HEADER PROTEIN BINDING 01-FEB-12 4DJ3 TITLE UNWINDING THE DIFFERENCES OF THE MAMMALIAN PERIOD CLOCK PROTEINS FROM TITLE 2 CRYSTAL STRUCTURE TO CELLULAR FUNCTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIOD CIRCADIAN PROTEIN HOMOLOG 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MPER3, CIRCADIAN CLOCK PROTEIN PERIOD 3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PER3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P1 KEYWDS PAS DOMAIN, CIRCADIAN RHYTHM, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR E.WOLF,N.KUCERA,S.HENNIG REVDAT 3 28-FEB-24 4DJ3 1 SEQADV REVDAT 2 14-MAR-12 4DJ3 1 JRNL REVDAT 1 29-FEB-12 4DJ3 0 JRNL AUTH N.KUCERA,I.SCHMALEN,S.HENNIG,R.OLLINGER,H.M.STRAUSS, JRNL AUTH 2 A.GRUDZIECKI,C.WIECZOREK,A.KRAMER,E.WOLF JRNL TITL UNWINDING THE DIFFERENCES OF THE MAMMALIAN PERIOD CLOCK JRNL TITL 2 PROTEINS FROM CRYSTAL STRUCTURE TO CELLULAR FUNCTION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 3311 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22331899 JRNL DOI 10.1073/PNAS.1113280109 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1121 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1548 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4307 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.31000 REMARK 3 B22 (A**2) : -2.28000 REMARK 3 B33 (A**2) : 3.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.618 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.337 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.253 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.120 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4425 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6043 ; 1.806 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 555 ; 8.025 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;32.236 ;22.697 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 645 ;20.642 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;20.620 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 699 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3369 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2826 ; 0.889 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4540 ; 1.641 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1599 ; 2.109 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1503 ; 3.413 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DJ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070392. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22419 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 18% PEG 6000, PH 5.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.32000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 95 REMARK 465 PRO A 96 REMARK 465 LEU A 97 REMARK 465 GLY A 98 REMARK 465 SER A 99 REMARK 465 PRO A 100 REMARK 465 GLU A 101 REMARK 465 PHE A 102 REMARK 465 PRO A 103 REMARK 465 ASN A 192 REMARK 465 TRP A 193 REMARK 465 THR A 194 REMARK 465 GLN A 195 REMARK 465 ARG A 196 REMARK 465 ALA A 197 REMARK 465 SER A 198 REMARK 465 GLN A 199 REMARK 465 TYR A 200 REMARK 465 GLU A 201 REMARK 465 GLY B 95 REMARK 465 PRO B 96 REMARK 465 LEU B 97 REMARK 465 GLY B 98 REMARK 465 SER B 99 REMARK 465 PRO B 100 REMARK 465 GLU B 101 REMARK 465 PHE B 102 REMARK 465 PRO B 103 REMARK 465 GLY B 104 REMARK 465 ARG B 105 REMARK 465 LEU B 106 REMARK 465 GLU B 107 REMARK 465 ASP B 108 REMARK 465 VAL B 109 REMARK 465 THR B 110 REMARK 465 VAL B 111 REMARK 465 TYR B 112 REMARK 465 SER B 113 REMARK 465 LEU B 114 REMARK 465 GLU B 115 REMARK 465 ASP B 116 REMARK 465 LEU B 117 REMARK 465 THR B 118 REMARK 465 LYS B 157 REMARK 465 ARG B 158 REMARK 465 GLY B 159 REMARK 465 PHE B 160 REMARK 465 LEU B 161 REMARK 465 LYS B 162 REMARK 465 SER B 163 REMARK 465 VAL B 164 REMARK 465 THR B 194 REMARK 465 GLN B 195 REMARK 465 ARG B 196 REMARK 465 ALA B 197 REMARK 465 SER B 198 REMARK 465 GLN B 199 REMARK 465 TYR B 200 REMARK 465 GLU B 201 REMARK 465 CYS B 202 REMARK 465 ALA B 203 REMARK 465 GLY B 214 REMARK 465 GLY B 215 REMARK 465 GLY B 216 REMARK 465 ASP B 217 REMARK 465 ARG B 218 REMARK 465 PRO B 241 REMARK 465 GLU B 242 REMARK 465 ALA B 389 REMARK 465 ALA B 390 REMARK 465 SER B 391 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 106 CG CD1 CD2 REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 VAL A 109 CG1 CG2 REMARK 470 ARG A 142 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 SER A 163 OG REMARK 470 ARG A 176 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 186 CG CD OE1 NE2 REMARK 470 ASN A 191 CG OD1 ND2 REMARK 470 CYS A 202 SG REMARK 470 PRO A 204 CG CD REMARK 470 GLU A 219 CG CD OE1 OE2 REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 HIS A 236 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 240 CG CD OE1 NE2 REMARK 470 PRO A 241 CG CD REMARK 470 GLU A 242 CG CD OE1 OE2 REMARK 470 ARG A 385 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 387 CG CD CE NZ REMARK 470 LYS A 388 CG CD CE NZ REMARK 470 SER A 391 OG REMARK 470 ASN A 392 CG OD1 ND2 REMARK 470 ASP A 393 CG OD1 OD2 REMARK 470 LYS A 394 CG CD CE NZ REMARK 470 ASP A 395 CG OD1 OD2 REMARK 470 GLU A 401 CG CD OE1 OE2 REMARK 470 GLN A 409 CG CD OE1 NE2 REMARK 470 PRO A 410 CG CD REMARK 470 ARG B 142 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 146 CG1 CG2 CD1 REMARK 470 LEU B 152 CG CD1 CD2 REMARK 470 ILE B 153 CG1 CG2 CD1 REMARK 470 ASN B 155 CG OD1 ND2 REMARK 470 SER B 156 OG REMARK 470 HIS B 165 CG ND1 CD2 CE1 NE2 REMARK 470 TRP B 193 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 193 CZ3 CH2 REMARK 470 PRO B 204 CG CD REMARK 470 ILE B 212 CG1 CG2 CD1 REMARK 470 CYS B 213 SG REMARK 470 GLU B 219 CG CD OE1 OE2 REMARK 470 ARG B 221 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 222 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 240 CG CD OE1 NE2 REMARK 470 PRO B 243 CG CD REMARK 470 PRO B 245 CG CD REMARK 470 PRO B 261 CG CD REMARK 470 ARG B 262 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 266 CG OD1 OD2 REMARK 470 GLU B 282 CG CD OE1 OE2 REMARK 470 LYS B 321 CG CD CE NZ REMARK 470 TYR B 325 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 344 CG CD OE1 OE2 REMARK 470 LEU B 377 CG CD1 CD2 REMARK 470 THR B 384 OG1 CG2 REMARK 470 ASN B 392 CG OD1 ND2 REMARK 470 LYS B 394 CG CD CE NZ REMARK 470 GLU B 398 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 152 CB - CG - CD2 ANGL. DEV. = -11.2 DEGREES REMARK 500 PRO A 410 N - CA - CB ANGL. DEV. = 7.7 DEGREES REMARK 500 PRO B 243 N - CA - CB ANGL. DEV. = 7.8 DEGREES REMARK 500 PRO B 261 N - CA - CB ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 105 85.68 -26.42 REMARK 500 THR A 110 89.61 77.20 REMARK 500 SER A 113 152.69 76.67 REMARK 500 ASN A 128 -168.78 -164.79 REMARK 500 PRO A 184 10.69 -61.27 REMARK 500 TRP A 190 85.28 133.85 REMARK 500 PRO A 204 116.65 -171.67 REMARK 500 ALA A 205 98.13 113.25 REMARK 500 GLU A 219 -50.06 -152.58 REMARK 500 VAL A 235 -91.38 -135.35 REMARK 500 SER A 237 -178.46 121.75 REMARK 500 ALA A 239 -112.08 -77.55 REMARK 500 PRO A 241 -45.52 -139.78 REMARK 500 GLU A 244 103.85 36.65 REMARK 500 SER A 256 126.46 -36.89 REMARK 500 ALA A 260 -120.49 58.97 REMARK 500 PRO A 261 -80.44 -36.87 REMARK 500 ARG A 262 88.86 88.49 REMARK 500 ILE A 263 121.28 -21.00 REMARK 500 HIS A 333 -138.91 -145.38 REMARK 500 SER A 353 -169.28 -162.94 REMARK 500 TRP A 359 -63.90 -95.17 REMARK 500 ASN A 378 99.07 -69.29 REMARK 500 ALA A 389 76.97 -107.77 REMARK 500 SER A 391 116.81 60.04 REMARK 500 ASN A 392 -12.41 169.90 REMARK 500 LYS A 394 -73.01 -73.02 REMARK 500 LEU B 120 24.82 -169.25 REMARK 500 ALA B 121 -133.45 -112.64 REMARK 500 SER B 122 31.68 -146.43 REMARK 500 GLU B 123 -129.53 -135.53 REMARK 500 LYS B 127 -143.87 -143.41 REMARK 500 ASN B 128 149.36 176.68 REMARK 500 THR B 129 80.19 63.20 REMARK 500 PHE B 138 -89.28 -78.59 REMARK 500 SER B 140 -98.15 172.34 REMARK 500 ALA B 151 96.57 -64.29 REMARK 500 LEU B 152 97.73 73.34 REMARK 500 ILE B 153 127.94 54.97 REMARK 500 PRO B 184 -33.08 -37.60 REMARK 500 ASN B 191 63.65 20.72 REMARK 500 ALA B 205 130.64 67.47 REMARK 500 LYS B 220 -71.95 -119.31 REMARK 500 HIS B 222 -52.99 -144.93 REMARK 500 TYR B 223 118.45 67.92 REMARK 500 ALA B 239 35.96 172.50 REMARK 500 GLU B 244 -142.70 -82.67 REMARK 500 CYS B 246 114.45 56.47 REMARK 500 GLU B 259 -152.73 -77.11 REMARK 500 ALA B 260 -94.49 -10.93 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GDI RELATED DB: PDB REMARK 900 MOUSE PERIOD 2 REMARK 900 RELATED ID: 4DJ2 RELATED DB: PDB REMARK 900 MOUSE PERIOD 1 REMARK 900 RELATED ID: 1WA9 RELATED DB: PDB REMARK 900 DROSOPHILA PERIOD DBREF 4DJ3 A 108 411 UNP O70361 PER3_MOUSE 108 411 DBREF 4DJ3 B 108 411 UNP O70361 PER3_MOUSE 108 411 SEQADV 4DJ3 GLY A 95 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 PRO A 96 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 LEU A 97 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 GLY A 98 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 SER A 99 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 PRO A 100 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 GLU A 101 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 PHE A 102 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 PRO A 103 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 GLY A 104 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 ARG A 105 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 LEU A 106 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 GLU A 107 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 GLY B 95 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 PRO B 96 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 LEU B 97 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 GLY B 98 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 SER B 99 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 PRO B 100 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 GLU B 101 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 PHE B 102 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 PRO B 103 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 GLY B 104 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 ARG B 105 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 LEU B 106 UNP O70361 EXPRESSION TAG SEQADV 4DJ3 GLU B 107 UNP O70361 EXPRESSION TAG SEQRES 1 A 317 GLY PRO LEU GLY SER PRO GLU PHE PRO GLY ARG LEU GLU SEQRES 2 A 317 ASP VAL THR VAL TYR SER LEU GLU ASP LEU THR ALA LEU SEQRES 3 A 317 ALA SER GLU HIS THR SER LYS ASN THR ASP THR PHE ALA SEQRES 4 A 317 ALA VAL PHE SER PHE LEU SER GLY ARG LEU VAL HIS ILE SEQRES 5 A 317 SER GLU GLN ALA ALA LEU ILE LEU ASN SER LYS ARG GLY SEQRES 6 A 317 PHE LEU LYS SER VAL HIS PHE VAL ASP LEU LEU ALA PRO SEQRES 7 A 317 GLN ASP VAL ARG ALA PHE TYR ALA HIS THR ALA PRO THR SEQRES 8 A 317 GLN LEU PRO PHE TRP ASN ASN TRP THR GLN ARG ALA SER SEQRES 9 A 317 GLN TYR GLU CYS ALA PRO ALA LYS PRO PHE PHE CYS ARG SEQRES 10 A 317 ILE CYS GLY GLY GLY ASP ARG GLU LYS ARG HIS TYR SER SEQRES 11 A 317 PRO PHE ARG ILE LEU PRO TYR LEU VAL HIS VAL HIS SER SEQRES 12 A 317 SER ALA GLN PRO GLU PRO GLU PRO CYS CYS LEU THR LEU SEQRES 13 A 317 VAL GLU LYS ILE HIS SER GLY TYR GLU ALA PRO ARG ILE SEQRES 14 A 317 PRO VAL ASP LYS ARG ILE PHE THR THR THR HIS THR PRO SEQRES 15 A 317 GLY CYS VAL PHE LEU GLU VAL ASP GLU ARG ALA VAL PRO SEQRES 16 A 317 LEU LEU GLY TYR LEU PRO GLN ASP LEU ILE GLY THR SER SEQRES 17 A 317 ILE LEU THR TYR LEU HIS PRO GLU ASP ARG PRO LEU MET SEQRES 18 A 317 VAL ALA ILE HIS GLN LYS VAL LEU LYS TYR ALA GLY HIS SEQRES 19 A 317 PRO PRO PHE GLU HIS SER PRO VAL ARG PHE CYS THR GLN SEQRES 20 A 317 ASN GLY GLU TYR VAL ILE LEU ASP SER SER TRP SER SER SEQRES 21 A 317 PHE VAL ASN PRO TRP SER ARG LYS VAL SER PHE ILE ILE SEQRES 22 A 317 GLY ARG HIS LYS VAL ARG THR SER PRO LEU ASN GLU ASP SEQRES 23 A 317 VAL PHE ALA THR ARG ILE LYS LYS ALA ALA SER ASN ASP SEQRES 24 A 317 LYS ASP ILE ALA GLU LEU GLN GLU GLN ILE HIS LYS LEU SEQRES 25 A 317 LEU LEU GLN PRO VAL SEQRES 1 B 317 GLY PRO LEU GLY SER PRO GLU PHE PRO GLY ARG LEU GLU SEQRES 2 B 317 ASP VAL THR VAL TYR SER LEU GLU ASP LEU THR ALA LEU SEQRES 3 B 317 ALA SER GLU HIS THR SER LYS ASN THR ASP THR PHE ALA SEQRES 4 B 317 ALA VAL PHE SER PHE LEU SER GLY ARG LEU VAL HIS ILE SEQRES 5 B 317 SER GLU GLN ALA ALA LEU ILE LEU ASN SER LYS ARG GLY SEQRES 6 B 317 PHE LEU LYS SER VAL HIS PHE VAL ASP LEU LEU ALA PRO SEQRES 7 B 317 GLN ASP VAL ARG ALA PHE TYR ALA HIS THR ALA PRO THR SEQRES 8 B 317 GLN LEU PRO PHE TRP ASN ASN TRP THR GLN ARG ALA SER SEQRES 9 B 317 GLN TYR GLU CYS ALA PRO ALA LYS PRO PHE PHE CYS ARG SEQRES 10 B 317 ILE CYS GLY GLY GLY ASP ARG GLU LYS ARG HIS TYR SER SEQRES 11 B 317 PRO PHE ARG ILE LEU PRO TYR LEU VAL HIS VAL HIS SER SEQRES 12 B 317 SER ALA GLN PRO GLU PRO GLU PRO CYS CYS LEU THR LEU SEQRES 13 B 317 VAL GLU LYS ILE HIS SER GLY TYR GLU ALA PRO ARG ILE SEQRES 14 B 317 PRO VAL ASP LYS ARG ILE PHE THR THR THR HIS THR PRO SEQRES 15 B 317 GLY CYS VAL PHE LEU GLU VAL ASP GLU ARG ALA VAL PRO SEQRES 16 B 317 LEU LEU GLY TYR LEU PRO GLN ASP LEU ILE GLY THR SER SEQRES 17 B 317 ILE LEU THR TYR LEU HIS PRO GLU ASP ARG PRO LEU MET SEQRES 18 B 317 VAL ALA ILE HIS GLN LYS VAL LEU LYS TYR ALA GLY HIS SEQRES 19 B 317 PRO PRO PHE GLU HIS SER PRO VAL ARG PHE CYS THR GLN SEQRES 20 B 317 ASN GLY GLU TYR VAL ILE LEU ASP SER SER TRP SER SER SEQRES 21 B 317 PHE VAL ASN PRO TRP SER ARG LYS VAL SER PHE ILE ILE SEQRES 22 B 317 GLY ARG HIS LYS VAL ARG THR SER PRO LEU ASN GLU ASP SEQRES 23 B 317 VAL PHE ALA THR ARG ILE LYS LYS ALA ALA SER ASN ASP SEQRES 24 B 317 LYS ASP ILE ALA GLU LEU GLN GLU GLN ILE HIS LYS LEU SEQRES 25 B 317 LEU LEU GLN PRO VAL FORMUL 3 HOH *161(H2 O) HELIX 1 1 ALA A 121 SER A 126 1 6 HELIX 2 2 GLN A 149 LEU A 154 1 6 HELIX 3 3 LYS A 157 SER A 163 1 7 HELIX 4 4 VAL A 164 LEU A 170 5 7 HELIX 5 5 ALA A 171 GLN A 173 5 3 HELIX 6 6 ASP A 174 THR A 182 1 9 HELIX 7 7 PRO A 264 LYS A 267 5 4 HELIX 8 8 ARG A 286 GLY A 292 1 7 HELIX 9 9 LEU A 294 ILE A 299 1 6 HELIX 10 10 SER A 302 LEU A 307 5 6 HELIX 11 11 PRO A 313 TYR A 325 1 13 HELIX 12 12 ASP A 393 LEU A 407 1 15 HELIX 13 13 PHE B 166 LEU B 170 5 5 HELIX 14 14 ALA B 171 GLN B 173 5 3 HELIX 15 15 ASP B 174 THR B 182 1 9 HELIX 16 16 PRO B 264 LYS B 267 5 4 HELIX 17 17 ALA B 287 GLY B 292 1 6 HELIX 18 18 LEU B 294 ILE B 299 1 6 HELIX 19 19 SER B 302 LEU B 307 1 6 HELIX 20 20 PRO B 313 TYR B 325 1 13 HELIX 21 21 ILE B 396 LEU B 407 1 12 SHEET 1 A 5 LEU A 143 ILE A 146 0 SHEET 2 A 5 THR A 131 SER A 137 -1 N VAL A 135 O VAL A 144 SHEET 3 A 5 PRO A 245 LYS A 253 -1 O VAL A 251 N PHE A 132 SHEET 4 A 5 SER A 224 HIS A 234 -1 N VAL A 233 O CYS A 246 SHEET 5 A 5 PHE A 208 ILE A 212 -1 N PHE A 208 O ILE A 228 SHEET 1 B 5 PHE A 280 VAL A 283 0 SHEET 2 B 5 ILE A 269 HIS A 274 -1 N THR A 273 O LEU A 281 SHEET 3 B 5 VAL A 363 VAL A 372 -1 O HIS A 370 N PHE A 270 SHEET 4 B 5 TYR A 345 VAL A 356 -1 N PHE A 355 O SER A 364 SHEET 5 B 5 PHE A 331 GLU A 332 -1 N PHE A 331 O TRP A 352 SHEET 1 C 5 PHE A 280 VAL A 283 0 SHEET 2 C 5 ILE A 269 HIS A 274 -1 N THR A 273 O LEU A 281 SHEET 3 C 5 VAL A 363 VAL A 372 -1 O HIS A 370 N PHE A 270 SHEET 4 C 5 TYR A 345 VAL A 356 -1 N PHE A 355 O SER A 364 SHEET 5 C 5 VAL A 336 CYS A 339 -1 N PHE A 338 O VAL A 346 SHEET 1 D 5 LEU B 143 ILE B 146 0 SHEET 2 D 5 THR B 131 PHE B 136 -1 N VAL B 135 O HIS B 145 SHEET 3 D 5 CYS B 247 LYS B 253 -1 O VAL B 251 N PHE B 132 SHEET 4 D 5 PRO B 225 LEU B 232 -1 N ARG B 227 O GLU B 252 SHEET 5 D 5 PHE B 208 ARG B 211 -1 N CYS B 210 O PHE B 226 SHEET 1 E 5 PHE B 280 VAL B 283 0 SHEET 2 E 5 ILE B 269 HIS B 274 -1 N THR B 273 O LEU B 281 SHEET 3 E 5 VAL B 363 VAL B 372 -1 O HIS B 370 N PHE B 270 SHEET 4 E 5 TYR B 345 VAL B 356 -1 N PHE B 355 O SER B 364 SHEET 5 E 5 VAL B 336 CYS B 339 -1 N PHE B 338 O VAL B 346 CRYST1 62.650 78.640 67.170 90.00 97.63 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015962 0.000000 0.002139 0.00000 SCALE2 0.000000 0.012716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015021 0.00000