HEADER HYDROLASE 06-FEB-12 4DLM TITLE CRYSTAL STRUCTURE OF AN AMIDOHYDROLASE (COG3618) FROM BURKHOLDERIA TITLE 2 MULTIVORANS (TARGET EFI-500235) WITH BOUND ZN, SPACE GROUP P212121 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMIDOHYDROLASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE AMIDOHYDROLASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA MULTIVORANS; SOURCE 3 ORGANISM_TAXID: 395019; SOURCE 4 STRAIN: ATCC 17616; SOURCE 5 GENE: BMUL_3602, BMULJ_04915; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS AMIDOHYDROLASE, COG3618, ENZYME FUNCTION INITIATIVE, EFI, STRUCTURAL KEYWDS 2 GENOMICS, TIM-BARREL FOLD, PUTATIVE LACTONASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,R.TORO,R.BHOSLE,R.D.SEIDEL,B.HILLERICH,E.WASHINGTON, AUTHOR 2 A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,N.F.AL OBAIDI, AUTHOR 3 W.D.ZENCHECK,H.J.IMKER,J.A.GERLT,F.M.RAUSHEL,S.C.ALMO,ENZYME AUTHOR 4 FUNCTION INITIATIVE (EFI) REVDAT 3 28-FEB-24 4DLM 1 REMARK SEQADV LINK REVDAT 2 31-JAN-18 4DLM 1 AUTHOR JRNL REVDAT 1 29-FEB-12 4DLM 0 JRNL AUTH M.W.VETTING,R.TORO,R.BHOSLE,R.D.SEIDEL,B.HILLERICH, JRNL AUTH 2 E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, JRNL AUTH 3 N.F.AL OBAIDI,W.D.ZENCHECK,H.J.IMKER,J.A.GERLT,F.M.RAUSHEL, JRNL AUTH 4 S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF AN AMIDOHYDROLASE (COG3618) FROM JRNL TITL 2 BURKHOLDERIA MULTIVORANS (TARGET EFI-500235) WITH BOUND ZN, JRNL TITL 3 SPACE GROUP P212121 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 20750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 1087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6664 - 3.8494 0.85 2458 122 0.1830 0.2168 REMARK 3 2 3.8494 - 3.0556 0.89 2418 129 0.1554 0.1816 REMARK 3 3 3.0556 - 2.6693 0.90 2464 132 0.1633 0.2478 REMARK 3 4 2.6693 - 2.4253 0.91 2455 130 0.1733 0.2409 REMARK 3 5 2.4253 - 2.2515 0.92 2444 149 0.1726 0.2378 REMARK 3 6 2.2515 - 2.1187 0.92 2466 150 0.1804 0.2875 REMARK 3 7 2.1187 - 2.0126 0.92 2465 145 0.1973 0.2812 REMARK 3 8 2.0126 - 1.9250 0.93 2493 130 0.2530 0.3274 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 34.75 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.08280 REMARK 3 B22 (A**2) : -0.00280 REMARK 3 B33 (A**2) : 4.08560 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2382 REMARK 3 ANGLE : 1.070 3251 REMARK 3 CHIRALITY : 0.073 339 REMARK 3 PLANARITY : 0.004 426 REMARK 3 DIHEDRAL : 12.853 839 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 3:59) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8173 -3.4843 13.0246 REMARK 3 T TENSOR REMARK 3 T11: 0.1041 T22: 0.1342 REMARK 3 T33: 0.1133 T12: 0.0098 REMARK 3 T13: -0.0256 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 1.0592 L22: 1.1067 REMARK 3 L33: 1.6783 L12: -0.1255 REMARK 3 L13: -0.4217 L23: 0.0761 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: -0.1591 S13: 0.1135 REMARK 3 S21: 0.1067 S22: -0.0076 S23: -0.0211 REMARK 3 S31: -0.0086 S32: 0.1106 S33: -0.0073 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 60:97) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4213 11.5982 7.7665 REMARK 3 T TENSOR REMARK 3 T11: 0.1353 T22: -0.0077 REMARK 3 T33: 0.3569 T12: -0.0702 REMARK 3 T13: -0.0293 T23: -0.1008 REMARK 3 L TENSOR REMARK 3 L11: 1.0625 L22: 0.9918 REMARK 3 L33: 0.9092 L12: -0.5211 REMARK 3 L13: -0.0184 L23: 0.2142 