 N3 NCO B 102 12.239 8.871 4.584 1.00 29.71 N HETATM 1059 N4 NCO B 102 13.589 10.306 6.961 1.00 21.26 N HETATM 1060 N5 NCO B 102 13.508 7.296 7.216 1.00 15.95 N HETATM 1061 N6 NCO B 102 14.695 9.813 3.986 1.00 24.78 N HETATM 1062 CO NCO A 101 7.723 -8.597 7.409 1.00 28.22 CO HETATM 1063 N1 NCO A 101 9.593 -7.889 7.449 1.00 29.73 N HETATM 1064 N2 NCO A 101 7.918 -10.463 5.880 1.00 33.32 N HETATM 1065 N3 NCO A 101 5.659 -9.423 7.636 1.00 15.17 N HETATM 1066 N4 NCO A 101 7.296 -6.849 8.833 1.00 18.70 N HETATM 1067 N5 NCO A 101 8.313 -9.667 9.342 1.00 23.61 N HETATM 1068 N6 NCO A 101 6.910 -7.734 5.935 1.00 23.73 N HETATM 1069 AG1 0KA A 102 23.845 13.891 16.967 1.00 18.84 AG HETATM 1070 FE1 0KA A 102 24.183 10.997 17.509 1.00 18.49 FE HETATM 1071 FE2 0KA A 102 23.056 12.332 19.575 1.00 14.06 FE HETATM 1072 FE3 0KA A 102 21.574 11.542 17.564 1.00 14.12 FE HETATM 1073 S1 0KA A 102 23.051 11.532 15.634 1.00 12.51 S HETATM 1074 S2 0KA A 102 22.651 10.225 19.199 1.00 13.08 S HETATM 1075 S3 0KA A 102 21.580 13.504 18.427 1.00 15.53 S HETATM 1076 S4 0KA A 102 25.170 12.697 18.770 1.00 18.19 S HETATM 1077 CO NCO A 103 9.931 16.469 23.774 1.00 30.16 CO HETATM 1078 N1 NCO A 103 11.467 16.584 24.994 1.00 21.67 N HETATM 1079 N2 NCO A 103 8.281 15.949 22.602 1.00 21.37 N HETATM 1080 N3 NCO A 103 10.719 13.956 23.186 1.00 18.52 N HETATM 1081 N4 NCO A 103 9.759 18.228 23.490 1.00 9.45 N HETATM 1082 N5 NCO A 103 8.417 15.665 25.509 1.00 29.68 N HETATM 1083 N6 NCO A 103 11.034 17.399 22.136 1.00 10.99 N HETATM 1084 CO NCO A 104 30.589 6.643 12.806 1.00 28.73 CO HETATM 1085 N1 NCO A 104 31.492 5.106 13.713 1.00 30.49 N HETATM 1086 N2 NCO A 104 29.838 4.933 11.702 1.00 18.07 N HETATM 1087 N3 NCO A 104 29.345 8.514 11.795 1.00 18.59 N HETATM 1088 N4 NCO A 104 31.295 8.344 13.697 1.00 24.45 N HETATM 1089 N5 NCO A 104 28.717 6.215 14.063 1.00 21.66 N HETATM 1090 N6 NCO A 104 31.580 7.253 10.749 1.00 32.24 N HETATM 1091 O HOH B 201 -0.662 10.811 18.660 1.00 29.28 O HETATM 1092 O HOH B 202 -1.453 -8.289 3.882 1.00 15.23 O HETATM 1093 O HOH B 203 12.988 -3.261 3.953 1.00 31.55 O HETATM 1094 O HOH B 204 -7.041 -10.164 21.535 1.00 22.48 O HETATM 1095 O HOH B 205 9.894 -2.849 11.008 1.00 23.21 O HETATM 1096 O HOH B 206 -6.378 3.722 5.069 1.00 33.37 O HETATM 1097 O HOH B 207 -5.519 4.245 16.370 1.00 28.37 O HETATM 1098 O HOH B 208 5.988 2.398 15.154 1.00 22.94 O HETATM 1099 O HOH B 209 -3.689 6.165 15.839 1.00 12.97 O HETATM 1100 O HOH B 210 -8.395 -5.168 5.740 1.00 21.71 O HETATM 1101 O HOH B 211 -7.777 -2.692 7.863 1.00 15.50 O HETATM 1102 O HOH B 212 -16.116 -5.930 13.326 1.00 14.15 O HETATM 1103 O HOH B 213 2.989 2.893 15.140 1.00 13.75 O HETATM 1104 O HOH B 214 -1.264 17.780 5.983 1.00 17.29 O HETATM 1105 O HOH B 215 17.013 11.615 5.257 1.00 25.76 O HETATM 1106 O HOH B 216 -3.452 8.536 1.525 1.00 24.88 O HETATM 1107 O HOH B 217 -1.160 6.043 1.220 1.00 30.74 O HETATM 1108 O HOH B 218 3.975 -5.455 18.529 1.00 28.38 O HETATM 1109 