HEADER NUCLEAR PROTEIN 02-FEB-12 4DJT TITLE CRYSTAL STRUCTURE OF A NUCLEAR GTP-BINDING PROTEIN FROM TITLE 2 ENCEPHALITOZOON CUNICULI BOUND TO GDP-MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING NUCLEAR PROTEIN GSP1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GTPASE RAN HOMOLOG; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENCEPHALITOZOON CUNICULI; SOURCE 3 ORGANISM_COMMON: MICROSPORIDIAN PARASITE; SOURCE 4 ORGANISM_TAXID: 284813; SOURCE 5 STRAIN: GB-M1; SOURCE 6 GENE: ECU04_1560, GSP1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PAVA0421 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, RAN FAMILY, GTPASE, LATE SPOROGONIAL KEYWDS 3 STAGE, NUCLEOCYTOPLASMIC TRANSPORT, RNA EXPORT, NUCLEAR TRANSPORT, KEYWDS 4 FUNGUS, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 13-SEP-23 4DJT 1 REMARK SEQADV LINK REVDAT 1 15-FEB-12 4DJT 0 JRNL AUTH T.E.EDWARDS,J.ABENDROTH, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 3 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF A NUCLEAR GTP-BINDING PROTEIN FROM JRNL TITL 2 ENCEPHALITOZOON CUNICULI BOUND TO GDP-MG2+ JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 34887 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1740 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2218 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3021 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.16000 REMARK 3 B22 (A**2) : -0.82000 REMARK 3 B33 (A**2) : -0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.33000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.206 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3182 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2035 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4349 ; 1.395 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4971 ; 0.835 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 396 ; 6.572 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;33.770 ;24.552 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 484 ;12.010 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.141 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 491 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3559 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 673 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3274 14.1618 25.5962 REMARK 3 T TENSOR REMARK 3 T11: 0.0710 T22: 0.0240 REMARK 3 T33: 0.0580 T12: -0.0019 REMARK 3 T13: -0.0229 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.6408 L22: 1.1543 REMARK 3 L33: 0.6600 L12: 0.7912 REMARK 3 L13: 0.5106 L23: 0.4371 REMARK 3 S TENSOR REMARK 3 S11: -0.0494 S12: -0.0354 S13: 0.0519 REMARK 3 S21: -0.0415 S22: -0.0262 S23: 0.0746 REMARK 3 S31: -0.0674 S32: -0.0327 S33: 0.0756 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2683 1.7369 31.9713 REMARK 3 T TENSOR