HEADER TRANSCRIPTION/PEPTIDE/AGONIST 03-FEB-12 4DK8 TITLE CRYSTAL STRUCTURE OF LXR LIGAND BINDING DOMAIN IN COMPLEX WITH PARTIAL TITLE 2 AGONIST 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXYSTEROLS RECEPTOR LXR-BETA; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 218-460; COMPND 5 SYNONYM: LIVER X RECEPTOR BETA, NUCLEAR RECEPTOR NER, NUCLEAR COMPND 6 RECEPTOR SUBFAMILY 1 GROUP H MEMBER 2, UBIQUITOUSLY-EXPRESSED NUCLEAR COMPND 7 RECEPTOR; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1; COMPND 11 CHAIN: B, D; COMPND 12 FRAGMENT: UNP RESIDUES 745-756; COMPND 13 SYNONYM: NCOA-1, CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 74, BHLHE74, COMPND 14 PROTEIN HIN-2, RIP160, RENAL CARCINOMA ANTIGEN NY-REN-52, STEROID COMPND 15 RECEPTOR COACTIVATOR 1, SRC-1; COMPND 16 EC: 2.3.1.48; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1H2, LXRB, NER, UNR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS LIGAND BINDING DOMAIN, NUCLEAR HORMONE RECEPTOR, TRANSCRIPTION- KEYWDS 2 PEPTIDE-AGONIST COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.E.PIPER,D.J.KOPECKY,H.XU REVDAT 3 28-FEB-24 4DK8 1 REMARK SEQADV LINK REVDAT 2 09-MAY-12 4DK8 1 JRNL REVDAT 1 21-MAR-12 4DK8 0 JRNL AUTH D.J.KOPECKY,X.Y.JIAO,B.FISHER,S.MCKENDRY,M.LABELLE, JRNL AUTH 2 D.E.PIPER,P.COWARD,A.K.SHIAU,P.ESCARON,J.DANAO,A.CHAI, JRNL AUTH 3 J.JAEN,F.KAYSER JRNL TITL DISCOVERY OF A NEW BINDING MODE FOR A SERIES OF LIVER X JRNL TITL 2 RECEPTOR AGONISTS. JRNL REF BIOORG.MED.CHEM.LETT. V. 22 2407 2012 JRNL REFN ISSN 0960-894X JRNL PMID 22406115 JRNL DOI 10.1016/J.BMCL.2012.02.028 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1076 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3991 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.990 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DK8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070433. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-01 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21100 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.91200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, 12% PEG 10000, 0.2 M REMARK 280 CALCIUM ACETATE, 0.005 M DTT, PH 8, VAPOR DIFFUSION, TEMPERATURE REMARK 280 293K, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.22500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.07250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.07250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 148.83750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.07250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.07250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.61250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.07250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.07250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 