HEADER RNA BINDING PROTEIN/IMMUNE SYSTEM 03-FEB-12 4DK3 TITLE STRUCTURE OF EDITOSOME PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE DOMAIN ANTIBODY VHH; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA-EDITING COMPLEX PROTEIN MP81; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_COMMON: LLAMA; SOURCE 4 ORGANISM_TAXID: 9844; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSF; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 12 ORGANISM_TAXID: 5691; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PRSF KEYWDS KREPA1, VHH, SINGLE DOMAIN ANTIBODY, PROTEIN BINDING, RNA BINDING KEYWDS 2 PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.-J.PARK,W.HOL REVDAT 5 15-NOV-17 4DK3 1 REMARK REVDAT 4 02-AUG-17 4DK3 1 SOURCE REMARK REVDAT 3 18-SEP-13 4DK3 1 SOURCE REMARK REVDAT 2 22-AUG-12 4DK3 1 JRNL REVDAT 1 04-JUL-12 4DK3 0 JRNL AUTH Y.J.PARK,T.BUDIARTO,M.WU,E.PARDON,J.STEYAERT,W.G.HOL JRNL TITL THE STRUCTURE OF THE C-TERMINAL DOMAIN OF THE LARGEST JRNL TITL 2 EDITOSOME INTERACTION PROTEIN AND ITS ROLE IN PROMOTING RNA JRNL TITL 3 BINDING BY RNA-EDITING LIGASE L2. JRNL REF NUCLEIC ACIDS RES. V. 40 6966 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22561373 JRNL DOI 10.1093/NAR/GKS369 REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 94.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 11720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 601 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 652 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.4980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3238 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.08000 REMARK 3 B22 (A**2) : 3.63000 REMARK 3 B33 (A**2) : -0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.805 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.397 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.334 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.423 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3285 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4424 ; 0.917 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 405 ; 4.940 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;34.799 ;23.243 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 567 ;15.732 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;12.777 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 503 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2430 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): -12.9616 10.7283 -42.8275 REMARK 3 T TENSOR REMARK 3 T11: 0.1202 T22: 0.0263 REMARK 3 T33: 0.0518 T12: 0.0452 REMARK 3 T13: 0.0041 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 5.3973 L22: 3.9658 REMARK 3 L33: 6.1380 L12: 0.1005 REMARK 3 L13: -1.4172 L23: -1.5281 REMARK 3 S TENSOR REMARK 3 S11: -0.0232 S12: -0.0775 S13: 0.4535 REMARK 3 S21: 0.1656 S22: 0.1096 S23: 0.1674 REMARK 3 S31: -0.3202 S32: -0.2404 S33: -0.0864 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): -14.6047 13.9187 -43.7487 REMARK 3 T TENSOR REMARK 3 T11: 0.2033 T22: 0.0990 REMARK 3 T33: 0.0777 T12: 0.1285 REMARK 3 T13: 0.0014 