HEADER TRANSPORT PROTEIN 02-FEB-12 4DJK TITLE STRUCTURE OF GLUTAMATE-GABA ANTIPORTER GADC COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE GLUTAMATE/GAMMA-AMINOBUTYRATE ANTIPORTER; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GADC, EXTREME ACID SENSITIVITY PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: GADC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LEUT, GLUTAMATE-GABA ANTIPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.MA,P.L.LU,C.Y.YAN,C.FAN,P.YIN,J.W.WANG,Y.G.SHI REVDAT 3 20-MAR-24 4DJK 1 REMARK REVDAT 2 04-APR-12 4DJK 1 JRNL REVDAT 1 14-MAR-12 4DJK 0 JRNL AUTH D.MA,P.L.LU,C.Y.YAN,C.FAN,P.YIN,J.W.WANG,Y.G.SHI JRNL TITL STRUCTURE AND MECHANISM OF A GLUTAMATE-GABA ANTIPORTER JRNL REF NATURE V. 483 632 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 22407317 JRNL DOI 10.1038/NATURE10917 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.7 REMARK 3 NUMBER OF REFLECTIONS : 21276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.285 REMARK 3 R VALUE (WORKING SET) : 0.283 REMARK 3 FREE R VALUE : 0.325 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.370 REMARK 3 FREE R VALUE TEST SET COUNT : 1143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.1423 - 6.1824 0.98 3331 133 0.2639 0.2277 REMARK 3 2 6.1824 - 4.9123 1.00 3161 212 0.3110 0.4397 REMARK 3 3 4.9123 - 4.2928 0.99 3051 269 0.2221 0.3057 REMARK 3 4 4.2928 - 3.9010 1.00 3307 0 0.2842 0.0000 REMARK 3 5 3.9010 - 3.6218 0.95 2830 319 0.3394 0.4470 REMARK 3 6 3.6218 - 3.4085 0.74 2431 0 0.3581 0.0000 REMARK 3 7 3.4085 - 3.2379 0.46 1341 176 0.3705 0.4381 REMARK 3 8 3.2379 - 3.0971 0.22 681 34 0.4199 0.7745 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.38 REMARK 3 K_SOL : 0.25 REMARK 3 B_SOL : 91.19 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.930 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 42.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 102.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 142.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 51.32390 REMARK 3 B22 (A**2) : -9.34130 REMARK 3 B33 (A**2) : -41.98260 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7067 REMARK 3 ANGLE : 1.498 9648 REMARK 3 CHIRALITY : 0.099 1184 REMARK 3 PLANARITY : 0.007 1159 REMARK 3 DIHEDRAL : 23.310 4190 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 12:180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2575 48.2510 39.3520 REMARK 3 T TENSOR REMARK 3 T11: 0.9494 T22: 0.6135 REMARK 3 T33: 0.5786 T12: 0.2425 REMARK 3 T13: -0.1217 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 