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: -0.1349 S13: 0.6719 REMARK 3 S21: 0.1515 S22: -0.0221 S23: -0.3820 REMARK 3 S31: -0.4426 S32: 0.0303 S33: -0.0298 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 98:121) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6743 10.3180 8.4432 REMARK 3 T TENSOR REMARK 3 T11: 0.1991 T22: 0.1629 REMARK 3 T33: 0.2716 T12: -0.0184 REMARK 3 T13: -0.0095 T23: -0.0617 REMARK 3 L TENSOR REMARK 3 L11: 4.6761 L22: 1.9158 REMARK 3 L33: 2.1906 L12: -1.1812 REMARK 3 L13: -1.4041 L23: 0.4283 REMARK 3 S TENSOR REMARK 3 S11: 0.0385 S12: 0.0420 S13: 0.4376 REMARK 3 S21: 0.2040 S22: -0.0647 S23: 0.2229 REMARK 3 S31: -0.1158 S32: -0.3248 S33: 0.0785 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 122:193) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5015 2.5639 4.5355 REMARK 3 T TENSOR REMARK 3 T11: 0.1080 T22: 0.1262 REMARK 3 T33: 0.1558 T12: 0.0168 REMARK 3 T13: 0.0063 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 1.5343 L22: 2.1757 REMARK 3 L33: 0.9224 L12: 0.3946 REMARK 3 L13: 0.5231 L23: 0.0570 REMARK 3 S TENSOR REMARK 3 S11: 0.0575 S12: -0.1569 S13: 0.4488 REMARK 3 S21: 0.2076 S22: -0.0798 S23: 0.4425 REMARK 3 S31: -0.1391 S32: -0.2052 S33: 0.0048 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 194:216) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0938 -8.7088 9.3449 REMARK 3 T TENSOR REMARK 3 T11: 0.1262 T22: 0.1411 REMARK 3 T33: 0.1235 T12: -0.0279 REMARK 3 T13: -0.0236 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.3814 L22: 2.0802 REMARK 3 L33: 4.5655 L12: -1.1502 REMARK 3 L13: 1.5559 L23: -1.9294 REMARK 3 S TENSOR REMARK 3 S11: 0.0925 S12: -0.0824 S13: -0.0561 REMARK 3 S21: -0.0368 S22: -0.0130 S23: 0.0906 REMARK 3 S31: 0.2882 S32: 0.1275 S33: -0.0998 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 217:289) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3428 -11.9138 0.8687 REMARK 3 T TENSOR REMARK 3 T11: 0.1150 T22: 0.1283 REMARK 3 T33: 0.0938 T12: -0.0036 REMARK 3 T13: 0.0043 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 1.2655 L22: 0.6307 REMARK 3 L33: 1.3190 L12: 0.3663 REMARK 3 L13: 0.6451 L23: 0.2506 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: 0.1603 S13: -0.1232 REMARK 3 S21: -0.0612 S22: 0.0122 S23: -0.0202 REMARK 3 S31: 0.1805 S32: 0.0991 S33: -0.0296 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DLM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070483. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20778 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.925 REMARK 200 RESOLUTION RANGE LOW (A) : 76.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12300 REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.65100 REMARK 200 R SYM FOR SHELL (I) : 0.65100 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES, PH 7.8, 150 MM REMARK 280 NACL, 10% GLYCEROL, 0.5 MM ZNCL, 0.5 MM D-ARABONATE-1,4-LACTONE; REMARK 280 RESERVOIR (20% PEG3350, 100 MM TRIS PH 8.0); CRYOPROTECTION REMARK 280 (RESERVOIR, 5 MM ZN, 25 MM D-ARABONATE-1,4-LACTONE, 20% ETHYLENE REMARK 280 GLYCOL), SITTING DROP VAPOR DIFFUCTION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.43000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.11000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.11000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.43000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 