O HOH B 219 9.336 -1.822 -1.159 1.00 29.49 O HETATM 1110 O HOH B 220 -16.205 3.596 15.994 1.00 28.30 O HETATM 1111 O HOH B 221 5.568 -11.136 14.643 1.00 30.41 O HETATM 1112 O HOH B 222 7.659 10.318 5.136 1.00 19.49 O HETATM 1113 O HOH B 223 1.356 2.496 23.843 1.00 32.62 O HETATM 1114 O HOH B 224 13.601 1.181 6.560 1.00 23.88 O HETATM 1115 O HOH B 225 4.511 -4.115 22.482 1.00 26.01 O HETATM 1116 O HOH B 226 -9.545 2.780 11.227 1.00 29.07 O HETATM 1117 O HOH B 227 8.328 0.572 17.069 1.00 38.00 O HETATM 1118 O HOH B 228 -9.737 4.693 13.839 1.00 32.33 O HETATM 1119 O HOH B 229 12.931 6.332 1.097 1.00 35.76 O HETATM 1120 O HOH B 230 4.127 10.205 2.441 1.00 31.78 O HETATM 1121 O HOH B 231 -11.617 3.411 17.969 1.00 31.20 O HETATM 1122 O HOH B 232 16.622 -0.553 2.824 1.00 39.53 O HETATM 1123 O HOH B 233 -12.846 -5.930 24.209 1.00 37.35 O HETATM 1124 O HOH B 234 -11.713 -8.310 24.147 1.00 44.01 O HETATM 1125 O HOH B 235 2.558 4.541 24.261 1.00 46.73 O HETATM 1126 O HOH B 236 -14.791 -6.585 23.819 1.00 35.42 O HETATM 1127 O HOH B 237 15.917 2.510 5.903 1.00 27.16 O HETATM 1128 O HOH B 238 3.923 14.299 5.533 1.00 29.46 O HETATM 1129 O HOH B 239 -5.364 6.990 9.889 1.00 27.13 O HETATM 1130 O HOH B 240 -16.502 2.571 13.995 1.00 27.12 O HETATM 1131 O HOH B 241 1.945 12.110 2.434 1.00 38.70 O HETATM 1132 O HOH B 242 4.023 1.219 -1.381 1.00 27.30 O HETATM 1133 O HOH B 243 -0.765 -6.623 1.413 1.00 20.97 O HETATM 1134 O HOH B 244 4.227 -6.298 7.128 1.00 28.54 O HETATM 1135 O HOH B 245 -3.703 -1.519 27.625 1.00 32.64 O HETATM 1136 O HOH B 246 -2.679 9.460 13.144 1.00 34.26 O HETATM 1137 O HOH B 247 -11.105 1.216 6.509 1.00 39.30 O HETATM 1138 O HOH B 248 -0.089 -4.117 -1.085 1.00 38.26 O HETATM 1139 O HOH B 249 -6.692 -8.765 11.888 1.00 30.90 O HETATM 1140 O HOH B 250 -2.377 2.994 21.981 1.00 52.68 O HETATM 1141 O HOH B 251 -1.011 8.139 21.561 1.00 37.59 O HETATM 1142 O HOH B 252 -6.366 -7.077 1.125 1.00 23.69 O HETATM 1143 O HOH B 253 1.453 -11.811 4.176 1.00 32.72 O HETATM 1144 O HOH A 201 22.932 -3.503 14.308 1.00 25.42 O HETATM 1145 O HOH A 202 9.214 -1.835 17.742 1.00 21.85 O HETATM 1146 O HOH A 203 12.023 -8.811 9.304 1.00 17.33 O HETATM 1147 O HOH A 204 30.641 13.442 22.885 1.00 22.86 O HETATM 1148 O HOH A 205 26.643 19.322 22.279 1.00 18.13 O HETATM 1149 O HOH A 206 10.558 10.977 16.572 1.00 14.67 O HETATM 1150 O HOH A 207 33.471 11.530 17.246 1.00 29.61 O HETATM 1151 O HOH A 208 13.491 13.756 8.396 1.00 23.49 O HETATM 1152 O HOH A 209 19.752 12.913 29.214 1.00 25.18 O HETATM 1153 O HOH A 210 17.478 2.193 25.370 1.00 24.57 O HETATM 1154 O HOH A 211 6.804 -8.852 3.008 1.00 46.41 O HETATM 1155 O HOH A 212 7.507 9.067 15.563 1.00 33.10 O HETATM 1156 O HOH A 213 7.537 4.690 15.631 1.00 28.34 O HETATM 1157 O HOH A 214 20.071 0.890 7.069 1.00 21.11 O HETATM 1158 O HOH A 215 26.413 5.367 16.473 1.00 24.75 O HETATM 1159 O HOH A 216 10.291 16.022 31.589 1.00 41.65 O HETATM 1160 O HOH A 217 6.724 -10.036 11.441 1.00 