HEADER TRANSPORT PROTEIN 02-FEB-12 4DJI TITLE STRUCTURE OF GLUTAMATE-GABA ANTIPORTER GADC COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE GLUTAMATE/GAMMA-AMINOBUTYRATE ANTIPORTER; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GADC, EXTREME ACID SENSITIVITY PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: GADC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LEUT FOLD, GLUTAMATE-GABA ANTIPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.MA,P.L.LU,C.Y.YAN,C.FAN,P.YIN,J.W.WANG,Y.G.SHI REVDAT 3 20-MAR-24 4DJI 1 REMARK REVDAT 2 04-APR-12 4DJI 1 JRNL REVDAT 1 14-MAR-12 4DJI 0 JRNL AUTH D.MA,P.L.LU,C.Y.YAN,C.FAN,P.YIN,J.W.WANG,Y.G.SHI JRNL TITL STRUCTURE AND MECHANISM OF A GLUTAMATE-GABA ANTIPORTER JRNL REF NATURE V. 483 632 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 22407317 JRNL DOI 10.1038/NATURE10917 REMARK 2 REMARK 2 RESOLUTION. 3.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.2 REMARK 3 NUMBER OF REFLECTIONS : 22355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.311 REMARK 3 R VALUE (WORKING SET) : 0.310 REMARK 3 FREE R VALUE : 0.328 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.5199 - 6.3635 0.97 3226 188 0.2646 0.2576 REMARK 3 2 6.3635 - 5.0555 1.00 3145 190 0.3377 0.4031 REMARK 3 3 5.0555 - 4.4178 1.00 3158 164 0.2661 0.3048 REMARK 3 4 4.4178 - 4.0145 1.00 3141 158 0.3124 0.3262 REMARK 3 5 4.0145 - 3.7271 0.99 3096 160 0.3644 0.3709 REMARK 3 6 3.7271 - 3.5076 0.82 2549 129 0.3812 0.3950 REMARK 3 7 3.5076 - 3.3320 0.60 1858 107 0.3755 0.3921 REMARK 3 8 3.3320 - 3.1871 0.34 1036 50 0.4075 0.4199 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.38 REMARK 3 K_SOL : 0.28 REMARK 3 B_SOL : 59.77 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.990 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 89.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 108.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -19.81080 REMARK 3 B22 (A**2) : -3.93880 REMARK 3 B33 (A**2) : -4.84070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 7527 REMARK 3 ANGLE : 1.640 10276 REMARK 3 CHIRALITY : 0.102 1257 REMARK 3 PLANARITY : 0.018 1245 REMARK 3 DIHEDRAL : 23.627 2563 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -29.5593 -4.2023 22.0175 REMARK 3 T TENSOR REMARK 3 T11: 0.3221 T22: -0.0452 REMARK 3 T33: 0.2995 T12: 0.1093 REMARK 3 T13: -0.0556 T23: 0.0661 REMARK 3 L TENSOR REMARK 3 L11: 1.2984 L22: 1.6562 REMARK 3 L33: 7.6525 L12: 0.2871 REMARK 3 L13: -0.0397 L23: 0.4330 REMARK 3 S TENSOR REMARK 3 S11: -0.0635 S12: 0.1598 S13: -0.0147 REMARK 3 S21: -0.2188 S22: 0.0484 S23: 0.1916 REMARK 3 S31: -0.8863 S32: -0.2640 S33: -0.0126 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DJI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070407. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22522 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.187 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 47.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG400, 100MM TRIS-HCL, 200MM REMARK 280 NACL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.80900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.30850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.70750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.30850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.80900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.70750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 VAL A 5 REMARK 465 GLN A 6 REMARK 465 THR A 7 REMARK 465 GLY A 8 REMARK 465 LYS A 9 REMARK 465 PRO A 184 REMARK 465 VAL A 185 REMARK 465 ALA A 186 REMARK 465 ARG A 469 REMARK 465 LYS A 470 REMARK 465 GLY A 471 REMARK 465 LYS A 472 REMARK 465 LYS A 510 REMARK 465 HIS A 511 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 VAL B 5 REMARK 465 GLN B 6 REMARK 465 THR B 7 REMARK 465 GLY B 8 REMARK 465 LYS B 9 REMARK 465 ALA B 10 REMARK 465 LYS B 11 REMARK 465 PRO B 184 REMARK 465 VAL B 185 REMARK 465 ASP B 398 REMARK 465 LEU B 399 REMARK 465 LYS B 400 REMARK 465 ARG B 401 REMARK 465 ASP B 468 REMARK 465 ARG B 469 REMARK 465 LYS B 470 REMARK 465 GLY B 471 REMARK 465 LYS B 472 REMARK 465 ALA B 473 REMARK 465 ASN B 474 REMARK 465 VAL B 505 REMARK 465 MET B 506 REMARK 465 ASN B 507 REMARK 465 ASP B 508 REMARK 465 LYS B 509 REMARK 465 LYS B 510 REMARK 465 HIS B 511 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 187 CG1 CG2 CD1 REMARK 470 GLU A 188 CG CD OE1 OE2 REMARK 470 LEU A 325 CG CD1 CD2 REMARK 470 ASN A 335 CG OD1 ND2 REMARK 470 ASP A 468 CG OD1 OD2 REMARK 470 ASN A 474 CG OD1 ND2 REMARK 470 ASP B 190 CG OD1 OD2 REMARK 470 ARG B 314 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 335 CG OD1 ND2 REMARK 470 HIS B 467 CG ND1 CD2 CE1 NE2 REMARK 470 THR B 475 OG1 CG2 REMARK 470 PHE B 492 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 503 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE B 504 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 117 NH2 ARG A 291 1.92 REMARK 500 O ASN A 483 N GLN A 485 1.95 REMARK 500 CA GLY A 202 CG PRO A 434 1.96 REMARK 500 O ASP A 197 OG1 THR A 203 2.06 REMARK 500 O ILE A 246 OG SER A 250 2.06 REMARK 500 O SER B 313 N MET B 316 2.07 REMARK 500 NH2 ARG A 154 CE LYS A 489 2.07 REMARK 500 OG1 THR B 37 NE2 GLN B 438 2.08 REMARK 500 CH2 TRP B 53 CE1 TYR B 382 2.10 REMARK 500 O LEU A 204 N VAL A 206 2.11 REMARK 500 O PRO A 85 N TRP A 87 2.11 REMARK 500 OG1 THR A 22 OG SER A 220 2.12 REMARK 500 O LEU B 42 N LEU B 46 2.12 REMARK 500 O PHE B 45 N LEU B 47 2.14 REMARK 500 CD2 LEU A 135 OG SER A 350 2.14 REMARK 500 OG1 THR