290 REMARK 465 PRO A 291 REMARK 465 ALA A 292 REMARK 465 ASP A 293 REMARK 465 ALA A 294 REMARK 465 ARG A 295 REMARK 465 LEU A 296 REMARK 465 ALA A 297 REMARK 465 GLU A 298 REMARK 465 ASN A 299 REMARK 465 LEU A 300 REMARK 465 TYR A 301 REMARK 465 PHE A 302 REMARK 465 GLN A 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 40 O HOH A 513 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 179 O HOH A 709 4445 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 178 -166.17 -167.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 9 NE2 REMARK 620 2 HIS A 11 NE2 89.7 REMARK 620 3 ASP A 244 OD1 84.9 111.1 REMARK 620 4 HOH A 503 O 82.0 109.1 137.6 REMARK 620 5 HOH A 538 O 166.9 100.5 98.8 86.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 40 ND1 REMARK 620 2 HIS A 44 NE2 112.1 REMARK 620 3 HOH A 513 O 53.7 67.6 REMARK 620 4 HOH A 536 O 110.2 104.1 150.2 REMARK 620 5 HOH A 704 O 103.8 118.4 100.5 108.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 135 OD1 REMARK 620 2 HOH A 598 O 86.2 REMARK 620 3 HOH A 643 O 171.0 99.9 REMARK 620 4 HOH A 701 O 93.1 99.2 79.4 REMARK 620 5 HOH A 702 O 97.9 171.6 75.3 73.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 191 OE1 REMARK 620 2 GLU A 191 OE2 62.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 222 NE2 REMARK 620 2 HOH A 711 O 94.9 REMARK 620 3 HOH A 712 O 94.0 95.9 REMARK 620 4 HOH A 713 O 94.5 169.7 79.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 224 OE2 REMARK 620 2 ASP A 228 OD2 125.0 REMARK 620 3 ARG A 268 NH2 35.1 102.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-500235 RELATED DB: TARGETTRACK DBREF 4DLM A 1 296 UNP A9ANE4 A9ANE4_BURM1 1 296 SEQADV 4DLM ALA A 297 UNP A9ANE4 EXPRESSION TAG SEQADV 4DLM GLU A 298 UNP A9ANE4 EXPRESSION TAG SEQADV 4DLM ASN A 299 UNP A9ANE4 EXPRESSION TAG SEQADV 4DLM LEU A 300 UNP A9ANE4 EXPRESSION TAG SEQADV 4DLM TYR A 301 UNP A9ANE4 EXPRESSION TAG SEQADV 4DLM PHE A 302 UNP A9ANE4 EXPRESSION TAG SEQADV 4DLM GLN A 303 UNP A9ANE4 EXPRESSION TAG SEQRES 1 A 303 MET GLY ALA LEU ARG ILE ASP SER HIS GLN HIS PHE TRP SEQRES 2 A 303 ARG TYR ARG ALA ALA ASP TYR PRO TRP ILE GLY ALA GLY SEQRES 3 A 303 MET GLY VAL LEU ALA ARG ASP TYR LEU PRO ASP ALA LEU SEQRES 4 A 303 HIS PRO LEU MET HIS ALA GLN ALA LEU GLY ALA SER ILE SEQRES 5 A 303 ALA VAL GLN ALA ARG ALA GLY ARG ASP GLU THR ALA PHE SEQRES 6 A 303 LEU LEU GLU LEU ALA CYS ASP GLU ALA ARG ILE ALA ALA SEQRES 7 A 303 VAL VAL GLY TRP GLU ASP LEU ARG ALA PRO GLN LEU ALA SEQRES 8 A 303 GLU ARG VAL ALA GLU TRP ARG GLY THR LYS LEU ARG GLY SEQRES 9 A 303 PHE ARG HIS GLN LEU GLN ASP GLU ALA ASP VAL ARG ALA SEQRES 10 A 303 PHE VAL ASP ASP ALA ASP PHE ALA ARG GLY VAL ALA TRP SEQRES 11 A 303 LEU GLN ALA ASN ASP TYR VAL TYR ASP VAL LEU VAL PHE SEQRES 12 A 303 GLU ARG GLN LEU PRO ASP VAL GLN ALA PHE CYS ALA ARG SEQRES 13 A 303 HIS ASP ALA HIS TRP LEU VAL LEU ASP HIS ALA GLY LYS SEQRES 14 A 303 PRO ALA LEU ALA GLU PHE ASP ARG ASP ASP THR ALA LEU SEQRES 15 A 303 ALA ARG TRP ARG ALA ALA LEU ARG GLU LEU ALA ALA LEU SEQRES 16 A 303 PRO HIS VAL VAL CYS LYS LEU SER GLY LEU VAL THR GLU SEQRES 17 A 303 ALA ASP TRP ARG ARG GLY LEU ARG ALA SER ASP LEU ARG SEQRES 18 A 303 HIS ILE GLU GLN CYS LEU ASP ALA ALA LEU ASP ALA PHE SEQRES 19 A 303 GLY PRO GLN ARG LEU MET PHE GLY SER ASP TRP PRO VAL SEQRES 20 A 303 CYS LEU LEU ALA ALA SER TYR ASP GLU VAL ALA SER LEU SEQRES 21 A 303 VAL GLU ARG TRP ALA GLU SER ARG LEU SER ALA ALA GLU SEQRES 22 A 303 ARG SER ALA LEU TRP GLY GLY THR ALA ALA ARG CYS TYR SEQRES 23 A 303 ALA LEU PRO GLU PRO ALA ASP ALA ARG LEU ALA GLU ASN SEQRES 24 A 303 LEU TYR PHE GLN HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN A 405 1 HET ZN A 406 1 HET ZN A 407 1 HETNAM ZN ZINC ION FORMUL 2 ZN 7(ZN 2+) FORMUL 9 HOH *213(H2 O) HELIX 1 1 ARG A 16 TYR A 20 5 5 HELIX 2 2 MET A 27 ALA A 31 5 5 HELIX 3 3 LEU A 35 GLN A 46 1 12 HELIX 4 4 GLY A 59 GLU A 73 1 15 HELIX 5 5 GLN A 89 ALA A 95 1 7 HELIX 6 6 GLU A 96 ARG A 98 5 3 HELIX 7 7 GLN A 108 GLU A 112 5 5 HELIX 8 8 ASP A 114 ASP A 121 1 8 HELIX 9 9 ASP A 121 ASN A 134 1 14 HELIX 10 10 PHE A 143 ARG A 145 5 3 HELIX 11 11 GLN A 146 HIS A 157 1 12 HELIX 12 12 HIS A 166 LYS A 169 5 4 HELIX 13 13 ALA A 171 PHE A 175 5 5 HELIX 14 14 ASP A 179 ALA A 194 1 16 HELIX 15 15 ASP A 210 GLY A 214 5 5 HELIX 16 16 ARG A 216 GLY A 235 1 20 HELIX 17 17 PRO A 246 ALA A 251 5 6 HELIX 18 18 SER A 253 LEU A 269 1 17 HELIX 19 19 SER A 270 TRP A 278 1 9 HELIX 20 20 GLY A 279 TYR A 286 1 8 SHEET 1 A 8 ILE A 6 GLN A 10 0 SHEET 2 A 8 ALA A 50 VAL A 54 1 O VAL A 54 N GLN A 10 SHEET 3 A 8 ILE A 76 GLY A 81 1 O VAL A 80 N ALA A 53 SHEET 4 A 8 LEU A 102 ARG A 106 1 O ARG A 103 N VAL A 79 SHEET 5 A 8 VAL A 137 VAL A 140 1 O ASP A 139 N PHE A 105 SHEET 6 A 8 LEU A 162 LEU A 164 1 O VAL A 163 N VAL A 140 SHEET 7 A 8 VAL A 198 LEU A 202 1 O VAL A 199 N LEU A 164 SHEET 8 A 8 LEU A 239 PHE A 241 1 O MET A 240 N LEU A 202 LINK NE2 HIS A 9 ZN ZN A 401 1555 1555 2.23 LINK NE2 HIS A 11 ZN ZN A 401 1555 1555 2.10 LINK ND1 HIS A 40 ZN ZN A 402 1555 1555 2.13 LINK NE2 HIS A 44 ZN ZN A 402 1555 1555 2.04 LINK OD1 ASP A 135 ZN ZN A 404 1555 1555 2.02 LINK OD2 ASP A 158 ZN ZN A 405 1555 1555 2.09 LINK OE1 GLU A 191 ZN ZN A 406 1555 1555 2.09 LINK OE2 GLU A 191 ZN ZN A 406 1555 1555 2.10 LINK NE2 HIS A 222 ZN ZN A 403 1555 1555 2.05 LINK OE2BGLU A 224 ZN ZN A 407 1555 1555 2.54 LINK OD2 ASP A 228 ZN ZN A 407 1555 1555 1.98 LINK OD1 ASP A 244 ZN ZN A 401 1555 1555 1.93 LINK NH2AARG A 268 ZN ZN A 407 1555 1555 2.11 LINK ZN ZN A 401 O HOH A 503 1555 1555 2.04 LINK ZN ZN A 401 O HOH A 538 1555 1555 2.12 LINK ZN ZN A 402 O HOH A 513 1555 1555 2.17 LINK ZN ZN A 402 O HOH A 536 1555 1555 2.15 LINK ZN ZN A 402 O HOH A 704 1555 1555 2.11 LINK ZN ZN A 403 O HOH A 711 1555 1555 2.14 LINK ZN ZN A 403 O HOH A 712 1555 1555 2.05 LINK ZN ZN A 403 O HOH A 713 1555 1555 2.19 LINK ZN ZN A 404 O HOH A 598 1555 1555 2.12 LINK ZN ZN A 404 O HOH A 643 1555 1555 2.16 LINK ZN ZN A 404 O HOH A 701 1555 1555 2.11 LINK ZN ZN A 404 O HOH A 702 1555 1555 2.13 CISPEP 1 TRP A 245 PRO A 246 0 -0.75 SITE 1 AC1 6 HIS A 9 HIS A 11 HIS A 166 ASP A 244 SITE 2 AC1 6 HOH A 503 HOH A 538 SITE 1 AC2 5 HIS A 40 HIS A 44 HOH A 513 HOH A 536 SITE 2 AC2 5 HOH A 704 SITE 1 AC3 5 ALA A 3 HIS A 222 HOH A 711 HOH A 712 SITE 2 AC3 5 HOH A 713 SITE 1 AC4 6 ASP A 135 HOH A 569 HOH A 598 HOH A 643 SITE 2 AC4 6 HOH A 701 HOH A 702 SITE 1 AC5 2 GLU A 96 ASP A 158 SITE 1 AC6 1 GLU A 191 SITE 1 AC7 4 HIS A 44 GLU A 224 ASP A 228 ARG A 268 CRYST1 60.860 63.200 76.220 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016431 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015823 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013120 0.00000