data_4DKS # _entry.id 4DKS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.321 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4DKS RCSB RCSB070453 WWPDB D_1000070453 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3VCF _pdbx_database_related.details re-cloned _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4DKS _pdbx_database_status.recvd_initial_deposition_date 2012-02-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ouyang, S.' 1 'Liang, W.' 2 'Huang, L.' 3 'Liu, Z.-J.' 4 # _citation.id primary _citation.title 'Structural and functional characterization of the C-terminal catalytic domain of SSV1 integrase.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 68 _citation.page_first 659 _citation.page_last 670 _citation.year 2012 _citation.journal_id_ASTM ABCRE6 _citation.country US _citation.journal_id_ISSN 1399-0047 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22683788 _citation.pdbx_database_id_DOI 10.1107/S0907444912007202 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhan, Z.' 1 ? primary 'Ouyang, S.' 2 ? primary 'Liang, W.' 3 ? primary 'Zhang, Z.' 4 ? primary 'Liu, Z.J.' 5 ? primary 'Huang, L.' 6 ? # _cell.entry_id 4DKS _cell.length_a 75.224 _cell.length_b 75.224 _cell.length_c 96.091 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4DKS _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable integrase' 19122.312 1 ? ? ? ? 2 water nat water 18.015 67 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ADIYIPTLEEIKRTLQLAKDYSENVYFIYRIALESGVRLSEILKVLKEPERDICGNDVCYYPLSWTRGYKGVFYVFHITP LKRVEVTKWAIADFERRHKDAIAIKYFRKFVASKMAELSVPLDIIDFIQGRKPTRVLTQHYVSLFGIAKEQYKKYAEWLK GV ; _entity_poly.pdbx_seq_one_letter_code_can ;ADIYIPTLEEIKRTLQLAKDYSENVYFIYRIALESGVRLSEILKVLKEPERDICGNDVCYYPLSWTRGYKGVFYVFHITP LKRVEVTKWAIADFERRHKDAIAIKYFRKFVASKMAELSVPLDIIDFIQGRKPTRVLTQHYVSLFGIAKEQYKKYAEWLK GV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ASP n 1 3 ILE n 1 4 TYR n 1 5 ILE n 1 6 PRO n 1 7 THR n 1 8 LEU n 1 9 GLU n 1 10 GLU n 1 11 ILE n 1 12 LYS n 1 13 ARG n 1 14 THR n 1 15 LEU n 1 16 GLN n 1 17 LEU n 1 18 ALA n 1 19 LYS n 1 20 ASP n 1 21 TYR n 1 22 SER n 1 23 GLU n 1 24 ASN n 1 25 VAL n 1 26 TYR n 1 27 PHE n 1 28 ILE n 1 29 TYR n 1 30 ARG n 1 31 ILE n 1 32 ALA n 1 33 LEU n 1 34 GLU n 1 35 SER n 1 36 GLY n 1 37 VAL n 1 38 ARG n 1 39 LEU n 1 40 SER n 1 41 GLU n 1 42 ILE n 1 43 LEU n 1 44 LYS n 1 45 VAL n 1 46 LEU n 1 47 LYS n 1 48 GLU n 1 49 PRO n 1 50 GLU n 1 51 ARG n 1 52 ASP n 1 53 ILE n 1 54 CYS n 1 55 GLY n 1 56 ASN n 1 57 ASP n 1 58 VAL n 1 59 CYS n 1 60 TYR n 1 61 TYR n 1 62 PRO n 1 63 LEU n 1 64 SER n 1 65 TRP n 1 66 THR n 1 67 ARG n 1 68 GLY n 1 69 TYR n 1 70 LYS n 1 71 GLY n 1 72 VAL n 1 73 PHE n 1 74 TYR n 1 75 VAL n 1 76 PHE n 1 77 HIS n 1 78 ILE n 1 79 THR n 1 80 PRO n 1 81 LEU n 1 82 LYS n 1 83 ARG n 1 84 VAL n 1 85 GLU n 1 86 VAL n 1 87 THR n 1 88 LYS n 1 89 TRP n 1 90 ALA n 1 91 ILE n 1 92 ALA n 1 93 ASP n 1 94 PHE n 1 95 GLU n 1 96 ARG n 1 97 ARG n 1 98 HIS n 1 99 LYS n 1 100 ASP n 1 101 ALA n 1 102 ILE n 1 103 ALA n 1 104 ILE n 1 105 LYS n 1 106 TYR n 1 107 PHE n 1 108 ARG n 1 109 LYS n 1 110 PHE n 1 111 VAL n 1 112 ALA n 1 113 SER n 1 114 LYS n 1 115 MET n 1 116 ALA n 1 117 GLU n 1 118 LEU n 1 119 SER n 1 120 VAL n 1 121 PRO n 