148.83750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.07250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.07250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.61250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 99.22500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 505 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 506 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 215 REMARK 465 SER A 216 REMARK 465 HIS A 217 REMARK 465 ASP A 245 REMARK 465 GLN A 246 REMARK 465 PRO A 247 REMARK 465 LEU A 254 REMARK 465 GLY A 255 REMARK 465 ALA A 256 REMARK 465 ASP A 257 REMARK 465 PRO A 258 REMARK 465 VAL A 459 REMARK 465 HIS A 460 REMARK 465 GLU A 461 REMARK 465 GLY C 215 REMARK 465 SER C 216 REMARK 465 HIS C 217 REMARK 465 MET C 218 REMARK 465 SER C 242 REMARK 465 PHE C 243 REMARK 465 SER C 244 REMARK 465 ASP C 245 REMARK 465 GLN C 246 REMARK 465 GLY C 255 REMARK 465 ALA C 256 REMARK 465 ASP C 257 REMARK 465 PRO C 258 REMARK 465 GLN C 259 REMARK 465 SER C 260 REMARK 465 ARG C 261 REMARK 465 HIS C 460 REMARK 465 GLU C 461 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 250 106.29 -42.87 REMARK 500 PHE A 329 -44.80 -130.01 REMARK 500 LEU A 330 -93.13 -79.29 REMARK 500 LYS A 331 -44.56 -145.95 REMARK 500 ARG A 342 -8.02 -59.53 REMARK 500 PHE A 379 45.22 -81.56 REMARK 500 ASN A 385 5.27 83.62 REMARK 500 ARG A 411 66.81 -157.10 REMARK 500 GLN A 415 0.62 -59.87 REMARK 500 LEU A 444 -13.09 -48.19 REMARK 500 HIS B 366 70.98 51.13 REMARK 500 ALA C 233 -70.65 -49.12 REMARK 500 GLN C 237 -5.52 -58.23 REMARK 500 LYS C 331 -21.56 -159.06 REMARK 500 ARG C 411 73.34 -156.45 REMARK 500 ASP C 446 95.95 46.46 REMARK 500 LYS C 447 117.52 -173.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 325 OE1 REMARK 620 2 GLU A 325 OE2 49.9 REMARK 620 3 ACT A 502 O 113.8 79.0 REMARK 620 4 ACT A 502 OXT 84.7 79.5 41.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 334 O REMARK 620 2 THR C 334 OG1 66.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0KT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0KT C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DK7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LXR LIGAND BINDING DOMAIN IN COMPLEX WITH FULL REMARK 900 AGONIST 1 DBREF 4DK8 A 219 461 UNP P55055 NR1H2_HUMAN 218 460 DBREF 4DK8 B 365 376 UNP Q15788 NCOA1_HUMAN 745 756 DBREF 4DK8 C 219 461 UNP P55055 NR1H2_HUMAN 218 460 DBREF 4DK8 D 365 376 UNP Q15788 NCOA1_HUMAN 745 756 SEQADV 4DK8 GLY A 215 UNP P55055 EXPRESSION TAG SEQADV 4DK8 SER A 216 UNP P55055 EXPRESSION TAG SEQADV 4DK8 HIS A 217 UNP P55055 EXPRESSION TAG SEQADV 4DK8 MET A 218 UNP P55055 EXPRESSION TAG SEQADV 4DK8 GLY C 215 UNP