HEADER OXIDOREDUCTASE 30-JAN-12 4DI0 TITLE THE STRUCTURE OF RUBRERYTHRIN FROM BURKHOLDERIA PSEUDOMALLEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUBRERYTHRIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 320372; SOURCE 4 STRAIN: 1710B; SOURCE 5 GENE: BURPS1710B_A0924; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 2 PEROXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 13-SEP-23 4DI0 1 REMARK SEQADV LINK REVDAT 1 08-FEB-12 4DI0 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID) JRNL TITL THE STRUCTURE OF RUBRERYTHRIN FROM BURKHOLDERIA PSEUDOMALLEI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 22862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1180 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1407 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2141 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.911 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2232 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1485 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3017 ; 1.269 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3596 ; 0.945 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 289 ; 4.728 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;39.027 ;24.359 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 344 ;12.553 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.001 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 315 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2597 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 481 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 65 REMARK 3 ORIGIN FOR THE GROUP (A): 45.3137 56.5598 9.7667 REMARK 3 T TENSOR REMARK 3 T11: 0.0688 T22: 0.0480 REMARK 3 T33: 0.0845 T12: 0.0160 REMARK 3 T13: -0.0134 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.8527 L22: 0.8878 REMARK 3 L33: 1.2317 L12: 0.4771 REMARK 3 L13: -1.0025 L23: -0.2778 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: 0.0464 S13: 0.0109 REMARK 3 S21: 0.0393 S22: -0.0059 S23: -0.0621 REMARK 3 S31: -0.0105 S32: -0.0289 S33: 0.0093 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 66 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): 45.8427 39.9315 21.4364 REMARK 3 T TENSOR REMARK 3 T11: 0.1079 T22: 0.0586 REMARK 3 T33: 0.0797 T12: -0.0049 REMARK 3 T13: 0.0038 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.7306 L22: 2.7573 REMARK 3 L33: 1.8040 L12: -0.7640 REMARK 3 L13: -0.0809 L23: 0.4893 REMARK 3 S TENSOR REMARK 3 S11: -0.0480 S12: -0.0383 S13: -0.0786 REMARK 3 S21: 0.1316 S22: 0.0579 S23: 0.1215 REMARK 3 S31: 0.0749 S32: -0.1552 S33: -0.0099 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): 52.2574 33.5421 2.0095 REMARK 3 T TENSOR REMARK 3 T11: 0.0762 T22: 0.0729 REMARK 3 T33: 0.0924 T12: 0.0090 REMARK 3 T13: 0.0094 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 0.5783 L22: 1.1520 REMARK 3 L33: 4.9548 L12: -0.0376 REMARK 3 L13: 1.1134 L23: 0.8092 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: 0.0338 S13: -0.0620 REMARK 3 S21: 0.0964 S22: -0.0090 S23: -0.0278 REMARK 3 S31: 0.1673 S32: -0.0267 S33: 0.0349 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 56.6652 37.6199 26.6740 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.0148 REMARK 3 T33: 0.0800 T12: 0.0119 REMARK 3 T13: -0.0361 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 5.3618 L22: 5.5106 REMARK 3 L33: 12.9643 L12: -0.6016 REMARK 3 L13: 1.4705 L23: -0.5209 REMARK 3 S TENSOR REMARK 3 S11: -0.0561 S12: -0.0159 S13: 0.0727 REMARK 3 S21: 0.1524 S22: 0.1203 S23: -0.1935 REMARK 3 S31: -0.3002 S32: 0.1915 S33: -0.0642 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 64 REMARK 3 ORIGIN FOR THE GROUP (A): 51.2541 46.0725 10.6700 REMARK 3 T TENSOR REMARK 3 T11: 0.0616 T22: 0.0409 REMARK 3 T33: 0.0949 T12: 0.0039 REMARK 3 T13: -0.0070 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.6525 