1 122 LEU n 1 123 ASP n 1 124 ILE n 1 125 ILE n 1 126 ASP n 1 127 PHE n 1 128 ILE n 1 129 GLN n 1 130 GLY n 1 131 ARG n 1 132 LYS n 1 133 PRO n 1 134 THR n 1 135 ARG n 1 136 VAL n 1 137 LEU n 1 138 THR n 1 139 GLN n 1 140 HIS n 1 141 TYR n 1 142 VAL n 1 143 SER n 1 144 LEU n 1 145 PHE n 1 146 GLY n 1 147 ILE n 1 148 ALA n 1 149 LYS n 1 150 GLU n 1 151 GLN n 1 152 TYR n 1 153 LYS n 1 154 LYS n 1 155 TYR n 1 156 ALA n 1 157 GLU n 1 158 TRP n 1 159 LEU n 1 160 LYS n 1 161 GLY n 1 162 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene d335 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 244589 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET30a(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code INTG_SSV1 _struct_ref.pdbx_db_accession P20214 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ADIYIPTLEEIKRTLQLAKDYSENVYFIYRIALESGVRLSEILKVLKEPERDICGNDVCYYPLSWTRGYKGVFYVFHITP LKRVEVTKWAIADFERRHKDAIAIKYFRKFVASKMAELSVPLDIIDFIQGRKPTRVLTQHYVSLFGIAKEQYKKYAEWLK GV ; _struct_ref.pdbx_align_begin 174 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4DKS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 162 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P20214 _struct_ref_seq.db_align_beg 174 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 335 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 174 _struct_ref_seq.pdbx_auth_seq_align_end 335 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4DKS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.55 _exptl_crystal.density_percent_sol 65.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.2M NaCl or MgCl2, 0.1M HEPES, 25%(w/v) polyethylene glycol 3350, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-10-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9794 # _reflns.entry_id 4DKS _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.7 _reflns.number_obs 8010 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 56.100 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4DKS _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.7000 _refine.ls_d_res_low 40.4910 _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.7500 _refine.ls_number_reflns_obs 8010 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2051 _refine.ls_R_factor_R_work 0.2026 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2609 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.7200 _refine.ls_number_reflns_R_free 378 _refine.ls_number_reflns_R_work 7632 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 54.3656 _refine.solvent_model_param_bsol 38.0160 _refine.solvent_model_param_ksol 0.3190 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.0839 _refine.aniso_B[2][2] -1.0839 _refine.aniso_B[3][3] 2.1678 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2800 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.3000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 1.1100 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8452 _refine.B_iso_max 108.290 _refine.B_iso_min 29.430 _refine.pdbx_overall_phase_error 21.2300 _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_diffrn_id 1 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1199 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 1266 _refine_hist.d_res_high 2.7000 _refine_hist.d_res_low 40.4910 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 1226 0.009 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1648 1.072 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 181 0.073 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 202 0.006 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 459 15.769 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs 2.7000 3.0906 3 100.0000 2459 . 