A 478 CG2 VAL A 505 2.15 REMARK 500 O ALA A 221 N VAL A 224 2.16 REMARK 500 O ASP B 197 N SER B 199 2.16 REMARK 500 O ALA B 36 N GLY B 39 2.16 REMARK 500 O GLU B 447 CG2 VAL B 451 2.16 REMARK 500 OE1 GLU B 63 OH TYR B 389 2.16 REMARK 500 O THR B 152 N ILE B 155 2.17 REMARK 500 O TRP B 70 N GLU B 72 2.18 REMARK 500 O THR B 129 N THR B 131 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 121 C - N - CD ANGL. DEV. = -13.1 DEGREES REMARK 500 PRO A 127 C - N - CD ANGL. DEV. = -15.8 DEGREES REMARK 500 PRO A 167 C - N - CD ANGL. DEV. = -12.9 DEGREES REMARK 500 TYR A 234 CB - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 TYR A 234 N - CA - C ANGL. DEV. = 21.5 DEGREES REMARK 500 PRO A 284 C - N - CD ANGL. DEV. = -16.7 DEGREES REMARK 500 PRO A 338 C - N - CD ANGL. DEV. = -13.5 DEGREES REMARK 500 PRO A 434 C - N - CD ANGL. DEV. = -17.8 DEGREES REMARK 500 ILE A 482 CB - CA - C ANGL. DEV. = -15.5 DEGREES REMARK 500 PRO A 501 C - N - CD ANGL. DEV. = -17.3 DEGREES REMARK 500 SER B 41 CB - CA - C ANGL. DEV. = 15.6 DEGREES REMARK 500 LEU B 42 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 MET B 215 CG - SD - CE ANGL. DEV. = 13.4 DEGREES REMARK 500 PRO B 338 C - N - CD ANGL. DEV. = -13.6 DEGREES REMARK 500 PRO B 397 C - N - CD ANGL. DEV. = -12.6 DEGREES REMARK 500 PRO B 433 C - N - CD ANGL. DEV. = -15.4 DEGREES REMARK 500 PRO B 481 C - N - CD ANGL. DEV. = -16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 38 36.52 -76.57 REMARK 500 TRP A 53 -85.11 -109.08 REMARK 500 PHE A 54 -77.92 -22.05 REMARK 500 ILE A 55 -80.89 -37.39 REMARK 500 VAL A 75 2.48 87.65 REMARK 500 PRO A 85 -87.53 -57.88 REMARK 500 ARG A 86 -47.50 -11.34 REMARK 500 PRO A 121 35.56 -76.72 REMARK 500 LEU A 143 -76.55 -43.64 REMARK 500 THR A 149 32.63 -87.21 REMARK 500 THR A 152 -96.64 -5.63 REMARK 500 ALA A 153 -59.46 -17.33 REMARK 500 ARG A 154 -77.24 -52.72 REMARK 500 MET A 189 105.33 62.75 REMARK 500 LYS A 192 41.10 -149.15 REMARK 500 VAL A 205 -15.16 -41.28 REMARK 500 GLU A 218 -14.09 -45.53 REMARK 500 ALA A 221 -60.68 -104.00 REMARK 500 HIS A 223 -8.19 -48.82 REMARK 500 ASN A 225 -75.73 -32.20 REMARK 500 GLU A 226 -19.85 -39.00 REMARK 500 ASN A 229 76.18 -158.87 REMARK 500 ASP A 233 -46.23 -27.78 REMARK 500 SER A 280 12.36 -54.34 REMARK 500 ALA A 283 86.68 146.00 REMARK 500 PRO A 284 -31.31 -29.18 REMARK 500 VAL A 310 -65.12 -120.88 REMARK 500 ASN A 323 -29.60 76.22 REMARK 500 PRO A 326 153.22 -36.56 REMARK 500 LYS A 331 133.77 -170.38 REMARK 500 LYS A 334 103.20 -21.56 REMARK 500 ASN A 335 27.04 110.61 REMARK 500 ILE A 355 -67.00 -94.93 REMARK 500 LEU A 356 -79.73 -48.55 REMARK 500 THR A 357 -78.35 -42.28 REMARK 500 ASN A 358 69.19 -63.31 REMARK 500 THR A 359 -74.90 -168.73 REMARK 500 VAL A 393 -60.82 -25.13 REMARK 500 LYS A 409 -32.87 -32.99 