REMARK 3 T11: 0.0778 T22: 0.0386 REMARK 3 T33: 0.0762 T12: -0.0221 REMARK 3 T13: -0.0373 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 1.8480 L22: 2.1557 REMARK 3 L33: 0.7555 L12: 1.3915 REMARK 3 L13: -0.2849 L23: 0.6733 REMARK 3 S TENSOR REMARK 3 S11: 0.1825 S12: 0.0638 S13: -0.2878 REMARK 3 S21: 0.3447 S22: -0.1440 S23: -0.3143 REMARK 3 S31: 0.1343 S32: -0.1614 S33: -0.0385 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4944 4.7185 21.3311 REMARK 3 T TENSOR REMARK 3 T11: 0.0624 T22: 0.0492 REMARK 3 T33: 0.0526 T12: -0.0270 REMARK 3 T13: 0.0199 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.1826 L22: 1.4174 REMARK 3 L33: 0.6531 L12: 0.4820 REMARK 3 L13: 0.1915 L23: 0.6797 REMARK 3 S TENSOR REMARK 3 S11: -0.0469 S12: 0.0356 S13: -0.0377 REMARK 3 S21: -0.0535 S22: 0.0671 S23: -0.0617 REMARK 3 S31: -0.0351 S32: 0.0825 S33: -0.0203 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -3 B 5 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4304 -24.1041 18.5179 REMARK 3 T TENSOR REMARK 3 T11: 0.1052 T22: 0.1037 REMARK 3 T33: 0.1160 T12: -0.1008 REMARK 3 T13: -0.0951 T23: 0.1044 REMARK 3 L TENSOR REMARK 3 L11: 11.5410 L22: 2.8397 REMARK 3 L33: 6.7124 L12: 5.7235 REMARK 3 L13: -8.8016 L23: -4.3647 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: 0.1030 S13: 0.0214 REMARK 3 S21: 0.0356 S22: 0.0159 S23: -0.0015 REMARK 3 S31: -0.0368 S32: -0.0802 S33: -0.0422 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 122 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2284 -13.2261 -2.0941 REMARK 3 T TENSOR REMARK 3 T11: 0.0710 T22: 0.0849 REMARK 3 T33: 0.0407 T12: -0.0532 REMARK 3 T13: -0.0443 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.3796 L22: 1.1036 REMARK 3 L33: 0.5690 L12: 0.5589 REMARK 3 L13: -0.1680 L23: 0.0829 REMARK 3 S TENSOR REMARK 3 S11: -0.1052 S12: 0.0421 S13: 0.1125 REMARK 3 S21: -0.1844 S22: 0.1907 S23: 0.1550 REMARK 3 S31: 0.0781 S32: 0.0827 S33: -0.0855 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 123 B 206 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1332 -10.9229 0.5305 REMARK 3 T TENSOR REMARK 3 T11: 0.0346 T22: 0.0646 REMARK 3 T33: 0.0474 T12: 0.0120 REMARK 3 T13: 0.0009 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.4844 L22: 0.3233 REMARK 3 L33: 0.9653 L12: 0.1388 REMARK 3 L13: -0.6737 L23: -0.1252 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: -0.0226 S13: 0.0630 REMARK 3 S21: 0.0393 S22: 0.0714 S23: 0.0663 REMARK 3 S31: 0.0304 S32: 0.0513 S33: -0.0706 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4DJT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070418. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34910 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PDB ENTRY 1QG4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ENCUA.01002.A.A1 PS00532 AT 44.6 MG/ML REMARK 280 WITH 5 MM GDP AGAINST CSHT SCREEN CONDITION H2: 0.1 M HEPES, PH REMARK 280 7.5, 20% PEG10000, CRYOPROTECTANT: 20% ETHYLENE GLYCOL, CRYSTAL REMARK 280 TRACKING ID 225457H2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.62500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 GLU A 5 REMARK 465 LYS A 126 REMARK 465 ASN A 127 REMARK 465 ARG A 128 REMARK 465 GLN A 129 REMARK 465 GLU A 196 REMARK 465 GLU A 197 REMARK 465 SER A 198 REMARK 465 LYS A 199 REMARK 465 TYR A 200 REMARK 465 ILE A 201 REMARK 465 ASP A 202 REMARK 465 TYR A 203 REMARK 465 MET A 204 REMARK 465 GLU A 205 REMARK 465 GLN A 206 REMARK 465 ALA A 207 REMARK 465 SER A 208 REMARK 465 LYS A 209 REMARK 465 MET A 210 REMARK 465 ALA A 211 REMARK 465 PRO A 212 REMARK 465 GLU A 213 REMARK 465 GLU A 214 REMARK 465 ASN B 127 REMARK 465 ARG B 128 REMARK 465 GLN B 129 REMARK 465 LYS B 130 REMARK 465 ILE B 131 REMARK 465 SER B 132 REMARK 465 ALA B 207 REMARK 465 SER B 208 REMARK 465 LYS B 209 REMARK 465 MET B 210 REMARK 465 ALA B 211 REMARK 465 PRO B 212 REMARK 465 GLU B 213 REMARK 465 GLU B 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 94 CG1 CG2 CD1 REMARK 470 GLN A 97 CG CD OE1 NE2 REMARK 470 ARG A 101 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 GLU B 2 CG CD OE1 OE2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 GLU B 113 CG CD OE1 OE2 REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 LYS B 134 CG CD CE NZ REMARK 470 GLU B 138 CG CD OE1 OE2 REMARK 470 LYS B 141 CG CD CE NZ REMARK 470 GLU B 196 CG CD OE1 OE2 REMARK 470 GLU B 197 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 138 O HOH A 413 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 156 CG HIS A 156 CD2 0.054 REMARK 500 HIS B 156 CG HIS B 156 CD2 0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 28 -130.75 52.18 REMARK 500 LEU B 28 -132.46 53.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 21 OG1 REMARK 620 2 GDP A 301 O1B 86.6 REMARK 620 3 HOH A 473 O 92.5 84.7 REMARK 620 4 HOH A 474 O 174.1 92.8 93.3 REMARK 620 5 HOH A 475 O 86.8 94.3 178.8 87.4 REMARK 620 6 HOH A 476 O 87.9 173.5 92.2 93.0 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 21 OG1 REMARK 620 2 GDP B 301 O3B 91.2 REMARK 620 3 HOH B 490 O 175.5 89.8 REMARK 620 4 HOH B 491 O 89.4 96.2 86.1 REMARK 620 5 HOH B 492 O 87.1 178.3 91.8 83.7 REMARK 620 6 HOH B 493 O 93.4 89.0 91.0 174.0 91.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 199 O REMARK 620 2 HOH B 459 O 98.3 REMARK 620 3 HOH B 517 O 86.2 90.