P55055 EXPRESSION TAG SEQADV 4DK8 SER C 216 UNP P55055 EXPRESSION TAG SEQADV 4DK8 HIS C 217 UNP P55055 EXPRESSION TAG SEQADV 4DK8 MET C 218 UNP P55055 EXPRESSION TAG SEQRES 1 A 247 GLY SER HIS MET GLN LEU THR ALA ALA GLN GLU LEU MET SEQRES 2 A 247 ILE GLN GLN LEU VAL ALA ALA GLN LEU GLN CYS ASN LYS SEQRES 3 A 247 ARG SER PHE SER ASP GLN PRO LYS VAL THR PRO TRP PRO SEQRES 4 A 247 LEU GLY ALA ASP PRO GLN SER ARG ASP ALA ARG GLN GLN SEQRES 5 A 247 ARG PHE ALA HIS PHE THR GLU LEU ALA ILE ILE SER VAL SEQRES 6 A 247 GLN GLU ILE VAL ASP PHE ALA LYS GLN VAL PRO GLY PHE SEQRES 7 A 247 LEU GLN LEU GLY ARG GLU ASP GLN ILE ALA LEU LEU LYS SEQRES 8 A 247 ALA SER THR ILE GLU ILE MET LEU LEU GLU THR ALA ARG SEQRES 9 A 247 ARG TYR ASN HIS GLU THR GLU CYS ILE THR PHE LEU LYS SEQRES 10 A 247 ASP PHE THR TYR SER LYS ASP ASP PHE HIS ARG ALA GLY SEQRES 11 A 247 LEU GLN VAL GLU PHE ILE ASN PRO ILE PHE GLU PHE SER SEQRES 12 A 247 ARG ALA MET ARG ARG LEU GLY LEU ASP ASP ALA GLU TYR SEQRES 13 A 247 ALA LEU LEU ILE ALA ILE ASN ILE PHE SER ALA ASP ARG SEQRES 14 A 247 PRO ASN VAL GLN GLU PRO GLY ARG VAL GLU ALA LEU GLN SEQRES 15 A 247 GLN PRO TYR VAL GLU ALA LEU LEU SER TYR THR ARG ILE SEQRES 16 A 247 LYS ARG PRO GLN ASP GLN LEU ARG PHE PRO ARG MET LEU SEQRES 17 A 247 MET LYS LEU VAL SER LEU ARG THR LEU SER SER VAL HIS SEQRES 18 A 247 SER GLU GLN VAL PHE ALA LEU ARG LEU GLN ASP LYS LYS SEQRES 19 A 247 LEU PRO PRO LEU LEU SER GLU ILE TRP ASP VAL HIS GLU SEQRES 1 B 12 ASP HIS GLN LEU LEU ARG TYR LEU LEU ASP LYS ASP SEQRES 1 C 247 GLY SER HIS MET GLN LEU THR ALA ALA GLN GLU LEU MET SEQRES 2 C 247 ILE GLN GLN LEU VAL ALA ALA GLN LEU GLN CYS ASN LYS SEQRES 3 C 247 ARG SER PHE SER ASP GLN PRO LYS VAL THR PRO TRP PRO SEQRES 4 C 247 LEU GLY ALA ASP PRO GLN SER ARG ASP ALA ARG GLN GLN SEQRES 5 C 247 ARG PHE ALA HIS PHE THR GLU LEU ALA ILE ILE SER VAL SEQRES 6 C 247 GLN GLU ILE VAL ASP PHE ALA LYS GLN VAL PRO GLY PHE SEQRES 7 C 247 LEU GLN LEU GLY ARG GLU ASP GLN ILE ALA LEU LEU LYS SEQRES 8 C 247 ALA SER THR ILE GLU ILE MET LEU LEU GLU THR ALA ARG SEQRES 9 C 247 ARG TYR ASN HIS GLU THR GLU CYS ILE THR PHE LEU LYS SEQRES 10 C 247 ASP PHE THR TYR SER LYS ASP ASP PHE HIS ARG ALA GLY SEQRES 11 C 247 LEU GLN VAL GLU PHE ILE ASN PRO ILE PHE GLU PHE SER SEQRES 12 C 247 ARG ALA MET ARG ARG LEU GLY LEU ASP ASP ALA GLU TYR SEQRES 13 C 247 ALA LEU LEU ILE ALA ILE ASN ILE PHE SER ALA ASP ARG SEQRES 14 C 247 PRO ASN VAL GLN GLU PRO GLY ARG VAL GLU ALA LEU GLN SEQRES 15 C 247 GLN PRO TYR VAL GLU ALA LEU LEU SER TYR THR ARG ILE SEQRES 16 C 247 LYS ARG PRO GLN ASP GLN LEU ARG PHE PRO ARG MET LEU SEQRES 17 C 247 MET LYS LEU VAL SER LEU ARG THR LEU SER SER VAL HIS SEQRES 18 C 247 SER GLU GLN VAL PHE ALA LEU ARG LEU GLN ASP LYS LYS SEQRES 19 C 247 LEU PRO PRO LEU LEU SER GLU ILE TRP ASP VAL HIS GLU SEQRES 1 D 12 ASP HIS GLN LEU LEU ARG TYR LEU LEU ASP LYS ASP HET 0KT A 501 32 HET ACT A 502 4 HET CA A 503 1 HET CA A 504 1 HET CA A 505 1 HET CA A 506 1 HET 0KT C 501 32 HET CA C 502 1 HET CA C 503 1 HETNAM 0KT N-METHYL-N-(4-{(1S)-2,2,2-TRIFLUORO-1-HYDROXY-1-[1-(2- HETNAM 2 0KT METHOXYETHYL)-1H-PYRROL-2-YL]ETHYL}PHENYL) HETNAM 3 0KT BENZENESULFONAMIDE HETNAM ACT ACETATE ION HETNAM CA CALCIUM ION FORMUL 5 0KT 2(C22 H23 F3 N2 O4 S) FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 CA 6(CA 2+) FORMUL 14 HOH *16(H2 O) HELIX 1 1 THR A 221 SER A 242 1 22 HELIX 2 2 ARG A 261 GLN A 288 1 28 HELIX 3 3 GLY A 291 LEU A 295 5 5 HELIX 4 4 GLY A 296 ARG A 319 1 24 HELIX 5 5 SER A 336 ALA A 343 1 8 HELIX 6 6 GLN A 346 LEU A 363 1 18 HELIX 7 7 ASP A 366 PHE A 379 1 14 HELIX 8 8 GLU A 388 ARG A 411 1 24 HELIX 9 9 LEU A 416 LEU A 444 1 29 HELIX 10 10 PRO A 450 ASP A 458 1 9 HELIX 11 11 HIS B 366 LYS B 375 1 10 HELIX 12 12 THR C 221 CYS C 238 1 18 HELIX 13 13 ARG C 264 VAL C 289 1 26 HELIX 14 14 GLY C 291 LEU C 295 5 5 HELIX 15 15 GLY C 296 ARG C 319 1 24 HELIX 16 16 ASP C 338 ALA C 343 1 6 HELIX 17 17 GLN C 346 ARG C 362 1 17 HELIX 18 18 ASP C 366 PHE C 379 1 14 HELIX 19 19 GLU C 388 ARG C 411 1 24 HELIX 20 20 LEU C 416 GLN C 445 1 30 HELIX 21 21 PRO C 450 ASP C 458 1 9 HELIX 22 22 HIS D 366 LYS D 375 1 10 SHEET 1 A 3 TYR A 320 ASN A 321 0 SHEET 2 A 3 CYS A 326 THR A 328 -1 O CYS A 326 N ASN A 321 SHEET 3 A 3 THR A 334 TYR A 335 -1 O TYR A 335 N ILE A 327 SHEET 1 B 3 TYR C 320 ASN C 321 0 SHEET 2 B 3 CYS C 326 THR C 328 -1 O CYS C 326 N ASN C 321 SHEET 3 B 3 THR C 334 SER C 336 -1 O TYR C 335 N ILE C 327 LINK OE1 GLN A 235 CA CA A 503 1555 1555 3.09 LINK OE1 GLU A 325 CA CA A 505 1555 1555 2.61 LINK OE2 GLU A 325 CA CA A 505 1555 1555 2.66 LINK OD2 ASP A 339 CA CA A 504 1555 1555 2.92 LINK O ACT A 502 CA CA A 505 1555 1555 3.03 LINK OXT ACT A 502 CA CA A 505 1555 1555 3.07 LINK O THR C 334 CA CA C 503 1555 1555 2.86 LINK OG1 THR C 334 CA CA C 503 1555 1555 2.91 SITE 1 AC1 14 PHE A 271 SER A 278 MET A 312 LEU A 313 SITE 2 AC1 14 THR A 316 PHE A 329 PHE A 340 ALA A 343 SITE 3 AC1 14 ILE A 353 HIS A 435 LEU A 442 LEU A 449 SITE 4 AC1 14 LEU A 453 TRP A 457 SITE 1 AC2 3 GLU A 325 ARG A 358 CA A 505 SITE 1 AC3 3 GLN A 235 GLU A 281 GLU A 315 SITE 1 AC4 4 THR A 334 ASP A 338 ASP A 339 ARG A 342 SITE 1 AC5 2 GLU A 325 ACT A 502 SITE 1 AC6 9 PHE C 271 LEU C 274 LEU C 313 THR C 316 SITE 2 AC6 9 PHE C 329 ALA C 343 LEU C 345 ILE C 353 SITE 3 AC6 9 HIS C 435 SITE 1 AC7 2 ASN C 239 GLU C 315 SITE 1 AC8 1 THR C 334 CRYST1 88.145 88.145 198.450 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011345 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005039 0.00000