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 5.1255 L22: 3.2355 REMARK 3 L33: 7.8866 L12: 0.5461 REMARK 3 L13: -4.2688 L23: -2.0462 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: 0.0900 S13: 0.4385 REMARK 3 S21: 0.0673 S22: 0.2461 S23: 0.2785 REMARK 3 S31: -0.2068 S32: -0.4256 S33: -0.2144 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 81 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6611 15.8237 1.8137 REMARK 3 T TENSOR REMARK 3 T11: 0.1350 T22: 0.3254 REMARK 3 T33: 0.2455 T12: -0.0087 REMARK 3 T13: 0.0373 T23: -0.0979 REMARK 3 L TENSOR REMARK 3 L11: 7.6127 L22: 4.4174 REMARK 3 L33: 7.3819 L12: 1.0915 REMARK 3 L13: 0.0376 L23: -1.2345 REMARK 3 S TENSOR REMARK 3 S11: 0.1592 S12: -0.1220 S13: -0.3724 REMARK 3 S21: -0.2102 S22: 0.0232 S23: -0.4854 REMARK 3 S31: 0.1452 S32: 0.3414 S33: -0.1824 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 82 B 127 REMARK 3 ORIGIN FOR THE GROUP (A): -15.4422 18.9287 0.4907 REMARK 3 T TENSOR REMARK 3 T11: 0.1848 T22: 0.4524 REMARK 3 T33: 0.3123 T12: -0.0136 REMARK 3 T13: 0.0284 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 6.8603 L22: 4.6282 REMARK 3 L33: 9.1826 L12: 3.3820 REMARK 3 L13: -2.9077 L23: -3.2598 REMARK 3 S TENSOR REMARK 3 S11: 0.2096 S12: -0.0384 S13: 0.1594 REMARK 3 S21: -0.5141 S22: 0.4122 S23: -0.1373 REMARK 3 S31: 0.0463 S32: 0.2545 S33: -0.6219 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 627 C 716 REMARK 3 ORIGIN FOR THE GROUP (A): -33.4979 10.0576 -28.3106 REMARK 3 T TENSOR REMARK 3 T11: 0.2628 T22: 0.3021 REMARK 3 T33: 0.3906 T12: 0.2531 REMARK 3 T13: 0.2065 T23: 0.2137 REMARK 3 L TENSOR REMARK 3 L11: 13.2088 L22: 6.2523 REMARK 3 L33: 8.6349 L12: 1.5808 REMARK 3 L13: -4.0507 L23: -2.6914 REMARK 3 S TENSOR REMARK 3 S11: -0.0687 S12: 0.1265 S13: 0.1679 REMARK 3 S21: 0.0954 S22: 0.2553 S23: 0.7928 REMARK 3 S31: -0.5060 S32: -1.0602 S33: -0.1866 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 717 C 761 REMARK 3 ORIGIN FOR THE GROUP (A): -33.5645 4.5710 -26.6515 REMARK 3 T TENSOR REMARK 3 T11: 0.3486 T22: 0.5537 REMARK 3 T33: 0.4526 T12: 0.1483 REMARK 3 T13: 0.2955 T23: 0.2976 REMARK 3 L TENSOR REMARK 3 L11: 7.0793 L22: 12.0032 REMARK 3 L33: 4.2919 L12: -5.5719 REMARK 3 L13: 1.4761 L23: 1.2790 REMARK 3 S TENSOR REMARK 3 S11: 0.1283 S12: 0.2062 S13: -0.5199 REMARK 3 S21: -0.3595 S22: 0.1084 S23: 0.6991 REMARK 3 S31: -0.0864 S32: -0.0967 S33: -0.2367 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 627 D 719 REMARK 3 ORIGIN FOR THE GROUP (A): -34.9051 -9.4722 -11.5887 REMARK 3 T TENSOR REMARK 3 T11: 0.1621 T22: 0.5740 REMARK 3 T33: 0.6185 T12: 0.0868 REMARK 3 T13: 0.1682 T23: 0.4103 REMARK 3 L TENSOR REMARK 3 L11: 5.4242 L22: 6.5559 REMARK 3 L33: 6.5393 L12: -2.0658 REMARK 3 L13: 2.4022 L23: -2.9526 REMARK 3 S TENSOR REMARK 3 S11: 0.1928 S12: 0.0838 S13: -0.0225 REMARK 3 S21: 0.4061 S22: 0.6248 S23: 0.7708 REMARK 3 S31: -0.2291 S32: -1.0003 S33: -0.8176 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 720 D 762 REMARK 3 ORIGIN FOR THE GROUP (A): -33.2556 -3.0086 -14.5488 REMARK 3 T TENSOR REMARK 3 T11: 0.3399 T22: 0.6228 REMARK 3 T33: 0.4630 T12: 0.2401 REMARK 3 T13: 0.0789 T23: 0.3542 REMARK 3 L TENSOR REMARK 3 L11: 4.4189 L22: 8.2550 REMARK 3 L33: 7.8172 L12: 1.1391 REMARK 3 L13: -4.0232 L23: -3.5064 REMARK 3 S TENSOR REMARK 3 S11: 0.3430 S12: -0.2188 S13: 0.3625 REMARK 3 S21: 0.4414 S22: 0.4839 S23: 0.7511 REMARK 3 S31: -0.8466 S32: -0.5879 S33: -0.8269 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4DK3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070428. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : 6M SPHERICAL GRATING REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : M0 MIRROR: TOROIDAL SIC REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12360 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 94.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M AMMONIUM SULFATE, 0.05M SODIUM REMARK 280 ACETATE TRIHYDRATE, 30% W/V PEG 2000 MME, 5% V/V JEFFAMINE M600, REMARK 280 PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.89500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.65500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.89500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.65500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.89500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.65500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.89500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.65500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 ARG C 624 REMARK 465 ALA C 625 REMARK 465 GLY C 626 REMARK 465 GLY C 657 REMARK 465 GLY C 692 REMARK 465 ALA C 693 REMARK 465 SER C 694 REMARK 465 GLY C 695 REMARK 465 GLU C 696 REMARK 465 GLY C 706 REMARK 465 ASP C 707 REMARK 465 ASN C 708 REMARK 465 PHE C 709 REMARK 465 PRO C 710 REMARK 465 ALA C 711 REMARK 465 SER C 712 REMARK 465 LEU C 713 REMARK 465 LEU C 714 REMARK 465 LYS C 715 REMARK 465 VAL C 739 REMARK 465 PRO C 753 REMARK 465 GLY C 762 REMARK 465 ARG D 624 REMARK 465 ALA D 625 REMARK 465 GLY D 626 REMARK 465 ASP D 656 REMARK 465 GLY D 657 REMARK 465 GLY D 692 REMARK 465 ALA D 693 REMARK 465 SER D 694 REMARK 465 GLY D 695 REMARK 465 GLU D 696 REMARK 465 GLY D 706 REMARK 465 ASP D 707 REMARK 465 ASN D 708 REMARK 465 PHE D 709 REMARK 465 PRO D 710 REMARK 465 ALA D 711 REMARK 465 SER D 712 REMARK 465 LEU D 713 REMARK 465 LEU D 714 REMARK 465 LYS D 715 REMARK 465 ASP D 716 REMARK 465 ASP D 737 REMARK 465 ASP D 738 REMARK 465 PRO D 753 REMARK 465 PRO D 754 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 32 -87.69 -126.24 REMARK 500 VAL A 48 -67.90 -95.34 REMARK 500 PRO A 102 85.66 -69.70 REMARK 500 TYR B 32 -79.22 -121.30 REMARK 500 VAL B 48 -71.64 -114.74 REMARK 500 ALA C 645 15.21 57.77 REMARK 500 VAL C 655 -133.98 -90.37 REMARK 500 ASN D 733 74.02 53.25 REMARK 500 LYS D 741 -61.48 68.49 REMARK 500 VAL D 761 -44.14 -130.