REMARK 500 VAL A 411 -39.30 -39.69 REMARK 500 SER A 423 -75.37 -53.33 REMARK 500 VAL A 429 -25.93 -36.24 REMARK 500 ASP A 435 -10.06 87.57 REMARK 500 GLN A 438 85.08 52.81 REMARK 500 ASP A 440 133.76 -28.26 REMARK 500 GLU A 447 -71.78 -76.97 REMARK 500 LEU A 457 -20.23 -37.32 REMARK 500 LEU A 459 -74.45 -52.11 REMARK 500 TYR A 464 -72.91 -57.94 REMARK 500 VAL A 466 -61.62 -10.52 REMARK 500 REMARK 500 THIS ENTRY HAS 127 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 75 PHE A 76 146.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 170 -10.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DJK RELATED DB: PDB DBREF 4DJI A 1 511 UNP P63235 GADC_ECOLI 1 511 DBREF 4DJI B 1 511 UNP P63235 GADC_ECOLI 1 511 SEQRES 1 A 511 MET ALA THR SER VAL GLN THR GLY LYS ALA LYS GLN LEU SEQRES 2 A 511 THR LEU LEU GLY PHE PHE ALA ILE THR ALA SER MET VAL SEQRES 3 A 511 MET ALA VAL TYR GLU TYR PRO THR PHE ALA THR SER GLY SEQRES 4 A 511 PHE SER LEU VAL PHE PHE LEU LEU LEU GLY GLY ILE LEU SEQRES 5 A 511 TRP PHE ILE PRO VAL GLY LEU CYS ALA ALA GLU MET ALA SEQRES 6 A 511 THR VAL ASP GLY TRP GLU GLU GLY GLY VAL PHE ALA TRP SEQRES 7 A 511 VAL SER ASN THR LEU GLY PRO ARG TRP GLY PHE ALA ALA SEQRES 8 A 511 ILE SER PHE GLY TYR LEU GLN ILE ALA ILE GLY PHE ILE SEQRES 9 A 511 PRO MET LEU TYR PHE VAL LEU GLY ALA LEU SER TYR ILE SEQRES 10 A 511 LEU LYS TRP PRO ALA LEU ASN GLU ASP PRO ILE THR LYS SEQRES 11 A 511 THR ILE ALA ALA LEU ILE ILE LEU TRP ALA LEU ALA LEU SEQRES 12 A 511 THR GLN PHE GLY GLY THR LYS TYR THR ALA ARG ILE ALA SEQRES 13 A 511 LYS VAL GLY PHE PHE ALA GLY ILE LEU LEU PRO ALA PHE SEQRES 14 A 511 ILE LEU ILE ALA LEU ALA ALA ILE TYR LEU HIS SER GLY SEQRES 15 A 511 ALA PRO VAL ALA ILE GLU MET ASP SER LYS THR PHE PHE SEQRES 16 A 511 PRO ASP PHE SER LYS VAL GLY THR LEU VAL VAL PHE VAL SEQRES 17 A 511 ALA PHE ILE LEU SER TYR MET GLY VAL GLU ALA SER ALA SEQRES 18 A 511 THR HIS VAL ASN GLU MET SER ASN PRO GLY ARG ASP TYR SEQRES 19 A 511 PRO LEU ALA MET LEU LEU LEU MET VAL ALA ALA ILE CYS SEQRES 20 A 511 LEU SER SER VAL GLY GLY LEU SER ILE ALA MET VAL ILE SEQRES 21 A 511 PRO GLY ASN GLU ILE ASN LEU SER ALA GLY VAL MET GLN SEQRES 22 A 511 THR PHE THR VAL LEU MET SER HIS VAL ALA PRO GLU ILE SEQRES 23 A 511 GLU TRP THR VAL ARG VAL ILE SER ALA LEU LEU LEU LEU SEQRES 24 A 511 GLY VAL LEU ALA GLU ILE ALA SER TRP ILE VAL GLY PRO SEQRES 25 A 511 SER ARG GLY MET TYR VAL THR ALA GLN LYS ASN LEU LEU SEQRES 26 A 511 PRO ALA ALA PHE ALA LYS MET ASN LYS ASN GLY VAL PRO SEQRES 27 A 511 VAL THR LEU VAL ILE SER GLN LEU VAL ILE THR SER ILE SEQRES 28 A 511 ALA LEU ILE ILE LEU THR ASN THR GLY GLY GLY ASN ASN SEQRES 29 A 511 MET SER PHE LEU ILE ALA LEU ALA LEU THR VAL VAL ILE SEQRES 30 A 511 TYR LEU CYS ALA TYR PHE MET LEU PHE ILE GLY TYR ILE SEQRES 31 A 511 