0.2289 0.2763 . 129 . 2588 . 'X-RAY DIFFRACTION' . 3.0906 3.8934 3 100.0000 2502 . 0.1836 0.2739 . 132 . 2634 . 'X-RAY DIFFRACTION' . 3.8934 40.4958 3 100.0000 2671 . 0.2059 0.2486 . 117 . 2788 . 'X-RAY DIFFRACTION' . # _struct.entry_id 4DKS _struct.title 'A spindle-shaped virus protein (chymotrypsin treated)' _struct.pdbx_descriptor 'Probable integrase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DKS _struct_keywords.pdbx_keywords RECOMBINATION _struct_keywords.text ;Catalytic domain, Integrase, The C174 domain of SSV1 Int, seven-helices, three-stranded antiparallel-sheet', RECOMBINATION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 7 ? SER A 22 ? THR A 180 SER A 195 1 ? 16 HELX_P HELX_P2 2 SER A 22 ? GLY A 36 ? SER A 195 GLY A 209 1 ? 15 HELX_P HELX_P3 3 ARG A 38 ? LEU A 46 ? ARG A 211 LEU A 219 1 ? 9 HELX_P HELX_P4 4 GLU A 48 ? ASP A 52 ? GLU A 221 ASP A 225 5 ? 5 HELX_P HELX_P5 5 THR A 87 ? ARG A 97 ? THR A 260 ARG A 270 1 ? 11 HELX_P HELX_P6 6 ALA A 103 ? LYS A 105 ? ALA A 276 LYS A 278 5 ? 3 HELX_P HELX_P7 7 TYR A 106 ? LEU A 118 ? TYR A 279 LEU A 291 1 ? 13 HELX_P HELX_P8 8 PRO A 121 ? GLN A 129 ? PRO A 294 GLN A 302 1 ? 9 HELX_P HELX_P9 9 SER A 143 ? GLY A 161 ? SER A 316 GLY A 334 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 54 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 59 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 227 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 232 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.067 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 53 ? CYS A 54 ? ILE A 226 CYS A 227 A 2 CYS A 59 ? PRO A 62 ? CYS A 232 PRO A 235 A 3 TYR A 74 ? HIS A 77 ? TYR A 247 HIS A 250 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 53 ? N ILE A 226 O TYR A 60 ? O TYR A 233 A 2 3 N CYS A 59 ? N CYS A 232 O HIS A 77 ? O HIS A 250 # _database_PDB_matrix.entry_id 4DKS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4DKS _atom_sites.fract_transf_matrix[1][1] 0.013294 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013294 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010407 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 174 174 ALA ALA A . n A 1 2 ASP 2 175 175 ASP ASP A . n A 1 3 ILE 3 176 176 ILE ILE A . n A 1 4 TYR 4 177 177 TYR TYR A . n A 1 5 ILE 5 178 178 ILE ILE A . n A 1 6 PRO 6 179 179 PRO PRO A . n A 1 7 THR 7 180 180 THR THR A . n A 1 8 LEU 8 181 181 LEU LEU A . n A 1 9 GLU 9 182 182 GLU GLU A . n A 1 10 GLU 10 183 183 GLU GLU A . n A 1 11 ILE 11 184 184 ILE ILE A . n A 1 12 LYS 12 185 185 LYS LYS A . n A 1 13 ARG 13 186 186 ARG ARG A . n A 1 14 THR 14 187 187 THR THR A . n A 1 15 LEU 15 188 188 LEU LEU A . n A 1 16 GLN 16 189 189 GLN GLN A . n A 1 17 LEU 17 190 190 LEU LEU A . n A 1 18 ALA 18 191 191 