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DK6 RELATED DB: PDB REMARK 900 RELATED ID: 4DKA RELATED DB: PDB DBREF 4DK3 A 1 133 PDB 4DK3 4DK3 1 133 DBREF 4DK3 B 1 133 PDB 4DK3 4DK3 1 133 DBREF 4DK3 C 624 657 UNP Q95W15 Q95W15_9TRYP 624 657 DBREF 4DK3 C 696 762 UNP Q95W15 Q95W15_9TRYP 696 762 DBREF 4DK3 D 624 657 UNP Q95W15 Q95W15_9TRYP 624 657 DBREF 4DK3 D 696 762 UNP Q95W15 Q95W15_9TRYP 696 762 SEQADV 4DK3 GLY C 692 UNP Q95W15 LINKER SEQADV 4DK3 ALA C 693 UNP Q95W15 LINKER SEQADV 4DK3 SER C 694 UNP Q95W15 LINKER SEQADV 4DK3 GLY C 695 UNP Q95W15 LINKER SEQADV 4DK3 GLY D 692 UNP Q95W15 LINKER SEQADV 4DK3 ALA D 693 UNP Q95W15 LINKER SEQADV 4DK3 SER D 694 UNP Q95W15 LINKER SEQADV 4DK3 GLY D 695 UNP Q95W15 LINKER SEQRES 1 A 133 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 133 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 133 ARG THR SER SER LEU TYR SER MET GLY TRP PHE ARG GLN SEQRES 4 A 133 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA ILE SER SEQRES 5 A 133 ARG ASN GLY ALA ASN THR TYR TYR THR ASP SER VAL LYS SEQRES 6 A 133 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 A 133 VAL GLU LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 A 133 ALA VAL TYR TYR CYS ALA ALA ASP ARG PHE PRO THR MET SEQRES 9 A 133 GLU VAL VAL THR ILE MET THR ASN GLU TYR ASP TYR TRP SEQRES 10 A 133 GLY GLN GLY THR GLN VAL THR VAL SER SER HIS HIS HIS SEQRES 11 A 133 HIS HIS HIS SEQRES 1 B 133 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 133 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 133 ARG THR SER SER LEU TYR SER MET GLY TRP PHE ARG GLN SEQRES 4 B 133 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA ILE SER SEQRES 5 B 133 ARG ASN GLY ALA ASN THR TYR TYR THR ASP SER VAL LYS SEQRES 6 B 133 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 133 VAL GLU LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 B 133 ALA VAL TYR TYR CYS ALA ALA ASP ARG PHE PRO THR MET SEQRES 9 B 133 GLU VAL VAL THR ILE MET THR ASN GLU TYR ASP TYR TRP SEQRES 10 B 133 GLY GLN GLY THR GLN VAL THR VAL SER SER HIS HIS HIS SEQRES 11 B 133 HIS HIS HIS SEQRES 1 C 105 ARG ALA GLY SER ASN ALA LEU MET ILE GLY ARG ILE ALA SEQRES 2 C 105 ASP VAL GLN HIS GLY PHE LEU GLY ALA MET THR VAL THR SEQRES 3 C 105 GLN TYR VAL LEU GLU VAL ASP GLY GLY ALA SER GLY GLU SEQRES 4 C 105 LYS GLU PHE ILE VAL ILE ARG CYS MET GLY ASP ASN PHE SEQRES 5 C 105 PRO ALA SER LEU LEU LYS ASP GLN VAL LYS LEU GLY SER SEQRES 6 C 105 ARG VAL LEU VAL GLN GLY THR LEU ARG MET ASN ARG HIS SEQRES 7 C 105 VAL ASP ASP VAL SER LYS ARG LEU HIS ALA TYR PRO PHE SEQRES 8 C 105 ILE GLN VAL VAL PRO PRO LEU GLY TYR VAL LYS VAL VAL SEQRES 9 C 105 GLY SEQRES 1 D 105 ARG ALA GLY SER ASN ALA LEU MET ILE GLY ARG ILE ALA SEQRES 2 D 105 ASP VAL GLN HIS GLY PHE LEU GLY ALA MET THR VAL THR SEQRES 3 D 105 GLN TYR VAL LEU GLU VAL ASP GLY GLY ALA SER GLY GLU SEQRES 4 D 105 LYS GLU PHE ILE VAL ILE ARG CYS MET GLY ASP ASN PHE SEQRES 5 D 105 PRO ALA SER LEU LEU LYS ASP GLN VAL LYS LEU GLY SER SEQRES 6 D 105 ARG VAL LEU VAL GLN GLY THR LEU ARG MET ASN ARG HIS SEQRES 7 D 105 VAL ASP ASP VAL SER LYS ARG LEU HIS ALA TYR PRO PHE SEQRES 8 D 105 ILE GLN VAL VAL PRO PRO LEU GLY TYR VAL LYS VAL VAL SEQRES 9 D 105 GLY HELIX 1 1 THR A 28 LEU A 31 5 4 HELIX 2 2 ASP A 62 LYS A 65 5 4 HELIX 3 3 LYS A 87 THR A 91 5 5 HELIX 4 4 MET A 110 TYR A 114 5 5 HELIX 5 5 THR B 28 LEU B 31 5 4 HELIX 6 6 LYS B 87 THR B 91 5 5 HELIX 7 7 MET B 110 TYR B 114 