2.2784 L22: 3.1673 REMARK 3 L33: 6.8819 L12: -0.0153 REMARK 3 L13: -1.2499 L23: -0.8607 REMARK 3 S TENSOR REMARK 3 S11: 0.1842 S12: 0.1960 S13: -0.5144 REMARK 3 S21: -1.0907 S22: -0.3196 S23: 0.1263 REMARK 3 S31: 0.7803 S32: 0.3467 S33: 0.1580 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 193:403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5913 48.8427 42.7329 REMARK 3 T TENSOR REMARK 3 T11: 0.4106 T22: 0.4247 REMARK 3 T33: 0.5121 T12: 0.2645 REMARK 3 T13: -0.1776 T23: -0.2122 REMARK 3 L TENSOR REMARK 3 L11: 1.2101 L22: 1.9480 REMARK 3 L33: 6.7795 L12: -0.3406 REMARK 3 L13: 0.9982 L23: -1.2664 REMARK 3 S TENSOR REMARK 3 S11: 0.5124 S12: 0.4353 S13: -0.2298 REMARK 3 S21: -0.1756 S22: -0.4357 S23: 0.0316 REMARK 3 S31: 0.4309 S32: 0.2567 S33: -0.0141 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 404:466 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1041 53.9983 56.0674 REMARK 3 T TENSOR REMARK 3 T11: -0.0427 T22: 0.5752 REMARK 3 T33: 0.1266 T12: 0.0560 REMARK 3 T13: -0.1735 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 4.9289 L22: 5.4340 REMARK 3 L33: 5.0891 L12: -0.6193 REMARK 3 L13: 1.6651 L23: 1.5392 REMARK 3 S TENSOR REMARK 3 S11: -0.4407 S12: 0.5198 S13: 0.8038 REMARK 3 S21: -0.7918 S22: 0.7422 S23: -0.3700 REMARK 3 S31: -1.7531 S32: 0.5594 S33: 0.8632 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 491:501 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6023 39.1703 37.9793 REMARK 3 T TENSOR REMARK 3 T11: 0.4642 T22: 1.0577 REMARK 3 T33: 1.4476 T12: 0.4780 REMARK 3 T13: -0.2149 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 9.5454 L22: 4.1309 REMARK 3 L33: 3.1310 L12: -3.6641 REMARK 3 L13: -0.1277 L23: -0.2693 REMARK 3 S TENSOR REMARK 3 S11: -0.3735 S12: -0.3037 S13: 0.6438 REMARK 3 S21: 0.3964 S22: 0.2206 S23: -0.7184 REMARK 3 S31: -0.0928 S32: 0.6671 S33: 0.1363 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 12:181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0490 49.6366 90.7782 REMARK 3 T TENSOR REMARK 3 T11: 0.7722 T22: 1.1977 REMARK 3 T33: 0.7326 T12: 0.0465 REMARK 3 T13: -0.2545 T23: -0.0473 REMARK 3 L TENSOR REMARK 3 L11: 2.5206 L22: 3.0370 REMARK 3 L33: 5.6041 L12: -0.1497 REMARK 3 L13: 0.7849 L23: -1.0622 REMARK 3 S TENSOR REMARK 3 S11: -0.3247 S12: -0.5662 S13: -0.1489 REMARK 3 S21: 0.9485 S22: -0.0538 S23: -0.1888 REMARK 3 S31: -0.9790 S32: 1.8700 S33: 0.2751 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 193:403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8537 49.2078 87.3272 REMARK 3 T TENSOR REMARK 3 T11: 0.7795 T22: 0.7734 REMARK 3 T33: 0.5601 T12: 0.2338 REMARK 3 T13: -0.1519 T23: -0.2198 REMARK 3 L TENSOR REMARK 3 L11: 1.4281 L22: 2.5273 REMARK 3 L33: 6.2818 L12: 0.5200 REMARK 3 L13: -0.2736 L23: -0.0690 REMARK 3 S TENSOR REMARK 3 S11: -0.2713 S12: 0.1030 S13: 0.2784 REMARK 3 S21: 1.1217 S22: 0.1664 S23: -0.4091 REMARK 3 S31: -1.0600 S32: 1.1881 S33: -0.0154 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 404:468 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9994 48.8712 73.7446 REMARK 3 T TENSOR REMARK 3 T11: 0.5988 T22: 0.5801 REMARK 3 T33: 0.4942 T12: 0.0946 REMARK 3 T13: -0.0274 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 7.8085 L22: 7.9782 REMARK 3 L33: 5.5223 L12: 0.6166 REMARK 3 L13: -1.0620 L23: 0.2741 REMARK 3 S TENSOR REMARK 3 S11: 0.3814 S12: 0.6691 S13: -0.0612 REMARK 3 S21: 0.9382 S22: -0.2333 S23: 0.4036 REMARK 3 S31: -0.7693 S32: -0.4791 S33: 0.0260 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 491:501 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9917 58.3420 92.3289 REMARK 3 T TENSOR REMARK 3 T11: 1.1711 T22: 1.3939 REMARK 3 T33: 1.7277 T12: -0.2723 REMARK 3 T13: -0.0822 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 3.0036 L22: 3.1256 REMARK 3 L33: 2.8628 L12: 1.9780 REMARK 3 L13: -0.7308 L23: 1.7309 REMARK 3 S TENSOR REMARK 3 S11: 0.1910 S12: 1.6455 S13: 0.8407 REMARK 3 S21: 1.5941 S22: 1.0551 S23: -1.0423 REMARK 3 S31: -1.0960 S32: 0.6565 S33: -1.4721 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DJK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070409. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97947 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21370 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.097 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 19.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG400, 100MM TRIS-HCL, 200MM REMARK 280 NACL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.98100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.99100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.20400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.99100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.98100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.20400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 VAL A 5 REMARK 465 GLN A 6 REMARK 465 THR A 7 REMARK 465 GLY A 8 REMARK 465 LYS A 9 REMARK 465 ALA A 10 REMARK 465 LYS A 11 REMARK 465 GLU A 71 REMARK 465 GLU A 72 REMARK 465 GLY A 73 REMARK 465 SER A 181 REMARK 465 GLY A 182 REMARK 465 ALA A 183 REMARK 465 PRO A 184 REMARK 465 VAL A 185 REMARK 465 ALA A 186 REMARK 465 ILE A 187 REMARK 465 GLU A 188 REMARK 465 MET A 189 REMARK 465 ASP A 190 REMARK 465 SER A 191 REMARK 465 LYS A 192 REMARK 465 HIS A 467 REMARK 465 ASP A 468 REMARK 465 ARG A 469 REMARK 465 LYS A 470 REMARK 465 GLY A 471 REMARK 465 LYS A 472 REMARK 465 ALA A 473 REMARK 465 ASN A 474 REMARK 465 THR A 475 REMARK 465 GLY A 476 REMARK 465 VAL A 477 REMARK 465 THR A 478 REMARK 465 LEU A 479 REMARK 465 GLU A 480 REMARK 465 PRO A 481 REMARK 465 ILE A 482 REMARK 465 ASN A 483 REMARK 465 SER A 484 REMARK 465 GLN A 485 REMARK 465 ASN A 486 REMARK 465 ALA A 487 REMARK 465 PRO A 488 REMARK 465 LYS A 489 REMARK 465 GLY A 490 REMARK 465 HIS A 502 REMARK 465 TYR A 503 REMARK 465 ILE A 504 REMARK 465 VAL A 505 REMARK 465 MET A 506 REMARK 465 ASN A 507 REMARK 465 ASP A 508 REMARK 465 LYS A 509 REMARK 465 LYS A 510 REMARK 465 HIS A 511 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 VAL B 5 REMARK 465 GLN B 6 REMARK 465 THR B 7 REMARK 465 GLY B 8 REMARK 465 LYS B 9 REMARK 465 ALA B 10 REMARK 465 LYS B 11 REMARK 465 GLU B 71 REMARK 465 GLU B 72 REMARK 465 GLY B 73 REMARK 465 GLY B 182 REMARK 465 ALA B 183 REMARK 465 PRO B 184 REMARK 465 VAL B 185 REMARK 465 ALA B 186 REMARK 465 ILE B 187 REMARK 465 GLU B 188 REMARK 465 MET B 189 REMARK 465 ASP B 190 REMARK 465 SER B 191 REMARK 465 LYS B 192 REMARK 465 ALA B 328 REMARK 465 ARG B 469 REMARK 465 LYS B 470 REMARK 465 GLY B 471 REMARK 465 LYS B 472 REMARK 465 ALA B 473 REMARK 465 ASN B 474 REMARK 465 THR B 475 REMARK 465 GLY B 476 REMARK 465 VAL B 477 REMARK 465 THR B 478 REMARK 465 LEU B 479 REMARK 465 GLU B 480 REMARK 465 PRO B 481 REMARK 465 ILE B 482 REMARK 465 ASN B 483 REMARK 465 SER B 484 REMARK 465 GLN B 485 REMARK 465 ASN B 486 REMARK 465 ALA B 487 REMARK 465 PRO B 488 REMARK 465 LYS B 489 REMARK 465 GLY B 490 REMARK 465 HIS B 502 REMARK 465 TYR B 503 REMARK 465 ILE B 504 REMARK 465 VAL B 505 REMARK 465 MET B 506 REMARK 465 ASN B 507 REMARK 465 ASP B 508 REMARK 465 LYS B 509 REMARK 465 LYS B 510 REMARK 465 HIS B 511 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 402 OG1 CG2 REMARK 470 THR B 402 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET B 279 N HIS B 281 1.94 REMARK 500 O THR B 22 N SER B 24 1.98 REMARK 500 O ASP A 126 OG1 THR A 129 1.99 REMARK 500 O PRO A 406 N GLY A 408 2.03 REMARK 500 O SER A 441 N ASP A 443 2.05 REMARK 500 O ALA A 168 N LEU A 171 2.06 REMARK 500 O ILE A 117 N LYS A 119 2.08 REMARK 500 O GLU B 304 OG SER B 307 2.09 REMARK 500 O SER B 38 OG SER B 41 2.10 REMARK 500 O PHE B 76 OG SER B 80 2.10 REMARK 500 O THR B 222 N VAL B 224 2.11 REMARK 500 OE2 GLU B 218 OH TYR B 378 2.12 REMARK 500 O LEU B 240 N VAL B 243 2.15 REMARK 500 O MET A 279 N HIS A 281 2.15 REMARK 500 O VAL A 29 N TYR A 32 2.15 REMARK 500 O ALA A 245 OG SER A 249 2.16 REMARK 500 O THR A 222 N VAL A 224 2.16 REMARK 500 O HIS A 491 N PHE A 493 2.18 REMARK 500 N GLY B 361 OG1 THR B 442 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 261 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 20 -76.11 -105.63 REMARK 500 ILE A 21 -30.82 -33.99 REMARK 500 SER A 24 -35.56 -34.23 REMARK 500 TYR A 30 -28.18 -38.27 REMARK 500 SER A 41 2.81 -65.73 REMARK 500 TRP A 53 -59.45 -125.88 REMARK 500 ALA A 62 -70.49 -66.61 REMARK 500 ALA A 65 0.09 -65.95 REMARK 500 VAL A 67 -23.77 162.61 REMARK 500 LEU A 83 23.65 -141.03 REMARK 500 TYR A 96 -50.61 -131.06 REMARK 500 ALA A 100 -12.71 -37.89 REMARK 500 ILE A 117 -89.43 -105.69 REMARK 500 LEU A 118 4.70 -42.22 REMARK 500 LYS A 119 91.02 49.70 REMARK 500 TRP A 120 102.65 -177.18 REMARK 500 THR A 149 32.59 -95.25 REMARK 500 THR A 152 -64.83 -8.47 REMARK 500 ILE A 164 -52.13 -165.08 REMARK 500 ALA A 168 -77.37 -59.87 REMARK 500 PHE A 169 -38.54 -32.07 REMARK 500 PHE A 194 77.36 21.28 REMARK 500 PHE A 195 138.49 -38.76 REMARK 500 HIS A 223 27.65 -56.41 REMARK 500 GLU A 226 1.57 -50.17 REMARK 500 ASP A 233 -62.67 174.37 REMARK 500 LEU A 240 -78.81 -63.51 REMARK 500 LEU A 241 -49.01 -18.21 REMARK 500 ALA A 244 -79.72 -43.75 REMARK 500 ALA A 245 -16.71 -42.49 REMARK 500 ASN A 263 -32.44 -139.76 REMARK 500 ALA A 269 -94.13 -60.40 REMARK 500 VAL A 271 -72.98 -56.54 REMARK 500 SER A 280 73.87 -50.05 REMARK 500 HIS A 281 79.36 156.66 REMARK 500 VAL A 282 37.41 86.03 REMARK 500 GLU A 285 -14.96 63.64 REMARK 500 GLU A 287 37.45 -56.80 REMARK 500 TRP A 288 -37.83 -134.98 REMARK 500 VAL A 310 -36.73 -130.95 REMARK 500 ASN A 323 10.11 43.24 REMARK 500 ALA A 328 5.37 41.27 REMARK 500 PHE A 329 56.27 -65.81 REMARK 500 LYS A 331 7.33 -150.10 REMARK 500 MET A 332 101.08 -12.35 REMARK 500 ASN A 333 -90.55 -108.52 REMARK 500 VAL A 337 138.11 167.52 REMARK 500 PRO A 338 -165.94 -69.33 REMARK 500 VAL A 339 -69.70 -161.15 REMARK 500 ASN A 363 10.61 -64.67 REMARK 500 REMARK 500 THIS ENTRY HAS 145 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 337 PRO B 338 -137.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DJI RELATED DB: PDB DBREF 4DJK A 1 511 UNP P63235 GADC_ECOLI 1 511 DBREF 4DJK B 1 511 UNP P63235 GADC_ECOLI 1 511 SEQRES 1 A 511 MET ALA THR SER VAL GLN THR GLY LYS ALA LYS GLN LEU SEQRES 2 A 511 THR LEU LEU GLY PHE PHE ALA ILE THR ALA SER MET VAL SEQRES 3 A 511 MET ALA VAL TYR GLU TYR PRO THR PHE ALA THR SER GLY SEQRES 4 A 511 PHE SER LEU VAL PHE PHE LEU LEU LEU GLY GLY ILE LEU SEQRES 5 A 511 TRP PHE ILE PRO VAL GLY LEU CYS ALA ALA GLU MET ALA SEQRES 6 A 511 THR VAL ASP GLY TRP GLU GLU GLY GLY VAL PHE ALA TRP SEQRES 7 A 511 VAL SER ASN THR LEU GLY PRO ARG TRP GLY PHE ALA ALA SEQRES 8 A 511 ILE SER PHE GLY TYR LEU GLN ILE ALA ILE GLY PHE ILE SEQRES 9 A 511 PRO MET LEU TYR PHE VAL LEU GLY ALA LEU SER TYR ILE SEQRES 10 A 511 LEU LYS TRP PRO ALA LEU ASN GLU ASP PRO ILE THR LYS SEQRES 11 A 511 THR ILE ALA ALA LEU ILE ILE LEU TRP ALA LEU ALA LEU SEQRES 12 A 511 THR GLN PHE GLY GLY THR LYS TYR THR ALA ARG ILE ALA SEQRES 13 A 511 LYS VAL GLY PHE PHE ALA GLY ILE LEU LEU PRO ALA PHE SEQRES 14 A 511 ILE LEU ILE ALA LEU ALA ALA ILE TYR LEU HIS SER GLY SEQRES 15 A 511 ALA PRO VAL ALA ILE GLU MET ASP SER LYS THR PHE PHE SEQRES 16 A 511 PRO ASP PHE SER LYS VAL GLY THR LEU VAL VAL PHE VAL SEQRES 17 A 511 ALA PHE ILE LEU SER TYR MET GLY VAL GLU ALA SER ALA SEQRES 18 A 511 THR HIS VAL ASN GLU MET SER ASN PRO GLY ARG ASP TYR SEQRES 19 A 511 PRO LEU ALA MET LEU LEU LEU MET VAL ALA ALA ILE CYS SEQRES 20 A 511 LEU SER SER VAL GLY GLY LEU SER ILE ALA MET VAL ILE SEQRES 21 A 511 PRO GLY ASN GLU ILE ASN LEU SER ALA GLY VAL MET GLN SEQRES 22 A 511 THR PHE THR VAL LEU MET SER HIS VAL ALA PRO GLU ILE SEQRES 23 A 511 GLU TRP THR VAL ARG VAL ILE SER ALA LEU LEU LEU LEU SEQRES 24 A 511 GLY VAL LEU ALA GLU ILE ALA SER TRP ILE VAL GLY PRO SEQRES 25 A 511 SER ARG GLY MET TYR VAL THR ALA GLN LYS ASN LEU LEU SEQRES 26 A 511 PRO ALA ALA PHE ALA LYS MET ASN LYS ASN GLY VAL PRO SEQRES 27 A 511 VAL THR LEU VAL ILE SER GLN LEU VAL ILE THR SER ILE SEQRES 28 A 511 ALA LEU ILE ILE LEU THR ASN THR GLY GLY GLY ASN ASN SEQRES 29 A 511 MET SER PHE LEU ILE ALA LEU ALA LEU THR VAL VAL ILE SEQRES 30 A 511 TYR LEU CYS ALA TYR PHE MET LEU PHE ILE GLY TYR ILE SEQRES 31 A 511 VAL LEU VAL LEU LYS HIS PRO ASP LEU LYS ARG THR PHE SEQRES 32 A 511 ASN ILE PRO GLY GLY LYS GLY VAL LYS LEU VAL VAL ALA SEQRES 33 A 511 ILE VAL GLY LEU LEU THR SER ILE MET ALA PHE ILE VAL SEQRES 34 A 511 SER PHE LEU PRO PRO ASP ASN ILE GLN GLY ASP SER THR SEQRES 35 A 511 ASP MET TYR VAL GLU LEU LEU VAL VAL SER PHE LEU VAL SEQRES 36 A 511 VAL LEU ALA LEU PRO PHE ILE LEU TYR ALA VAL HIS ASP SEQRES 37 A 511 ARG LYS GLY LYS ALA ASN THR GLY VAL THR LEU GLU PRO SEQRES 38 A 511 ILE ASN SER GLN ASN ALA PRO LYS GLY HIS PHE PHE LEU SEQRES 39 A 511 HIS PRO ARG ALA ARG SER PRO HIS TYR ILE VAL MET ASN SEQRES 40 A 511 ASP LYS LYS HIS SEQRES 1 B 511 MET ALA THR SER VAL GLN THR GLY LYS ALA LYS GLN LEU SEQRES 2 B 511 THR LEU LEU GLY PHE PHE ALA ILE THR ALA SER MET VAL SEQRES 3 B 511 MET ALA VAL TYR GLU TYR PRO THR PHE ALA THR SER GLY SEQRES 4 B 511 PHE SER LEU VAL PHE PHE LEU LEU LEU GLY GLY ILE LEU SEQRES 5 B 511 TRP PHE ILE PRO VAL GLY LEU CYS ALA ALA GLU MET ALA SEQRES 6 B 511 THR VAL ASP GLY TRP GLU GLU GLY GLY VAL PHE ALA TRP SEQRES 7 B 511 VAL SER ASN THR LEU GLY PRO ARG TRP GLY PHE ALA ALA SEQRES 8 B 511 ILE SER PHE GLY TYR LEU GLN ILE ALA ILE GLY PHE ILE SEQRES 9 B 511 PRO MET LEU TYR PHE VAL LEU GLY ALA LEU SER TYR ILE SEQRES 10 B 511 LEU LYS TRP PRO ALA LEU ASN GLU ASP PRO ILE THR LYS SEQRES 11 B 511 THR ILE ALA ALA LEU ILE ILE LEU TRP ALA LEU ALA LEU SEQRES 12 B 511 THR GLN PHE GLY GLY THR LYS TYR THR ALA ARG ILE ALA SEQRES 13 B 511 LYS VAL GLY PHE PHE ALA GLY ILE LEU LEU PRO ALA PHE SEQRES 14 B 511 ILE LEU ILE ALA LEU ALA ALA ILE TYR LEU HIS SER GLY SEQRES 15 B 511 ALA PRO VAL ALA ILE GLU MET ASP SER LYS THR PHE PHE SEQRES 16 B 511 PRO ASP PHE SER LYS VAL GLY THR LEU VAL VAL PHE VAL SEQRES 17 B 511 ALA PHE ILE LEU SER TYR MET GLY VAL GLU ALA SER ALA SEQRES 18 B 511 THR HIS VAL ASN GLU MET SER ASN PRO GLY ARG ASP TYR SEQRES 19 B 511 PRO LEU ALA MET LEU LEU LEU MET VAL ALA ALA ILE CYS SEQRES 20 B 511 LEU SER SER VAL GLY GLY LEU SER ILE ALA MET VAL ILE SEQRES 21 B 511 PRO GLY ASN GLU ILE ASN LEU SER ALA GLY VAL MET GLN SEQRES 22 B 511 THR PHE THR VAL LEU MET SER HIS VAL ALA PRO GLU ILE SEQRES 23 B 511 GLU TRP THR VAL ARG VAL ILE SER ALA LEU LEU LEU LEU SEQRES 24 B 511 GLY VAL LEU ALA GLU ILE ALA SER TRP ILE VAL GLY PRO SEQRES 25 B 511 SER ARG GLY MET TYR VAL THR ALA GLN LYS ASN LEU LEU SEQRES 26 B 511 PRO ALA ALA PHE ALA LYS MET ASN LYS ASN GLY VAL PRO SEQRES 27 B 511 VAL THR LEU VAL ILE SER GLN LEU VAL ILE THR SER ILE SEQRES 28 B 511 ALA LEU ILE ILE LEU THR ASN THR GLY GLY GLY ASN ASN SEQRES 29 B 511 MET SER PHE LEU ILE ALA LEU ALA LEU THR VAL VAL ILE SEQRES 30 B 511 TYR LEU CYS ALA TYR PHE MET LEU PHE ILE GLY TYR ILE SEQRES 31 B 511 VAL LEU VAL LEU LYS HIS PRO ASP LEU LYS ARG THR PHE SEQRES 32 B 511 ASN ILE PRO GLY GLY LYS GLY VAL LYS LEU VAL VAL ALA SEQRES 33 B 511 ILE VAL GLY LEU LEU THR SER ILE MET ALA PHE ILE VAL SEQRES 34 B 511 SER PHE LEU PRO PRO ASP ASN ILE GLN GLY ASP SER THR SEQRES 35 B 511 ASP MET TYR VAL GLU LEU LEU VAL VAL SER PHE LEU VAL SEQRES 36 B 511 VAL LEU ALA LEU PRO PHE ILE LEU TYR ALA VAL HIS ASP SEQRES 37 B 511 ARG LYS GLY LYS ALA ASN THR GLY VAL