L22: 1.0061 REMARK 3 L33: 3.4284 L12: -0.1023 REMARK 3 L13: 0.6186 L23: 0.7196 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: 0.0588 S13: 0.0141 REMARK 3 S21: 0.0746 S22: -0.0046 S23: -0.0717 REMARK 3 S31: -0.0014 S32: 0.0412 S33: 0.0044 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 65 B 91 REMARK 3 ORIGIN FOR THE GROUP (A): 45.7967 57.6573 -5.2743 REMARK 3 T TENSOR REMARK 3 T11: 0.1001 T22: 0.1216 REMARK 3 T33: 0.0886 T12: -0.0032 REMARK 3 T13: 0.0192 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.7174 L22: 1.4608 REMARK 3 L33: 1.0169 L12: -0.7770 REMARK 3 L13: 0.3243 L23: 0.5951 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: 0.2444 S13: 0.0038 REMARK 3 S21: -0.1643 S22: -0.0445 S23: 0.0005 REMARK 3 S31: -0.0137 S32: -0.0906 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 92 B 129 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6235 62.4036 12.2907 REMARK 3 T TENSOR REMARK 3 T11: 0.0549 T22: 0.0685 REMARK 3 T33: 0.0667 T12: 0.0420 REMARK 3 T13: -0.0158 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 3.0114 L22: 2.1505 REMARK 3 L33: 3.0307 L12: 1.5499 REMARK 3 L13: -1.9862 L23: -1.4964 REMARK 3 S TENSOR REMARK 3 S11: -0.0177 S12: 0.0796 S13: 0.0854 REMARK 3 S21: 0.0578 S22: 0.0069 S23: 0.0645 REMARK 3 S31: -0.0827 S32: -0.1828 S33: 0.0108 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 130 B 139 REMARK 3 ORIGIN FOR THE GROUP (A): 48.4716 70.5864 -3.4351 REMARK 3 T TENSOR REMARK 3 T11: 0.1760 T22: 0.1225 REMARK 3 T33: 0.1463 T12: 0.0864 REMARK 3 T13: -0.0150 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 3.8388 L22: 1.9863 REMARK 3 L33: 4.1685 L12: 1.1302 REMARK 3 L13: -2.8814 L23: 0.9400 REMARK 3 S TENSOR REMARK 3 S11: 0.1556 S12: 0.0108 S13: 0.2594 REMARK 3 S21: -0.0784 S22: 0.0555 S23: 0.0301 REMARK 3 S31: -0.3436 S32: -0.0313 S33: -0.2111 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 4DI0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070353. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22862 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PDB ENTRY 1J30 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUPSA.17633.A AT 29.52 MG/ML, 16% REMARK 280 PEG8000, 20% GLYCEROL, 40MM POTASSIUM PHOSPHATE. ADDITIONAL REMARK 280 ETHYLENE GLYCOL AS CRYOPROTECTANT, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.29000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.53500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.23500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.53500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.29000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.23500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 ASP A 140 CG OD1 OD2 REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 LYS B 133 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 10 O2 GOL B 203 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 96 -58.63 -121.16 REMARK 500 ASP B 96 -51.81 -120.01 REMARK 500 PHE B 110 79.46 -102.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 20 OE2 REMARK 620 2 GLU A 20 OE1 59.9 REMARK 620 3 GLU A 53 OE2 151.4 91.5 REMARK 620 4 HIS A 56 ND1 94.1 98.8 90.8 REMARK 620 5 HOH A 390 O 83.8 85.0 93.7 174.1 REMARK 620 6 GLU B 124 OE2 101.2 158.8 106.9 91.5 83.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 124 OE2 REMARK 620 2 GLU B 20 OE1 154.0 REMARK 620 3 GLU B 20 OE2 99.7 59.9 REMARK 620 4 GLU B 53 OE2 104.1 92.5 151.4 REMARK 620 5 HIS B 56 ND1 94.0 104.6 99.2 94.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 202 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 90 OE2 REMARK 620 2 GLU B 90 OE1 54.2 REMARK 620 3 GLU B 124 OE1 114.4 61.1 REMARK 620 4 HIS B 127 ND1 109.3 117.1 107.