ALA ALA A . n A 1 19 LYS 19 192 192 LYS LYS A . n A 1 20 ASP 20 193 193 ASP ASP A . n A 1 21 TYR 21 194 194 TYR TYR A . n A 1 22 SER 22 195 195 SER SER A . n A 1 23 GLU 23 196 196 GLU GLU A . n A 1 24 ASN 24 197 197 ASN ASN A . n A 1 25 VAL 25 198 198 VAL VAL A . n A 1 26 TYR 26 199 199 TYR TYR A . n A 1 27 PHE 27 200 200 PHE PHE A . n A 1 28 ILE 28 201 201 ILE ILE A . n A 1 29 TYR 29 202 202 TYR TYR A . n A 1 30 ARG 30 203 203 ARG ARG A . n A 1 31 ILE 31 204 204 ILE ILE A . n A 1 32 ALA 32 205 205 ALA ALA A . n A 1 33 LEU 33 206 206 LEU LEU A . n A 1 34 GLU 34 207 207 GLU GLU A . n A 1 35 SER 35 208 208 SER SER A . n A 1 36 GLY 36 209 209 GLY GLY A . n A 1 37 VAL 37 210 210 VAL VAL A . n A 1 38 ARG 38 211 211 ARG ARG A . n A 1 39 LEU 39 212 212 LEU LEU A . n A 1 40 SER 40 213 213 SER SER A . n A 1 41 GLU 41 214 214 GLU GLU A . n A 1 42 ILE 42 215 215 ILE ILE A . n A 1 43 LEU 43 216 216 LEU LEU A . n A 1 44 LYS 44 217 217 LYS LYS A . n A 1 45 VAL 45 218 218 VAL VAL A . n A 1 46 LEU 46 219 219 LEU LEU A . n A 1 47 LYS 47 220 220 LYS LYS A . n A 1 48 GLU 48 221 221 GLU GLU A . n A 1 49 PRO 49 222 222 PRO PRO A . n A 1 50 GLU 50 223 223 GLU GLU A . n A 1 51 ARG 51 224 224 ARG ARG A . n A 1 52 ASP 52 225 225 ASP ASP A . n A 1 53 ILE 53 226 226 ILE ILE A . n A 1 54 CYS 54 227 227 CYS CYS A . n A 1 55 GLY 55 228 228 GLY GLY A . n A 1 56 ASN 56 229 229 ASN ASN A . n A 1 57 ASP 57 230 230 ASP ASP A . n A 1 58 VAL 58 231 231 VAL VAL A . n A 1 59 CYS 59 232 232 CYS CYS A . n A 1 60 TYR 60 233 233 TYR TYR A . n A 1 61 TYR 61 234 234 TYR TYR A . n A 1 62 PRO 62 235 235 PRO PRO A . n A 1 63 LEU 63 236 236 LEU LEU A . n A 1 64 SER 64 237 237 SER SER A . n A 1 65 TRP 65 238 ? ? ? A . n A 1 66 THR 66 239 ? ? ? A . n A 1 67 ARG 67 240 ? ? ? A . n A 1 68 GLY 68 241 ? ? ? A . n A 1 69 TYR 69 242 ? ? ? A . n A 1 70 LYS 70 243 ? ? ? A . n A 1 71 GLY 71 244 244 GLY GLY A . n A 1 72 VAL 72 245 245 VAL VAL A . n A 1 73 PHE 73 246 246 PHE PHE A . n A 1 74 TYR 74 247 247 TYR TYR A . n A 1 75 VAL 75 248 248 VAL VAL A . n A 1 76 PHE 76 249 249 PHE PHE A . n A 1 77 HIS 77 250 250 HIS HIS A . n A 1 78 ILE 78 251 251 ILE ILE A . n A 1 79 THR 79 252 252 THR THR A . n A 1 80 PRO 80 253 253 PRO PRO A . n A 1 81 LEU 81 254 254 LEU LEU A . n A 1 82 LYS 82 255 255 LYS LYS A . n A 1 83 ARG 83 256 256 ARG ARG A . n A 1 84 VAL 84 257 257 VAL VAL A . n A 1 85 GLU 85 258 258 GLU GLU A . n A 1 86 VAL 86 259 259 VAL VAL A . n A 1 87 THR 87 260 260 THR THR A . n A 1 88 LYS 88 261 261 LYS LYS A . n A 1 89 TRP 89 262 262 TRP TRP A . n A 1 90 ALA 90 263 263 ALA ALA A . n A 1 91 ILE 91 264 264 ILE ILE A . n A 1 92 ALA 92 265 265 ALA ALA A . n A 1 93 ASP 93 266 266 ASP ASP A . n A 1 94 PHE 94 267 267 PHE PHE A . n A 1 95 GLU 95 268 268 GLU GLU A . n A 1 96 ARG 96 269 269 ARG ARG A . n A 1 97 ARG 97 270 270 ARG ARG A . n A 1 98 HIS 98 271 271 HIS HIS A . n A 1 99 LYS 99 272 ? ? ? A . n A 1 100 ASP 100 273 ? ? ? A . n A 1 101 ALA 101 274 274 ALA ALA A . n A 1 102 ILE 102 275 275 ILE ILE A . n A 1 103 ALA 103 276 276 ALA ALA A . n A 1 104 ILE 104 277 277 ILE ILE A . n A 1 105 LYS 105 278 278 LYS LYS A . n A 1 106 TYR 106 279 279 TYR TYR A . n A 1 107 PHE 107 280 280 PHE PHE A . n A 1 108 ARG 108 281 281 ARG ARG A . n A 1 109 LYS 109 