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-ENCUA.01002.A RELATED DB: TARGETTRACK DBREF 4DJT A 1 214 UNP Q8SS11 GSP1_ENCCU 1 214 DBREF 4DJT B 1 214 UNP Q8SS11 GSP1_ENCCU 1 214 SEQADV 4DJT GLY A -3 UNP Q8SS11 EXPRESSION TAG SEQADV 4DJT PRO A -2 UNP Q8SS11 EXPRESSION TAG SEQADV 4DJT GLY A -1 UNP Q8SS11 EXPRESSION TAG SEQADV 4DJT SER A 0 UNP Q8SS11 EXPRESSION TAG SEQADV 4DJT LEU A 86 UNP Q8SS11 PHE 86 CLONING ARTIFACT SEQADV 4DJT GLY B -3 UNP Q8SS11 EXPRESSION TAG SEQADV 4DJT PRO B -2 UNP Q8SS11 EXPRESSION TAG SEQADV 4DJT GLY B -1 UNP Q8SS11 EXPRESSION TAG SEQADV 4DJT SER B 0 UNP Q8SS11 EXPRESSION TAG SEQADV 4DJT LEU B 86 UNP Q8SS11 PHE 86 CLONING ARTIFACT SEQRES 1 A 218 GLY PRO GLY SER MET GLU ARG ARG GLU LEU THR TYR LYS SEQRES 2 A 218 ILE CYS LEU ILE GLY ASP GLY GLY VAL GLY LYS THR THR SEQRES 3 A 218 TYR ILE ASN ARG VAL LEU ASP GLY ARG PHE GLU LYS ASN SEQRES 4 A 218 TYR ASN ALA THR VAL GLY ALA VAL ASN HIS PRO VAL THR SEQRES 5 A 218 PHE LEU ASP ASP GLN GLY ASN VAL ILE LYS PHE ASN VAL SEQRES 6 A 218 TRP ASP THR ALA GLY GLN GLU LYS LYS ALA VAL LEU LYS SEQRES 7 A 218 ASP VAL TYR TYR ILE GLY ALA SER GLY ALA ILE LEU PHE SEQRES 8 A 218 PHE ASP VAL THR SER ARG ILE THR CYS GLN ASN LEU ALA SEQRES 9 A 218 ARG TRP VAL LYS GLU PHE GLN ALA VAL VAL GLY ASN GLU SEQRES 10 A 218 ALA PRO ILE VAL VAL CYS ALA ASN LYS ILE ASP ILE LYS SEQRES 11 A 218 ASN ARG GLN LYS ILE SER LYS LYS LEU VAL MET GLU VAL SEQRES 12 A 218 LEU LYS GLY LYS ASN TYR GLU TYR PHE GLU ILE SER ALA SEQRES 13 A 218 LYS THR ALA HIS ASN PHE GLY LEU PRO PHE LEU HIS LEU SEQRES 14 A 218 ALA ARG ILE PHE THR GLY ARG PRO ASP LEU ILE PHE VAL SEQRES 15 A 218 SER ASN VAL ASN LEU GLU PRO THR GLU VAL ASN TYR ASP SEQRES 16 A 218 TYR HIS SER PRO GLU GLU SER LYS TYR ILE ASP TYR MET SEQRES 17 A 218 GLU GLN ALA SER LYS MET ALA PRO GLU GLU SEQRES 1 B 218 GLY PRO GLY SER MET GLU ARG ARG GLU LEU THR TYR LYS SEQRES 2 B 218 ILE CYS LEU ILE GLY ASP GLY GLY VAL GLY LYS THR THR SEQRES 3 B 218 TYR ILE ASN ARG VAL LEU ASP GLY ARG PHE GLU LYS ASN SEQRES 4 B 218 TYR ASN ALA THR VAL GLY ALA VAL ASN HIS PRO VAL THR SEQRES 5 B 218 PHE LEU ASP ASP GLN GLY ASN VAL ILE LYS PHE ASN VAL SEQRES 6 B 218 TRP ASP THR ALA GLY GLN GLU LYS LYS ALA VAL LEU LYS SEQRES 7 B 218 ASP VAL TYR TYR ILE GLY ALA SER GLY ALA ILE LEU PHE SEQRES 8 B 218 PHE ASP VAL THR SER ARG ILE THR CYS GLN ASN LEU ALA SEQRES 9 B 218 ARG TRP VAL LYS GLU PHE GLN ALA VAL VAL GLY ASN GLU SEQRES 10 B 218 ALA PRO ILE VAL VAL CYS ALA ASN LYS ILE ASP ILE LYS SEQRES 11 B 218 ASN ARG GLN LYS ILE SER LYS LYS LEU VAL MET GLU VAL SEQRES 12 B 218 LEU LYS GLY LYS ASN TYR GLU TYR PHE GLU ILE SER ALA SEQRES 13 B 218 LYS THR ALA HIS ASN PHE GLY LEU PRO PHE LEU HIS LEU SEQRES 14 B 218 ALA ARG ILE PHE THR GLY ARG PRO ASP LEU ILE PHE VAL SEQRES 15 B 218 SER ASN VAL ASN LEU GLU PRO THR GLU VAL ASN TYR ASP SEQRES 16 B 218 TYR HIS SER PRO GLU GLU SER LYS TYR ILE ASP TYR MET SEQRES 17 B 218 GLU GLN ALA SER LYS MET ALA PRO GLU GLU HET GDP A 301 28 HET MG A 302 1 HET GDP B 301 28 HET MG B 302 1 HET NA B 303 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 NA NA 1+ FORMUL 8 HOH *271(H2 O) HELIX 1 1 GLY A 19 ASN A 25 1 7 HELIX 2 2 GLY