21.06 O HETATM 1161 O HOH A 218 8.852 13.239 20.991 1.00 27.08 O HETATM 1162 O HOH A 219 23.819 6.647 7.619 1.00 25.20 O HETATM 1163 O HOH A 220 11.538 7.204 10.436 1.00 16.19 O HETATM 1164 O HOH A 221 6.774 -4.703 4.232 1.00 31.69 O HETATM 1165 O HOH A 222 6.738 6.605 13.711 1.00 22.11 O HETATM 1166 O HOH A 223 22.722 -6.518 14.452 1.00 20.70 O HETATM 1167 O HOH A 224 25.150 19.905 25.021 1.00 31.48 O HETATM 1168 O HOH A 225 21.729 -0.960 22.699 1.00 19.58 O HETATM 1169 O HOH A 226 21.870 8.280 5.498 1.00 23.43 O HETATM 1170 O HOH A 227 34.029 10.883 19.543 1.00 32.33 O HETATM 1171 O HOH A 228 27.630 12.357 11.046 1.00 21.53 O HETATM 1172 O HOH A 229 16.747 21.986 28.734 1.00 34.53 O HETATM 1173 O HOH A 230 32.556 9.041 20.389 1.00 30.26 O HETATM 1174 O HOH A 231 19.272 9.886 3.312 1.00 45.67 O HETATM 1175 O HOH A 232 6.093 1.593 27.929 1.00 27.62 O HETATM 1176 O HOH A 233 2.210 1.903 28.190 1.00 31.44 O HETATM 1177 O HOH A 234 8.451 2.882 28.340 1.00 30.20 O HETATM 1178 O HOH A 235 7.350 -4.965 11.955 1.00 14.02 O HETATM 1179 O HOH A 236 25.610 -1.522 17.848 1.00 23.44 O HETATM 1180 O HOH A 237 14.937 16.346 8.475 1.00 31.89 O HETATM 1181 O HOH A 238 24.302 3.690 23.026 1.00 21.76 O HETATM 1182 O HOH A 239 8.195 6.805 24.377 1.00 26.70 O HETATM 1183 O HOH A 240 12.760 20.623 28.393 1.00 30.57 O HETATM 1184 O HOH A 241 11.474 13.976 27.580 1.00 27.15 O HETATM 1185 O HOH A 242 6.630 11.310 15.988 1.00 29.52 O HETATM 1186 O HOH A 243 14.954 -0.693 21.431 1.00 38.89 O HETATM 1187 O HOH A 244 15.858 -2.617 26.691 1.00 42.62 O HETATM 1188 O HOH A 245 13.205 14.347 28.484 1.00 42.44 O CONECT 93 1049 CONECT 111 1047 CONECT 130 1050 CONECT 161 397 CONECT 397 161 CONECT 453 1048 CONECT 619 1071 CONECT 637 1069 CONECT 656 1072 CONECT 692 916 CONECT 693 917 CONECT 916 692 CONECT 917 693 CONECT 973 1070 CONECT 1047 111 1051 1053 1054 CONECT 1048 453 1051 1052 1054 CONECT 1049 93 1052 1053 1054 CONECT 1050 130 1051 1052 1053 CONECT 1051 1047 1048 1050 CONECT 1052 1048 1049 1050 CONECT 1053 1047 1049 1050 CONECT 1054 1047 1048 1049 CONECT 1055 1056 1057 1058 1059 CONECT 1055 1060 1061 CONECT 1056 1055 CONECT 1057 1055 CONECT 1058 1055 CONECT 1059 1055 CONECT 1060 1055 CONECT 1061 1055 CONECT 1062 1063 1064 1065 1066 CONECT 1062 1067 1068 CONECT 1063 1062 CONECT 1064 1062 CONECT 1065 1062 CONECT 1066 1062 CONECT 1067 1062 CONECT 1068 1062 CONECT 1069 637 1073 1075 1076 CONECT 1070 973 1073 1074 1076 CONECT 1071 619 1074 1075 1076 CONECT 1072 656 1073 1074 1075 CONECT 1073 1069 1070 1072 CONECT 1074 1070 1071 1072 CONECT 1075 1069 1071 1072 CONECT 1076 1069 1070 1071 CONECT 1077 1078 1079 1080 1081 CONECT 1077 1082 1083 CONECT 1078 1077 CONECT 1079 1077 CONECT 1080 1077 CONECT 1081 1077 CONECT 1082 1077 CONECT 1083 1077 CONECT 1084 1085 1086 1087 1088 CONECT 1084 1089 1090 CONECT 1085 1084 CONECT 1086 1084 CONECT 1087 1084 CONECT 1088 1084 CONECT 1089 1084 CONECT 1090 1084 MASTER 361 0 6 4 9 0 15 6 1130 2 62 12 END