282 282 LYS LYS A . n A 1 110 PHE 110 283 283 PHE PHE A . n A 1 111 VAL 111 284 284 VAL VAL A . n A 1 112 ALA 112 285 285 ALA ALA A . n A 1 113 SER 113 286 286 SER SER A . n A 1 114 LYS 114 287 287 LYS LYS A . n A 1 115 MET 115 288 288 MET MET A . n A 1 116 ALA 116 289 289 ALA ALA A . n A 1 117 GLU 117 290 290 GLU GLU A . n A 1 118 LEU 118 291 291 LEU LEU A . n A 1 119 SER 119 292 292 SER SER A . n A 1 120 VAL 120 293 293 VAL VAL A . n A 1 121 PRO 121 294 294 PRO PRO A . n A 1 122 LEU 122 295 295 LEU LEU A . n A 1 123 ASP 123 296 296 ASP ASP A . n A 1 124 ILE 124 297 297 ILE ILE A . n A 1 125 ILE 125 298 298 ILE ILE A . n A 1 126 ASP 126 299 299 ASP ASP A . n A 1 127 PHE 127 300 300 PHE PHE A . n A 1 128 ILE 128 301 301 ILE ILE A . n A 1 129 GLN 129 302 302 GLN GLN A . n A 1 130 GLY 130 303 303 GLY GLY A . n A 1 131 ARG 131 304 304 ARG ARG A . n A 1 132 LYS 132 305 305 LYS LYS A . n A 1 133 PRO 133 306 306 PRO PRO A . n A 1 134 THR 134 307 ? ? ? A . n A 1 135 ARG 135 308 ? ? ? A . n A 1 136 VAL 136 309 ? ? ? A . n A 1 137 LEU 137 310 ? ? ? A . n A 1 138 THR 138 311 ? ? ? A . n A 1 139 GLN 139 312 ? ? ? A . n A 1 140 HIS 140 313 ? ? ? A . n A 1 141 TYR 141 314 ? ? ? A . n A 1 142 VAL 142 315 315 VAL VAL A . n A 1 143 SER 143 316 316 SER SER A . n A 1 144 LEU 144 317 317 LEU LEU A . n A 1 145 PHE 145 318 318 PHE PHE A . n A 1 146 GLY 146 319 319 GLY GLY A . n A 1 147 ILE 147 320 320 ILE ILE A . n A 1 148 ALA 148 321 321 ALA ALA A . n A 1 149 LYS 149 322 322 LYS LYS A . n A 1 150 GLU 150 323 323 GLU GLU A . n A 1 151 GLN 151 324 324 GLN GLN A . n A 1 152 TYR 152 325 325 TYR TYR A . n A 1 153 LYS 153 326 326 LYS LYS A . n A 1 154 LYS 154 327 327 LYS LYS A . n A 1 155 TYR 155 328 328 TYR TYR A . n A 1 156 ALA 156 329 329 ALA ALA A . n A 1 157 GLU 157 330 330 GLU GLU A . n A 1 158 TRP 158 331 331 TRP TRP A . n A 1 159 LEU 159 332 332 LEU LEU A . n A 1 160 LYS 160 333 333 LYS LYS A . n A 1 161 GLY 161 334 334 GLY GLY A . n A 1 162 VAL 162 335 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 401 1 HOH HOH A . B 2 HOH 2 402 2 HOH HOH A . B 2 HOH 3 403 3 HOH HOH A . B 2 HOH 4 404 4 HOH HOH A . B 2 HOH 5 405 5 HOH HOH A . B 2 HOH 6 406 7 HOH HOH A . B 2 HOH 7 407 8 HOH HOH A . B 2 HOH 8 408 9 HOH HOH A . B 2 HOH 9 409 10 HOH HOH A . B 2 HOH 10 410 11 HOH HOH A . B 2 HOH 11 411 12 HOH HOH A . B 2 HOH 12 412 13 HOH HOH A . B 2 HOH 13 413 14 HOH HOH A . B 2 HOH 14 414 15 HOH HOH A . B 2 HOH 15 415 16 HOH HOH A . B 2 HOH 16 416 18 HOH HOH A . B 2 HOH 17 417 19 HOH HOH A . B 2 HOH 18 418 22 HOH HOH A . B 2 HOH 19 419 23 HOH HOH A . B 2 HOH 20 420 24 HOH HOH A . B 2 HOH 21 421 25 HOH HOH A . B 2 HOH 22 422 26 HOH HOH A . B 2 HOH 23 423 27 HOH HOH A . B 2 HOH 24 424 28 HOH HOH A . B 2 HOH 25 425 29 HOH HOH A . B 2 HOH 26 426 31 HOH HOH A . B 2 HOH 27 427 32 HOH HOH A . B 2 HOH 28 428 33 HOH HOH A . B 2 HOH 29 429 34 HOH HOH A . B 2 HOH 30 430 35 HOH HOH A . B 2 HOH 31 431 36 HOH HOH A . B 2 HOH 32 432 38 HOH HOH A . B 2 HOH 33 433 39 HOH HOH A . B 2 HOH 34 434 40 HOH HOH A . B 2 HOH 35 435 41 HOH HOH A . B 2 HOH 36 436 42 HOH HOH A . B 2 HOH 37 437 43 HOH HOH A . B 2 HOH 38 438 45 HOH HOH A . B 2 HOH 39 439 46 HOH HOH A . B 2 HOH 40 440 47 HOH HOH A . B 2 HOH 41 441 48 HOH HOH A . B 2 HOH 42 