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUPSA.17633.A RELATED DB: TARGETTRACK DBREF 4DI0 A 1 140 UNP Q3JK21 Q3JK21_BURP1 1 140 DBREF 4DI0 B 1 140 UNP Q3JK21 Q3JK21_BURP1 1 140 SEQADV 4DI0 GLY A -3 UNP Q3JK21 EXPRESSION TAG SEQADV 4DI0 PRO A -2 UNP Q3JK21 EXPRESSION TAG SEQADV 4DI0 GLY A -1 UNP Q3JK21 EXPRESSION TAG SEQADV 4DI0 SER A 0 UNP Q3JK21 EXPRESSION TAG SEQADV 4DI0 GLY B -3 UNP Q3JK21 EXPRESSION TAG SEQADV 4DI0 PRO B -2 UNP Q3JK21 EXPRESSION TAG SEQADV 4DI0 GLY B -1 UNP Q3JK21 EXPRESSION TAG SEQADV 4DI0 SER B 0 UNP Q3JK21 EXPRESSION TAG SEQRES 1 A 144 GLY PRO GLY SER MET ALA GLN LEU LYS GLY SER LYS THR SEQRES 2 A 144 GLU GLU ASN LEU LYS TYR ALA PHE ALA GLY GLU SER GLN SEQRES 3 A 144 ALA ASN ARG ARG TYR LEU TYR PHE ALA SER LYS ALA ASP SEQRES 4 A 144 VAL GLU GLY GLN ASN ASP ILE ALA ALA LEU PHE ARG SER SEQRES 5 A 144 THR ALA GLU GLY GLU THR GLY HIS ALA HIS GLY HIS LEU SEQRES 6 A 144 GLU TYR LEU GLU ALA VAL GLY ASP PRO ALA THR GLY LEU SEQRES 7 A 144 PRO PHE GLY THR SER ARG GLN ASN LEU GLN SER ALA ILE SEQRES 8 A 144 ALA GLY GLU THR HIS GLU TYR THR ASP MET TYR PRO GLY SEQRES 9 A 144 MET ALA LYS THR ALA ARG ASP GLU GLY PHE GLU GLU ILE SEQRES 10 A 144 ALA ASN TRP PHE GLU THR LEU ALA LYS ALA GLU ARG SER SEQRES 11 A 144 HIS ALA ASN ARG TYR THR LYS ALA LEU ASP GLY LEU VAL SEQRES 12 A 144 ASP SEQRES 1 B 144 GLY PRO GLY SER MET ALA GLN LEU LYS GLY SER LYS THR SEQRES 2 B 144 GLU GLU ASN LEU LYS TYR ALA PHE ALA GLY GLU SER GLN SEQRES 3 B 144 ALA ASN ARG ARG TYR LEU TYR PHE ALA SER LYS ALA ASP SEQRES 4 B 144 VAL GLU GLY GLN ASN ASP ILE ALA ALA LEU PHE ARG SER SEQRES 5 B 144 THR ALA GLU GLY GLU THR GLY HIS ALA HIS GLY HIS LEU SEQRES 6 B 144 GLU TYR LEU GLU ALA VAL GLY ASP PRO ALA THR GLY LEU SEQRES 7 B 144 PRO PHE GLY THR SER ARG GLN ASN LEU GLN SER ALA ILE SEQRES 8 B 144 ALA GLY GLU THR HIS GLU TYR THR ASP MET TYR PRO GLY SEQRES 9 B 144 MET ALA LYS THR ALA ARG ASP GLU GLY PHE GLU GLU ILE SEQRES 10 B 144 ALA ASN TRP PHE GLU THR LEU ALA LYS ALA GLU ARG SER SEQRES 11 B 144 HIS ALA ASN ARG TYR THR LYS ALA LEU ASP GLY LEU VAL SEQRES 12 B 144 ASP HET FE A 201 1 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET FE B 201 1 HET FE B 202 1 HET GOL B 203 6 HET EDO B 204 4 HETNAM FE FE (III) ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FE 3(FE 3+) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 9 GOL C3 H8 O3 FORMUL 11 HOH *187(H2 O) HELIX 1 1 SER A 7 GLY A 38 1 32 HELIX 2 2 GLN A 39 GLU A 65 1 27 HELIX 3 3 THR A 78 ASP A 96 1 19 HELIX 4 4 ASP A 96 GLY A 109 1 14 HELIX 5 5 PHE A 110 GLY A 137 1 28 HELIX 6 6 MET B 1 LYS B 5 5 5 HELIX 7 7 SER B 7 GLY B 38 1 32 HELIX 8 8 GLN B 39 GLU B 65 1 27 HELIX 9 9 THR B 78 ASP B 96 1 19 HELIX 10 10 ASP B 96 GLU B 108 1 13 HELIX 11 11 PHE B 110 GLY B 137 1 28 LINK OE2 GLU A 20 FE FE A 201 1555 1555 2.17 LINK OE1 GLU A 20 FE FE A 201 1555 1555 2.20 LINK OE2 GLU A 53 FE FE A 201 1555 1555 2.17 LINK ND1 HIS A 56 FE FE A 201 1555 1555 2.18 LINK OE2 GLU A 124 FE FE B 201 1555 1555 2.11 LINK FE FE A 201 O HOH A 390 1555 1555 2.39 LINK FE FE A 201 OE2 GLU B 124 1555 1555 1.98 LINK OE1 GLU B 20 FE FE B 201 1555 1555 2.14 LINK OE2 GLU B 20 FE FE B 201 1555 1555 2.24 LINK OE2 GLU B 53 FE FE B 201 1555 1555 2.12 LINK ND1 HIS B 56 FE FE B 201 1555 1555 2.08 LINK OE2 GLU B 90 FE FE B 202 1555 1555 2.15 LINK OE1 GLU B 90 FE FE B 202 1555 1555 2.62 LINK OE1 GLU B 124 FE FE B 202 1555 1555 1.82 LINK ND1 HIS B 127 FE FE B 202 1555 1555 1.87 SITE 1 AC1 5 GLU A 20 GLU A 53 HIS A 56 HOH A 390 SITE 2 AC1 5 GLU B 124 SITE 1 AC2 2 LEU A 4 LYS A 5 SITE 1 AC3 8 GLU A 10 LYS A 14 LEU A 64 VAL A 67 SITE 2 AC3 8 GLY A 68 ASP A 69 PRO A 70 GLY A 73 SITE 1 AC4 3 THR A 54 HIS A 58 ARG B 25 SITE 1 AC5 4 GLU A 124 GLU B 20 GLU B 53 HIS B 56 SITE 1 AC6 4 GLU A 53 GLU B 90 GLU B 124 HIS B 127 SITE 1 AC7 7 GLU B 10 LYS B 14 VAL B 67 GLY B 68 SITE 2 AC7 7 ASP B 69 PRO B 70 GLY B 73 SITE 1 AC8 4 ARG A 25 THR B 54 ALA B 57 HIS B 58 CRYST1 50.580 56.470 99.070 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019771 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010094 0.00000