VAL LEU VAL LEU LYS HIS PRO ASP LEU LYS ARG THR PHE SEQRES 32 A 511 ASN ILE PRO GLY GLY LYS GLY VAL LYS LEU VAL VAL ALA SEQRES 33 A 511 ILE VAL GLY LEU LEU THR SER ILE MET ALA PHE ILE VAL SEQRES 34 A 511 SER PHE LEU PRO PRO ASP ASN ILE GLN GLY ASP SER THR SEQRES 35 A 511 ASP MET TYR VAL GLU LEU LEU VAL VAL SER PHE LEU VAL SEQRES 36 A 511 VAL LEU ALA LEU PRO PHE ILE LEU TYR ALA VAL HIS ASP SEQRES 37 A 511 ARG LYS GLY LYS ALA ASN THR GLY VAL THR LEU GLU PRO SEQRES 38 A 511 ILE ASN SER GLN ASN ALA PRO LYS GLY HIS PHE PHE LEU SEQRES 39 A 511 HIS PRO ARG ALA ARG SER PRO HIS TYR ILE VAL MET ASN SEQRES 40 A 511 ASP LYS LYS HIS SEQRES 1 B 511 MET ALA THR SER VAL GLN THR GLY LYS ALA LYS GLN LEU SEQRES 2 B 511 THR LEU LEU GLY PHE PHE ALA ILE THR ALA SER MET VAL SEQRES 3 B 511 MET ALA VAL TYR GLU TYR PRO THR PHE ALA THR SER GLY SEQRES 4 B 511 PHE SER LEU VAL PHE PHE LEU LEU LEU GLY GLY ILE LEU SEQRES 5 B 511 TRP PHE ILE PRO VAL GLY LEU CYS ALA ALA GLU MET ALA SEQRES 6 B 511 THR VAL ASP GLY TRP GLU GLU GLY GLY VAL PHE ALA TRP SEQRES 7 B 511 VAL SER ASN THR LEU GLY PRO ARG TRP GLY PHE ALA ALA SEQRES 8 B 511 ILE SER PHE GLY TYR LEU GLN ILE ALA ILE GLY PHE ILE SEQRES 9 B 511 PRO MET LEU TYR PHE VAL LEU GLY ALA LEU SER TYR ILE SEQRES 10 B 511 LEU LYS TRP PRO ALA LEU ASN GLU ASP PRO ILE THR LYS SEQRES 11 B 511 THR ILE ALA ALA LEU ILE ILE LEU TRP ALA LEU ALA LEU SEQRES 12 B 511 THR GLN PHE GLY GLY THR LYS TYR THR ALA ARG ILE ALA SEQRES 13 B 511 LYS VAL GLY PHE PHE ALA GLY ILE LEU LEU PRO ALA PHE SEQRES 14 B 511 ILE LEU ILE ALA LEU ALA ALA ILE TYR LEU HIS SER GLY SEQRES 15 B 511 ALA PRO VAL ALA ILE GLU MET ASP SER LYS THR PHE PHE SEQRES 16 B 511 PRO ASP PHE SER LYS VAL GLY THR LEU VAL VAL PHE VAL SEQRES 17 B 511 ALA PHE ILE LEU SER TYR MET GLY VAL GLU ALA SER ALA SEQRES 18 B 511 THR HIS VAL ASN GLU MET SER ASN PRO GLY ARG ASP TYR SEQRES 19 B 511 PRO LEU ALA MET LEU LEU LEU MET VAL ALA ALA ILE CYS SEQRES 20 B 511 LEU SER SER VAL GLY GLY LEU SER ILE ALA MET VAL ILE SEQRES 21 B 511 PRO GLY ASN GLU ILE ASN LEU SER ALA GLY VAL MET GLN SEQRES 22 B 511 THR PHE THR VAL LEU MET SER HIS VAL ALA PRO GLU ILE SEQRES 23 B 511 GLU TRP THR VAL ARG VAL ILE SER ALA LEU LEU LEU LEU SEQRES 24 B 511 GLY VAL LEU ALA GLU ILE ALA SER TRP ILE VAL GLY PRO SEQRES 25 B 511 SER ARG GLY MET TYR VAL THR ALA GLN LYS ASN LEU LEU SEQRES 26 B 511 PRO ALA ALA PHE ALA LYS MET ASN LYS ASN GLY VAL PRO SEQRES 27 B 511 VAL THR LEU VAL ILE SER GLN LEU VAL ILE THR SER ILE SEQRES 28 B 511 ALA LEU ILE ILE LEU THR ASN THR GLY GLY GLY ASN ASN SEQRES 29 B 511 MET SER PHE LEU ILE ALA LEU ALA LEU THR VAL VAL ILE SEQRES 30 B 511 TYR LEU CYS ALA TYR PHE MET LEU PHE ILE GLY TYR ILE SEQRES 31 B 511 VAL LEU VAL LEU LYS HIS PRO ASP LEU LYS ARG THR PHE SEQRES 32 B 511 ASN ILE PRO GLY GLY LYS GLY VAL LYS LEU VAL VAL ALA SEQRES 33 B 511 ILE VAL GLY LEU LEU THR SER ILE MET ALA PHE ILE VAL SEQRES 34 B 511 SER PHE LEU PRO PRO ASP ASN ILE GLN GLY ASP SER THR SEQRES 35 B 511 ASP MET TYR VAL GLU LEU LEU VAL VAL SER PHE LEU VAL SEQRES 36 B 511 VAL LEU ALA LEU PRO PHE ILE LEU TYR ALA VAL HIS ASP SEQRES 37 B 511 ARG LYS GLY LYS ALA ASN THR GLY VAL THR LEU GLU PRO SEQRES 38 B 511 ILE ASN SER GLN ASN ALA PRO LYS GLY HIS PHE PHE LEU SEQRES 39 B 511 HIS PRO ARG ALA ARG SER PRO HIS TYR ILE VAL MET ASN SEQRES 40 B 511 ASP LYS LYS HIS HELIX 1 1 THR A 14 ALA A 23 1 10 HELIX 2 2 SER A 24 VAL A 26 5 3 HELIX 3 3 TYR A 32 ALA A 36 5 5 HELIX 4 4 SER A 38 PHE A 40 5 3 HELIX 5 5 SER A 41 TRP A 53 1 13 HELIX 6 6 TRP A 53 THR A 66 1 14 HELIX 7 7 PHE A 76 LEU A 83 1 8 HELIX 8 8 GLY A 84 SER A 93 1 10 HELIX 9 9 TYR A 96 LEU A 118 1 23 HELIX 10 10 ASP A 126 GLY A 147 1 22 HELIX 11 11 TYR A 151 GLY A 163 1 13 HELIX 12 12 ILE A 164 SER A 181 1 18 HELIX 13 13 THR A 203 VAL A 205 5 3 HELIX 14 14 VAL A 206 MET A 215 1 10 HELIX 15 15 ALA A 221 ASN A 225 5 5 HELIX 16 16 ASN A 229 ILE A 260 1 32 HELIX 17 17 PRO A 261 ILE A 265 5 5 HELIX 18 18 ALA A 269 ALA A 283 1 15 HELIX 19 19 PRO A 284 GLU A 287 5 4 HELIX 20 20 TRP A 288 ILE A 309 1 22 HELIX 21 21 VAL A 310 MET A 316 1 7 HELIX 22 22 TYR A 317 LYS A 322 1 6 HELIX 23 23 PRO A 338 ILE A 354 1 17 HELIX 24 24 ASN A 363 HIS A 396 1 34 HELIX 25 25 GLY A 408 SER A 430 1 23 HELIX 26 26 MET A 444 VAL A 455 1 12 HELIX 27 27 ALA A 458 HIS A 467 1 10 HELIX 28 28 THR B 14 THR B 22 1 9 HELIX 29 29 ALA B 28 TYR B 30 5 3 HELIX 30 30 GLU B 31 THR B 37 1 7 HELIX 31 31 PHE B 40 LEU B 52 1 13 HELIX 32 32 TRP B 53 THR B 66 1 14 HELIX 33 33 GLY B 74 LEU B 83 1 10 HELIX 34 34 GLY B 84 PHE B 103 1 20 HELIX 35 35 PHE B 103 LEU B 118 1 16 HELIX 36 36 PRO B 121 ASP B 126 1 6 HELIX 37 37 ASP B 126 GLY B 147 1 22 HELIX 38 38 THR B 152 ILE B 164 1 13 HELIX 39 39 LEU B 165 TYR B 178 1 14 HELIX 40 40 VAL B 206 MET B 215 1 10 HELIX 41 41 GLU B 218 MET B 227 5 10 HELIX 42 42 ASP B 233 MET B 258 1 26 HELIX 43 43 ALA B 269 ALA B 283 1 15 HELIX 44 44 PRO B 284 GLU B 287 5 4 HELIX 45 45 TRP B 288 ILE B 309 1 22 HELIX 46 46 GLY B 311 MET B 316 1 6 HELIX 47 47 TYR B 317 LYS B 322 1 6 HELIX 48 48 PRO B 338 THR B 359 1 22 HELIX 49 49 ASN B 364 HIS B 396 1 33 HELIX 50 50 GLY B 408 SER B 430 1 23 HELIX 51 51 MET B 444 HIS B 467 1 24 SHEET 1 A 2 THR A 478 GLU A 480 0 SHEET 2 A 2 TYR A 503 VAL A 505 -1 O VAL A 505 N THR A 478 SHEET 1 B 2 GLU B 480 PRO B 481 0 SHEET 2 B 2 HIS B 502 TYR B 503 -1 O TYR B 503 N GLU B 480 CISPEP 1 GLU B 72 GLY B 73 0 1.44 CISPEP 2 GLY B 73 GLY B 74 0 -1.18 CRYST1 77.618 105.415 188.617 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012884 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005302 0.00000