442 49 HOH HOH A . B 2 HOH 43 443 51 HOH HOH A . B 2 HOH 44 444 52 HOH HOH A . B 2 HOH 45 445 53 HOH HOH A . B 2 HOH 46 446 54 HOH HOH A . B 2 HOH 47 447 56 HOH HOH A . B 2 HOH 48 448 57 HOH HOH A . B 2 HOH 49 449 58 HOH HOH A . B 2 HOH 50 450 59 HOH HOH A . B 2 HOH 51 451 60 HOH HOH A . B 2 HOH 52 452 61 HOH HOH A . B 2 HOH 53 453 62 HOH HOH A . B 2 HOH 54 454 63 HOH HOH A . B 2 HOH 55 455 64 HOH HOH A . B 2 HOH 56 456 65 HOH HOH A . B 2 HOH 57 457 66 HOH HOH A . B 2 HOH 58 458 69 HOH HOH A . B 2 HOH 59 459 70 HOH HOH A . B 2 HOH 60 460 71 HOH HOH A . B 2 HOH 61 461 72 HOH HOH A . B 2 HOH 62 462 73 HOH HOH A . B 2 HOH 63 463 74 HOH HOH A . B 2 HOH 64 464 75 HOH HOH A . B 2 HOH 65 465 76 HOH HOH A . B 2 HOH 66 466 77 HOH HOH A . B 2 HOH 67 467 78 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 443 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-30 2 'Structure model' 1 1 2020-01-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_struct_special_symmetry # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_id_CSD' 3 2 'Structure model' '_citation.journal_id_ISSN' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' 6 2 'Structure model' '_citation_author.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASES phasing . ? 2 PHENIX refinement 1.7.3_928 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 4DKS _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE FULL SEQUENCE WHICH WAS PREPARED FOR THE CRYSTLLIZATION IS AS FOLLOWS. MHHHHHHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGS MTKDKTRYKYGDYILRERKGRYYVYKLEYENGEVKERYVGPLADVVESYL KMKLGVVGDTPLQADPPGFEPGTSGSGGGKEGTERRKIALVANLRQYATD GNIKAFYDYLMNERGISEKTAKDYINAISKPYKETRDAQKAYRLFARFLA SRNIIHDEFADKILKAVKVKKANADIYIPTLEEIKRTLQLAKDYSENVYF IYRIALESGVRLSEILKVLKEPERDICGNDVCYYPLSWTRGYKGVFYVFH ITPLKRVEVTKWAIADFERRHKDAIAIKYFRKFVASKMAELSVPLDIIDF IQGRKPTRVLTQHYVSLFGIAKEQYKKYAEWLKGV HOWEVER, THE PROTEIN WAS CRYSTALLIZED BY IN SITU PROTEOLYSIS METHODS (CHYMOTRYPSIN TREATED). THE N-TERMINAL AND SOME LOOPS MISSED IN THE STRUCTURE. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ALA _pdbx_validate_close_contact.auth_seq_id_1 274 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 433 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 175 ? ? -167.84 116.46 2 1 GLU A 221 ? ? -141.35 51.69 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id THR _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 187 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id CG2 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id THR _pdbx_unobs_or_zero_occ_atoms.label_seq_id 14 _pdbx_unobs_or_zero_occ_atoms.label_atom_id CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A TRP 238 ? A TRP 65 2 1 Y 1 A THR 239 ? A THR 66 3 1 Y 1 A ARG 240 ? A ARG 67 4 1 Y 1 A GLY 241 ? A GLY 68 5 1 Y 1 A TYR 242 ? A TYR 69 6 1 Y 1 A LYS 243 ? A LYS 70 7 1 Y 1 A LYS 272 ? A LYS 99 8 1 Y 1 A ASP 273 ? A ASP 100 9 1 Y 1 A THR 307 ? A THR 134 10 1 Y 1 A ARG 308 ? A ARG 135 11 1 Y 1 A VAL 309 ? A VAL 136 12 1 Y 1 A LEU 310 ? A LEU 137 13 1 Y 1 A THR 311 ? A THR 138 14 1 Y 1 A GLN 312 ? A GLN 139 15 1 Y 1 A HIS 313 ? A HIS 140 16 1 Y 1 A TYR 314 ? A TYR 141 17 1 Y 1 A VAL 335 ? A VAL 162 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #