data_4DJG # _entry.id 4DJG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4DJG RCSB RCSB070405 WWPDB D_1000070405 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4DIX _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4DJG _pdbx_database_status.status_code REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2012-02-01 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, W.' 1 'Ye, K.' 2 # _citation.id primary _citation.title 'Plant actin-binding protein SCAB1 is dimeric actin cross-linker with atypical pleckstrin homology domain' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 287 _citation.page_first 11981 _citation.page_last 11990 _citation.year 2012 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22356912 _citation.pdbx_database_id_DOI 10.1074/jbc.M111.338525 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zhang, W.' 1 primary 'Zhao, Y.' 2 primary 'Guo, Y.' 3 primary 'Ye, K.' 4 # _cell.length_a 48.185 _cell.length_b 48.185 _cell.length_c 77.919 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4DJG _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 4DJG _symmetry.Int_Tables_number 92 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Plectin-related protein' 5768.602 2 ? ? 'Coiled-coil 1 domain, UNP RESIDUES 100-151' ? 2 water nat water 18.015 56 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Putative uncharacterized protein At2g26770' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ATSLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE _entity_poly.pdbx_seq_one_letter_code_can ATSLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 THR n 1 3 SER n 1 4 LEU n 1 5 GLU n 1 6 LYS n 1 7 HIS n 1 8 VAL n 1 9 LEU n 1 10 LEU n 1 11 LYS n 1 12 LYS n 1 13 LEU n 1 14 ARG n 1 15 ASP n 1 16 ALA n 1 17 LEU n 1 18 GLU n 1 19 SER n 1 20 LEU n 1 21 ARG n 1 22 GLY n 1 23 ARG n 1 24 VAL n 1 25 ALA n 1 26 GLY n 1 27 ARG n 1 28 ASN n 1 29 LYS n 1 30 ASP n 1 31 ASP n 1 32 VAL n 1 33 GLU n 1 34 GLU n 1 35 ALA n 1 36 ILE n 1 37 ALA n 1 38 MET n 1 39 VAL n 1 40 GLU n 1 41 ALA n 1 42 LEU n 1 43 ALA n 1 44 VAL n 1 45 GLN n 1 46 LEU n 1 47 THR n 1 48 GLN n 1 49 ARG n 1 50 GLU n 1 51 GLY n 1 52 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'mouse-ear cress,thale-cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'At2g26770, AT2G26770' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O48791_ARATH _struct_ref.pdbx_db_accession O48791 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ATSLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE _struct_ref.pdbx_align_begin 100 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4DJG A 1 ? 52 ? O48791 100 ? 151 ? 100 151 2 1 4DJG B 1 ? 52 ? O48791 100 ? 151 ? 100 151 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4DJG _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 1.754 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 1.96 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 37.25 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.3 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '0.1M Bis-Tris PH5.3 22.5% PEG 3350, vapor diffusion, hanging drop, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2009-02-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 4DJG _reflns.d_resolution_high 1.900 _reflns.d_resolution_low 20.000 _reflns.number_obs 7516 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_netI_over_sigmaI 14.400 _reflns.pdbx_chi_squared 1.140 _reflns.pdbx_redundancy 8.700 _reflns.percent_possible_obs 97.400 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all 7516 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.900 1.930 ? ? ? ? 0.381 ? ? 0.945 8.400 ? ? ? 352 ? ? ? ? 96.200 ? ? 1 1 1.930 1.970 ? ? ? ? 0.324 ? ? 0.932 8.700 ? ? ? 351 ? ? ? ? 95.100 ? ? 2 1 1.970 2.010 ? ? ? ? 0.259 ? ? 0.928 8.400 ? ? ? 379 ? ? ? ? 95.200 ? ? 3 1 2.010 2.050 ? ? ? ? 0.245 ? ? 1.018 8.900 ? ? ? 338 ? ? ? ? 96.000 ? ? 4 1 2.050 2.090 ? ? ? ? 0.192 ? ? 1.177 8.700 ? ? ? 369 ? ? ? ? 96.100 ? ? 5 1 2.090 2.140 ? ? ? ? 0.153 ? ? 1.036 9.000 ? ? ? 364 ? ? ? ? 96.600 ? ? 6 1 2.140 2.190 ? ? ? ? 0.140 ? ? 1.195 8.800 ? ? ? 357 ? ? ? ? 96.000 ? ? 7 1 2.190 2.250 ? ? ? ? 0.122 ? ? 1.214 9.000 ? ? ? 363 ? ? ? ? 96.500 ? ? 8 1 2.250 2.320 ? ? ? ? 0.109 ? ? 1.283 8.900 ? ? ? 364 ? ? ? ? 97.100 ? ? 9 1 2.320 2.390 ? ? ? ? 0.099 ? ? 1.290 9.100 ? ? ? 366 ? ? ? ? 97.300 ? ? 10 1 2.390 2.480 ? ? ? ? 0.087 ? ? 1.212 9.000 ? ? ? 374 ? ? ? ? 97.700 ? ? 11 1 2.480 2.580 ? ? ? ? 0.080 ? ? 1.172 8.900 ? ? ? 371 ? ? ? ? 97.100 ? ? 12 1 2.580 2.690 ? ? ? ? 0.078 ? ? 1.263 8.900 ? ? ? 379 ? ? ? ? 97.400 ? ? 13 1 2.690 2.840 ? ? ? ? 0.071 ? ? 1.188 8.900 ? ? ? 385 ? ? ? ? 98.700 ? ? 14 1 2.840 3.010 ? ? ? ? 0.060 ? ? 1.279 8.900 ? ? ? 370 ? ? ? ? 97.900 ? ? 15 1 3.010 3.250 ? ? ? ? 0.054 ? ? 1.229 8.800 ? ? ? 386 ? ? ? ? 98.500 ? ? 16 1 3.250 3.570 ? ? ? ? 0.048 ? ? 1.235 8.700 ? ? ? 389 ? ? ? ? 99.000 ? ? 17 1 3.570 4.080 ? ? ? ? 0.043 ? ? 1.175 8.500 ? ? ? 394 ? ? ? ? 99.500 ? ? 18 1 4.080 5.130 ? ? ? ? 0.038 ? ? 1.018 8.300 ? ? ? 412 ? ? ? ? 99.000 ? ? 19 1 5.130 20.000 ? ? ? ? 0.031 ? ? 0.950 7.300 ? ? ? 453 ? ? ? ? 99.600 ? ? 20 1 # _refine.entry_id 4DJG _refine.ls_d_res_high 1.9000 _refine.ls_d_res_low 18.8600 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.6000 _refine.ls_number_reflns_obs 7172 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2066 _refine.ls_R_factor_R_work 0.2048 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2440 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.7000 _refine.ls_number_reflns_R_free 356 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 28.7268 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.0000 _refine.aniso_B[2][2] -0.0000 _refine.aniso_B[3][3] 0.0100 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9480 _refine.correlation_coeff_Fo_to_Fc_free 0.9300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.1790 _refine.pdbx_overall_ESU_R_Free 0.1590 _refine.overall_SU_ML 0.1010 _refine.overall_SU_B 3.3720 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 67.970 _refine.B_iso_min 10.800 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 744 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 56 _refine_hist.number_atoms_total 800 _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 18.8600 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 744 0.007 0.019 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 994 1.154 2.004 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 94 3.993 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 34 23.926 24.118 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 157 14.872 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 9 22.028 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 122 0.060 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 525 0.003 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.9000 _refine_ls_shell.d_res_low 1.9490 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 95.4700 _refine_ls_shell.number_reflns_R_work 440 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2420 _refine_ls_shell.R_factor_R_free 0.3140 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 24 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 464 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4DJG _struct.title 'Crystal structure of the coiled-coil 1 domain of actin-binding protein SCAB1' _struct.pdbx_descriptor 'Plectin-related protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DJG _struct_keywords.text 'Coiled-coil, four helix bundle, dimerization, cytosolic, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 7 ? GLY A 22 ? HIS A 106 GLY A 121 1 ? 16 HELX_P HELX_P2 2 ALA A 25 ? GLN A 48 ? ALA A 124 GLN A 147 1 ? 24 HELX_P HELX_P3 3 THR B 2 ? ARG B 21 ? THR B 101 ARG B 120 1 ? 20 HELX_P HELX_P4 4 ALA B 25 ? ARG B 27 ? ALA B 124 ARG B 126 5 ? 3 HELX_P HELX_P5 5 ASN B 28 ? LEU B 46 ? ASN B 127 LEU B 145 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 4DJG _atom_sites.fract_transf_matrix[1][1] 0.020753 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020753 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012834 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 100 ? ? ? A . n A 1 2 THR 2 101 ? ? ? A . n A 1 3 SER 3 102 ? ? ? A . n A 1 4 LEU 4 103 103 LEU LEU A . n A 1 5 GLU 5 104 104 GLU GLU A . n A 1 6 LYS 6 105 105 LYS LYS A . n A 1 7 HIS 7 106 106 HIS HIS A . n A 1 8 VAL 8 107 107 VAL VAL A . n A 1 9 LEU 9 108 108 LEU LEU A . n A 1 10 LEU 10 109 109 LEU LEU A . n A 1 11 LYS 11 110 110 LYS LYS A . n A 1 12 LYS 12 111 111 LYS LYS A . n A 1 13 LEU 13 112 112 LEU LEU A . n A 1 14 ARG 14 113 113 ARG ARG A . n A 1 15 ASP 15 114 114 ASP ASP A . n A 1 16 ALA 16 115 115 ALA ALA A . n A 1 17 LEU 17 116 116 LEU LEU A . n A 1 18 GLU 18 117 117 GLU GLU A . n A 1 19 SER 19 118 118 SER SER A . n A 1 20 LEU 20 119 119 LEU LEU A . n A 1 21 ARG 21 120 120 ARG ARG A . n A 1 22 GLY 22 121 121 GLY GLY A . n A 1 23 ARG 23 122 122 ARG ARG A . n A 1 24 VAL 24 123 123 VAL VAL A . n A 1 25 ALA 25 124 124 ALA ALA A . n A 1 26 GLY 26 125 125 GLY GLY A . n A 1 27 ARG 27 126 126 ARG ARG A . n A 1 28 ASN 28 127 127 ASN ASN A . n A 1 29 LYS 29 128 128 LYS LYS A . n A 1 30 ASP 30 129 129 ASP ASP A . n A 1 31 ASP 31 130 130 ASP ASP A . n A 1 32 VAL 32 131 131 VAL VAL A . n A 1 33 GLU 33 132 132 GLU GLU A . n A 1 34 GLU 34 133 133 GLU GLU A . n A 1 35 ALA 35 134 134 ALA ALA A . n A 1 36 ILE 36 135 135 ILE ILE A . n A 1 37 ALA 37 136 136 ALA ALA A . n A 1 38 MET 38 137 137 MET MET A . n A 1 39 VAL 39 138 138 VAL VAL A . n A 1 40 GLU 40 139 139 GLU GLU A . n A 1 41 ALA 41 140 140 ALA ALA A . n A 1 42 LEU 42 141 141 LEU LEU A . n A 1 43 ALA 43 142 142 ALA ALA A . n A 1 44 VAL 44 143 143 VAL VAL A . n A 1 45 GLN 45 144 144 GLN GLN A . n A 1 46 LEU 46 145 145 LEU LEU A . n A 1 47 THR 47 146 146 THR THR A . n A 1 48 GLN 48 147 147 GLN GLN A . n A 1 49 ARG 49 148 148 ARG ARG A . n A 1 50 GLU 50 149 149 GLU GLU A . n A 1 51 GLY 51 150 150 GLY GLY A . n A 1 52 GLU 52 151 151 GLU GLU A . n B 1 1 ALA 1 100 100 ALA ALA B . n B 1 2 THR 2 101 101 THR THR B . n B 1 3 SER 3 102 102 SER SER B . n B 1 4 LEU 4 103 103 LEU LEU B . n B 1 5 GLU 5 104 104 GLU GLU B . n B 1 6 LYS 6 105 105 LYS LYS B . n B 1 7 HIS 7 106 106 HIS HIS B . n B 1 8 VAL 8 107 107 VAL VAL B . n B 1 9 LEU 9 108 108 LEU LEU B . n B 1 10 LEU 10 109 109 LEU LEU B . n B 1 11 LYS 11 110 110 LYS LYS B . n B 1 12 LYS 12 111 111 LYS LYS B . n B 1 13 LEU 13 112 112 LEU LEU B . n B 1 14 ARG 14 113 113 ARG ARG B . n B 1 15 ASP 15 114 114 ASP ASP B . n B 1 16 ALA 16 115 115 ALA ALA B . n B 1 17 LEU 17 116 116 LEU LEU B . n B 1 18 GLU 18 117 117 GLU GLU B . n B 1 19 SER 19 118 118 SER SER B . n B 1 20 LEU 20 119 119 LEU LEU B . n B 1 21 ARG 21 120 120 ARG ARG B . n B 1 22 GLY 22 121 121 GLY GLY B . n B 1 23 ARG 23 122 122 ARG ARG B . n B 1 24 VAL 24 123 123 VAL VAL B . n B 1 25 ALA 25 124 124 ALA ALA B . n B 1 26 GLY 26 125 125 GLY GLY B . n B 1 27 ARG 27 126 126 ARG ARG B . n B 1 28 ASN 28 127 127 ASN ASN B . n B 1 29 LYS 29 128 128 LYS LYS B . n B 1 30 ASP 30 129 129 ASP ASP B . n B 1 31 ASP 31 130 130 ASP ASP B . n B 1 32 VAL 32 131 131 VAL VAL B . n B 1 33 GLU 33 132 132 GLU GLU B . n B 1 34 GLU 34 133 133 GLU GLU B . n B 1 35 ALA 35 134 134 ALA ALA B . n B 1 36 ILE 36 135 135 ILE ILE B . n B 1 37 ALA 37 136 136 ALA ALA B . n B 1 38 MET 38 137 137 MET MET B . n B 1 39 VAL 39 138 138 VAL VAL B . n B 1 40 GLU 40 139 139 GLU GLU B . n B 1 41 ALA 41 140 140 ALA ALA B . n B 1 42 LEU 42 141 141 LEU LEU B . n B 1 43 ALA 43 142 142 ALA ALA B . n B 1 44 VAL 44 143 143 VAL VAL B . n B 1 45 GLN 45 144 144 GLN GLN B . n B 1 46 LEU 46 145 145 LEU LEU B . n B 1 47 THR 47 146 146 THR THR B . n B 1 48 GLN 48 147 ? ? ? B . n B 1 49 ARG 49 148 ? ? ? B . n B 1 50 GLU 50 149 ? ? ? B . n B 1 51 GLY 51 150 ? ? ? B . n B 1 52 GLU 52 151 ? ? ? B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1730 ? 1 MORE -17 ? 1 'SSA (A^2)' 6160 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-02-29 2 'Structure model' 1 1 2013-07-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 REFMAC 5.6.0117 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 CrystalClear . ? ? ? ? 'data collection' ? ? ? 5 DENZO . ? ? ? ? 'data reduction' ? ? ? 6 SHARP . ? ? ? ? phasing ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 100 ? A ALA 1 2 1 Y 1 A THR 101 ? A THR 2 3 1 Y 1 A SER 102 ? A SER 3 4 1 Y 1 B GLN 147 ? B GLN 48 5 1 Y 1 B ARG 148 ? B ARG 49 6 1 Y 1 B GLU 149 ? B GLU 50 7 1 Y 1 B GLY 150 ? B GLY 51 8 1 Y 1 B GLU 151 ? B GLU 52 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 201 1 HOH HOH A . C 2 HOH 2 202 2 HOH HOH A . C 2 HOH 3 203 4 HOH HOH A . C 2 HOH 4 204 7 HOH HOH A . C 2 HOH 5 205 8 HOH HOH A . C 2 HOH 6 206 9 HOH HOH A . C 2 HOH 7 207 10 HOH HOH A . C 2 HOH 8 208 12 HOH HOH A . C 2 HOH 9 209 13 HOH HOH A . C 2 HOH 10 210 14 HOH HOH A . C 2 HOH 11 211 17 HOH HOH A . C 2 HOH 12 212 19 HOH HOH A . C 2 HOH 13 213 23 HOH HOH A . C 2 HOH 14 214 24 HOH HOH A . C 2 HOH 15 215 25 HOH HOH A . C 2 HOH 16 216 26 HOH HOH A . C 2 HOH 17 217 28 HOH HOH A . C 2 HOH 18 218 31 HOH HOH A . C 2 HOH 19 219 34 HOH HOH A . C 2 HOH 20 220 39 HOH HOH A . C 2 HOH 21 221 40 HOH HOH A . C 2 HOH 22 222 41 HOH HOH A . C 2 HOH 23 223 42 HOH HOH A . C 2 HOH 24 224 47 HOH HOH A . C 2 HOH 25 225 48 HOH HOH A . C 2 HOH 26 226 49 HOH HOH A . C 2 HOH 27 227 52 HOH HOH A . C 2 HOH 28 228 54 HOH HOH A . C 2 HOH 29 229 56 HOH HOH A . D 2 HOH 1 201 3 HOH HOH B . D 2 HOH 2 202 5 HOH HOH B . D 2 HOH 3 203 6 HOH HOH B . D 2 HOH 4 204 11 HOH HOH B . D 2 HOH 5 205 15 HOH HOH B . D 2 HOH 6 206 16 HOH HOH B . D 2 HOH 7 207 18 HOH HOH B . D 2 HOH 8 208 20 HOH HOH B . D 2 HOH 9 209 21 HOH HOH B . D 2 HOH 10 210 22 HOH HOH B . D 2 HOH 11 211 27 HOH HOH B . D 2 HOH 12 212 29 HOH HOH B . D 2 HOH 13 213 30 HOH HOH B . D 2 HOH 14 214 32 HOH HOH B . D 2 HOH 15 215 33 HOH HOH B . D 2 HOH 16 216 35 HOH HOH B . D 2 HOH 17 217 36 HOH HOH B . D 2 HOH 18 218 37 HOH HOH B . D 2 HOH 19 219 38 HOH HOH B . D 2 HOH 20 220 43 HOH HOH B . D 2 HOH 21 221 44 HOH HOH B . D 2 HOH 22 222 45 HOH HOH B . D 2 HOH 23 223 46 HOH HOH B . D 2 HOH 24 224 50 HOH HOH B . D 2 HOH 25 225 51 HOH HOH B . D 2 HOH 26 226 53 HOH HOH B . D 2 HOH 27 227 55 HOH HOH B . #