5 5 SHEET 1 A 4 VAL A 2 SER A 7 0 SHEET 2 A 4 LEU A 18 GLY A 26 -1 O ALA A 23 N GLN A 5 SHEET 3 A 4 THR A 78 MET A 83 -1 O VAL A 79 N CYS A 22 SHEET 4 A 4 PHE A 68 ASP A 73 -1 N THR A 69 O GLN A 82 SHEET 1 B 6 GLY A 10 GLN A 13 0 SHEET 2 B 6 THR A 121 SER A 126 1 O THR A 124 N GLY A 10 SHEET 3 B 6 ALA A 92 ALA A 98 -1 N TYR A 94 O THR A 121 SHEET 4 B 6 MET A 34 GLN A 39 -1 N PHE A 37 O TYR A 95 SHEET 5 B 6 GLU A 46 ILE A 51 -1 O ALA A 49 N TRP A 36 SHEET 6 B 6 THR A 58 TYR A 60 -1 O TYR A 59 N ALA A 50 SHEET 1 C 4 GLY A 10 GLN A 13 0 SHEET 2 C 4 THR A 121 SER A 126 1 O THR A 124 N GLY A 10 SHEET 3 C 4 ALA A 92 ALA A 98 -1 N TYR A 94 O THR A 121 SHEET 4 C 4 TYR A 116 TRP A 117 -1 O TYR A 116 N ALA A 98 SHEET 1 D 7 VAL A 107 THR A 108 0 SHEET 2 D 7 ASN C 628 PHE C 642 -1 O PHE C 642 N VAL A 107 SHEET 3 D 7 THR C 647 GLU C 654 -1 O VAL C 652 N ALA C 636 SHEET 4 D 7 PHE C 699 CYS C 704 -1 O ILE C 702 N TYR C 651 SHEET 5 D 7 PHE C 748 VAL C 751 1 O ILE C 749 N ARG C 703 SHEET 6 D 7 ARG C 723 ARG C 731 -1 N THR C 729 O GLN C 750 SHEET 7 D 7 TYR C 757 VAL C 760 -1 O LYS C 759 N LEU C 725 SHEET 1 E 9 TYR C 757 VAL C 760 0 SHEET 2 E 9 ARG C 723 ARG C 731 -1 N LEU C 725 O LYS C 759 SHEET 3 E 9 ASN C 628 PHE C 642 -1 N MET C 631 O VAL C 726 SHEET 4 E 9 ASN D 628 PHE D 642 -1 O ASN D 628 N LEU C 630 SHEET 5 E 9 THR D 647 GLU D 654 -1 O VAL D 652 N ALA D 636 SHEET 6 E 9 PHE D 699 CYS D 704 -1 O CYS D 704 N THR D 649 SHEET 7 E 9 PHE D 748 VAL D 752 1 O VAL D 751 N ARG D 703 SHEET 8 E 9 ARG D 723 ARG D 731 -1 N THR D 729 O GLN D 750 SHEET 9 E 9 GLY D 756 GLY D 762 -1 O LYS D 759 N LEU D 725 SHEET 1 F 5 GLY D 756 GLY D 762 0 SHEET 2 F 5 ARG D 723 ARG D 731 -1 N LEU D 725 O LYS D 759 SHEET 3 F 5 ASN D 628 PHE D 642 -1 N MET D 631 O VAL D 726 SHEET 4 F 5 ASN C 628 PHE C 642 -1 N LEU C 630 O ASN D 628 SHEET 5 F 5 VAL A 107 THR A 108 -1 N VAL A 107 O PHE C 642 SHEET 1 G 4 VAL B 2 SER B 7 0 SHEET 2 G 4 LEU B 18 GLY B 26 -1 O SER B 21 N SER B 7 SHEET 3 G 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 G 4 PHE B 68 ASP B 73 -1 N SER B 71 O GLU B 80 SHEET 1 H 6 GLY B 10 VAL B 12 0 SHEET 2 H 6 THR B 121 VAL B 125 1 O THR B 124 N GLY B 10 SHEET 3 H 6 ALA B 92 ALA B 98 -1 N TYR B 94 O THR B 121 SHEET 4 H 6 MET B 34 GLN B 39 -1 N PHE B 37 O TYR B 95 SHEET 5 H 6 GLU B 46 ILE B 51 -1 O ALA B 49 N TRP B 36 SHEET 6 H 6 THR B 58 TYR B 60 -1 O TYR B 59 N ALA B 50 SHEET 1 I 4 GLY B 10 VAL B 12 0 SHEET 2 I 4 THR B 121 VAL B 125 1 O THR B 124 N GLY B 10 SHEET 3 I 4 ALA B 92 ALA B 98 -1 N TYR B 94 O THR B 121 SHEET 4 I 4 TYR B 116 TRP B 117 -1 O TYR B 116 N ALA B 98 SHEET 1 J 2 ARG C 734 VAL C 736 0 SHEET 2 J 2 LEU C 743 ALA C 745 -1 O HIS C 744 N HIS C 735 SHEET 1 K 2 ARG D 734 HIS D 735 0 SHEET 2 K 2 HIS D 744 ALA D 745 -1 O HIS D 744 N HIS D 735 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.05 SSBOND 2 CYS B 22 CYS B 96 1555 1555 2.04 CRYST1 95.790 105.310 94.032 90.00 90.00 90.00 C 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010440 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009496 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010635 0.00000