THR LEU GLU PRO SEQRES 38 B 511 ILE ASN SER GLN ASN ALA PRO LYS GLY HIS PHE PHE LEU SEQRES 39 B 511 HIS PRO ARG ALA ARG SER PRO HIS TYR ILE VAL MET ASN SEQRES 40 B 511 ASP LYS LYS HIS HELIX 1 1 THR A 14 THR A 22 1 9 HELIX 2 2 ALA A 23 MET A 27 5 5 HELIX 3 3 ALA A 28 TYR A 30 5 3 HELIX 4 4 GLU A 31 THR A 37 1 7 HELIX 5 5 PHE A 40 TRP A 53 1 14 HELIX 6 6 TRP A 53 THR A 66 1 14 HELIX 7 7 VAL A 75 GLY A 84 1 10 HELIX 8 8 GLY A 84 PHE A 103 1 20 HELIX 9 9 PHE A 103 TYR A 116 1 14 HELIX 10 10 TRP A 120 ASN A 124 5 5 HELIX 11 11 ILE A 128 GLY A 147 1 20 HELIX 12 12 TYR A 151 ALA A 156 1 6 HELIX 13 13 ALA A 156 GLY A 163 1 8 HELIX 14 14 ILE A 164 LEU A 179 1 16 HELIX 15 15 VAL A 206 MET A 215 1 10 HELIX 16 16 GLY A 216 ASN A 225 5 10 HELIX 17 17 ASP A 233 MET A 258 1 26 HELIX 18 18 GLY A 270 SER A 280 1 11 HELIX 19 19 TRP A 288 ILE A 309 1 22 HELIX 20 20 VAL A 310 MET A 316 1 7 HELIX 21 21 TYR A 317 LYS A 322 1 6 HELIX 22 22 ASN A 323 LEU A 325 5 3 HELIX 23 23 VAL A 339 ASN A 358 1 20 HELIX 24 24 GLY A 361 HIS A 396 1 36 HELIX 25 25 LYS A 409 SER A 430 1 22 HELIX 26 26 MET A 444 VAL A 466 1 23 HELIX 27 27 THR B 14 THR B 22 1 9 HELIX 28 28 GLU B 31 THR B 37 1 7 HELIX 29 29 PHE B 40 TRP B 53 1 14 HELIX 30 30 TRP B 53 THR B 66 1 14 HELIX 31 31 VAL B 75 LEU B 83 1 9 HELIX 32 32 PRO B 85 LEU B 118 1 34 HELIX 33 33 TRP B 120 ASN B 124 5 5 HELIX 34 34 ASP B 126 GLY B 147 1 22 HELIX 35 35 TYR B 151 GLY B 163 1 13 HELIX 36 36 ILE B 164 LEU B 179 1 16 HELIX 37 37 VAL B 206 MET B 215 1 10 HELIX 38 38 ALA B 221 ASN B 225 5 5 HELIX 39 39 ASP B 233 MET B 258 1 26 HELIX 40 40 ALA B 269 SER B 280 1 12 HELIX 41 41 TRP B 288 ILE B 309 1 22 HELIX 42 42 VAL B 310 MET B 316 1 7 HELIX 43 43 TYR B 317 LYS B 322 1 6 HELIX 44 44 ASN B 323 LEU B 325 5 3 HELIX 45 45 VAL B 337 ASN B 358 1 22 HELIX 46 46 ASN B 364 HIS B 396 1 33 HELIX 47 47 LYS B 409 SER B 430 1 22 HELIX 48 48 MET B 444 ALA B 465 1 22 HELIX 49 49 HIS B 495 ARG B 499 5 5 CISPEP 1 ASP A 68 GLY A 69 0 1.22 CISPEP 2 PRO A 127 ILE A 128 0 5.61 CISPEP 3 LYS A 334 ASN A 335 0 -3.92 CISPEP 4 GLY A 336 VAL A 337 0 -0.22 CISPEP 5 ASP A 398 LEU A 399 0 -4.61 CISPEP 6 ASP A 440 SER A 441 0 -1.26 CISPEP 7 ASP B 68 GLY B 69 0 0.11 CISPEP 8 ALA B 219 SER B 220 0 14.22 CISPEP 9 PRO B 261 GLY B 262 0 -0.94 CISPEP 10 ALA B 283 PRO B 284 0 -3.39 CISPEP 11 ASP B 398 LEU B 399 0 -5.54 CRYST1 71.962 106.408 185.982 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013896 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009398 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005377 0.00000