A 66 LYS A 70 5 5 HELIX 3 3 LYS A 74 ILE A 79 1 6 HELIX 4 4 SER A 92 ASN A 98 1 7 HELIX 5 5 ASN A 98 GLY A 111 1 14 HELIX 6 6 SER A 132 LEU A 140 1 9 HELIX 7 7 GLY A 159 GLY A 171 1 13 HELIX 8 8 GLY B 19 ASN B 25 1 7 HELIX 9 9 GLY B 30 LYS B 34 5 5 HELIX 10 10 GLY B 66 LYS B 70 5 5 HELIX 11 11 LYS B 74 ILE B 79 1 6 HELIX 12 12 SER B 92 ASN B 98 1 7 HELIX 13 13 ASN B 98 GLY B 111 1 14 HELIX 14 14 LYS B 134 LEU B 140 1 7 HELIX 15 15 GLY B 159 GLY B 171 1 13 SHEET 1 A 7 ASN A 35 ASN A 37 0 SHEET 2 A 7 ALA A 42 LEU A 50 -1 O ALA A 42 N ASN A 37 SHEET 3 A 7 VAL A 56 THR A 64 -1 O ILE A 57 N PHE A 49 SHEET 4 A 7 THR A 7 ILE A 13 1 N ILE A 10 O TRP A 62 SHEET 5 A 7 GLY A 83 ASP A 89 1 O PHE A 87 N ILE A 13 SHEET 6 A 7 ILE A 116 ASN A 121 1 O VAL A 117 N LEU A 86 SHEET 7 A 7 GLU A 146 ILE A 150 1 O GLU A 146 N VAL A 118 SHEET 1 B 7 ASN B 35 ASN B 37 0 SHEET 2 B 7 ALA B 42 LEU B 50 -1 O ALA B 42 N ASN B 37 SHEET 3 B 7 VAL B 56 THR B 64 -1 O PHE B 59 N VAL B 47 SHEET 4 B 7 GLU B 5 ILE B 13 1 N ILE B 10 O TRP B 62 SHEET 5 B 7 GLY B 83 ASP B 89 1 O PHE B 87 N ILE B 13 SHEET 6 B 7 ILE B 116 ASN B 121 1 O CYS B 119 N LEU B 86 SHEET 7 B 7 GLU B 146 GLU B 149 1 O GLU B 146 N VAL B 118 LINK OG1 THR A 21 MG MG A 302 1555 1555 2.08 LINK O1B GDP A 301 MG MG A 302 1555 1555 2.13 LINK MG MG A 302 O HOH A 473 1555 1555 2.10 LINK MG MG A 302 O HOH A 474 1555 1555 2.16 LINK MG MG A 302 O HOH A 475 1555 1555 2.10 LINK MG MG A 302 O HOH A 476 1555 1555 2.03 LINK OG1 THR B 21 MG MG B 302 1555 1555 2.04 LINK O LYS B 199 NA NA B 303 1555 1555 2.46 LINK O3B GDP B 301 MG MG B 302 1555 1555 2.08 LINK MG MG B 302 O HOH B 490 1555 1555 2.19 LINK MG MG B 302 O HOH B 491 1555 1555 1.84 LINK MG MG B 302 O HOH B 492 1555 1555 2.22 LINK MG MG B 302 O HOH B 493 1555 1555 1.98 LINK NA NA B 303 O HOH B 459 1555 1555 2.21 LINK NA NA B 303 O HOH B 517 1555 1555 2.45 SITE 1 AC1 21 ASP A 15 GLY A 17 VAL A 18 GLY A 19 SITE 2 AC1 21 LYS A 20 THR A 21 THR A 22 ASN A 121 SITE 3 AC1 21 LYS A 122 ASP A 124 ILE A 125 SER A 151 SITE 4 AC1 21 ALA A 152 LYS A 153 MG A 302 HOH A 419 SITE 5 AC1 21 HOH A 458 HOH A 473 HOH A 474 HOH A 475 SITE 6 AC1 21 HOH A 527 SITE 1 AC2 6 THR A 21 GDP A 301 HOH A 473 HOH A 474 SITE 2 AC2 6 HOH A 475 HOH A 476 SITE 1 AC3 19 GLY B 17 VAL B 18 GLY B 19 LYS B 20 SITE 2 AC3 19 THR B 21 THR B 22 GLU B 68 ASN B 121 SITE 3 AC3 19 LYS B 122 ASP B 124 ILE B 125 SER B 151 SITE 4 AC3 19 ALA B 152 LYS B 153 MG B 302 HOH B 415 SITE 5 AC3 19 HOH B 490 HOH B 491 HOH B 493 SITE 1 AC4 6 THR B 21 GDP B 301 HOH B 490 HOH B 491 SITE 2 AC4 6 HOH B 492 HOH B 493 SITE 1 AC5 3 LYS B 199 HOH B 459 HOH B 517 CRYST1 42.570 89.250 54.980 90.00 108.06 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023491 0.000000 0.007661 0.00000 SCALE2 0.000000 0.011204 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019131 0.00000