HEADER SIGNALING PROTEIN 06-FEB-12 4DLQ TITLE CRYSTAL STRUCTURE OF THE GAIN AND HORMR DOMAINS OF CIRL 1/LATROPHILIN TITLE 2 1 (CL1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LATROPHILIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GAIN AND HORMR DOMAINS OF CL1, UNP RESIDUES 460-837; COMPND 5 SYNONYM: CALCIUM-INDEPENDENT ALPHA-LATROTOXIN RECEPTOR 1, CIRL-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: LATROPHILIN-1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 838-850; COMPND 11 SYNONYM: CALCIUM-INDEPENDENT ALPHA-LATROTOXIN RECEPTOR 1, CIRL-1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: LPHN1, CIRL, CIRL1, CL1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 11 ORGANISM_COMMON: RAT; SOURCE 12 ORGANISM_TAXID: 10116; SOURCE 13 GENE: LPHN1, CIRL, CIRL1, CL1; SOURCE 14 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 15 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS GAIN DOMAIN, INCLUDES THE GPS MOTIF, HORMONE BINDING DOMAIN, KEYWDS 2 AUTOPROTEOLYSIS, A-LATROTOXIN, EXTRACELLULAR DOMAIN, SIGNALING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.ARAC,A.A.BOUCARD,M.F.BOLLIGER,J.NGUYEN,M.SOLTIS,T.C.SUDHOF, AUTHOR 2 A.T.BRUNGER REVDAT 5 09-OCT-24 4DLQ 1 HETSYN REVDAT 4 29-JUL-20 4DLQ 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 17-JAN-18 4DLQ 1 REMARK REVDAT 2 04-APR-12 4DLQ 1 JRNL REVDAT 1 22-FEB-12 4DLQ 0 JRNL AUTH D.ARAC,A.A.BOUCARD,M.F.BOLLIGER,J.NGUYEN,S.M.SOLTIS, JRNL AUTH 2 T.C.SUDHOF,A.T.BRUNGER JRNL TITL A NOVEL EVOLUTIONARILY CONSERVED DOMAIN OF CELL-ADHESION JRNL TITL 2 GPCRS MEDIATES AUTOPROTEOLYSIS. JRNL REF EMBO J. V. 31 1364 2012 JRNL REFN ISSN 0261-4189 JRNL PMID 22333914 JRNL DOI 10.1038/EMBOJ.2012.26 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 58546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9431 - 5.0996 1.00 2813 131 0.1884 0.2242 REMARK 3 2 5.0996 - 4.0495 1.00 2708 133 0.1374 0.1366 REMARK 3 3 4.0495 - 3.5381 1.00 2700 143 0.1345 0.1436 REMARK 3 4 3.5381 - 3.2148 1.00 2643 156 0.1445 0.1659 REMARK 3 5 3.2148 - 2.9845 1.00 2648 149 0.1643 0.1942 REMARK 3 6 2.9845 - 2.8086 1.00 2651 164 0.1615 0.1921 REMARK 3 7 2.8086 - 2.6680 1.00 2630 150 0.1596 0.1657 REMARK 3 8 2.6680 - 2.5519 1.00 2661 132 0.1593 0.2120 REMARK 3 9 2.5519 - 2.4537 1.00 2669 119 0.1487 0.1704 REMARK 3 10 2.4537 - 2.3690 1.00 2620 159 0.1484 0.1803 REMARK 3 11 2.3690 - 2.2950 1.00 2644 131 0.1503 0.1792 REMARK 3 12 2.2950 - 2.2294 1.00 2654 125 0.1452 0.1869 REMARK 3 13 2.2294 - 2.1707 1.00 2632 133 0.1397 0.1709 REMARK 3 14 2.1707 - 2.1177 1.00 2633 140 0.1508 0.1745 REMARK 3 15 2.1177 - 2.0696 1.00 2609 156 0.1517 0.1770 REMARK 3 16 2.0696 - 2.0256 1.00 2627 145 0.1582 0.2086 REMARK 3 17 2.0256 - 1.9851 1.00 2626 141 0.1764 0.1929 REMARK 3 18 1.9851 - 1.9476 1.00 2614 143 0.1823 0.1907 REMARK 3 19 1.9476 - 1.9128 1.00 2653 135 0.1988 0.2639 REMARK 3 20 1.9128 - 1.8804 1.00 2625 123 0.2258 0.2613 REMARK 3 21 1.8804 - 1.8501 0.98 2550 128 0.2473 0.2827 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 60.60 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.82440 REMARK 3 B22 (A**2) : 1.82440 REMARK 3 B33 (A**2) : -3.64880 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3086 REMARK 3 ANGLE : 1.092 4195 REMARK 3 CHIRALITY : 0.082 486 REMARK 3 PLANARITY : 0.005 528 REMARK 3 DIHEDRAL : 17.726 1143 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 474:532 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.3582 40.2048 10.6921 REMARK 3 T TENSOR REMARK 3 T11: 0.1553 T22: 0.1969 REMARK 3 T33: 0.1638 T12: 0.0424 REMARK 3 T13: 0.0003 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.7406 L22: 0.9682 REMARK 3 L33: 0.9510 L12: 0.4737 REMARK 3 L13: -0.2012 L23: 0.6754 REMARK 3 S TENSOR REMARK 3 S11: -0.0495 S12: 0.0412 S13: -0.0588 REMARK 3 S21: 0.0300 S22: -0.0545 S23: 0.0696 REMARK 3 S31: -0.1234 S32: -0.1075 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 533:577 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6181 34.1770 -9.6373 REMARK 3 T TENSOR REMARK 3 T11: 0.1989 T22: 0.4722 REMARK 3 T33: 0.3246 T12: 0.0631 REMARK 3 T13: -0.0316 T23: -0.0663 REMARK 3 L TENSOR REMARK 3 L11: 0.4494 L22: 0.4961 REMARK 3 L33: 0.6515 L12: -0.3195 REMARK 3 L13: -0.4784 L23: 0.0342 REMARK 3 S TENSOR REMARK 3 S11: -0.1373 S12: -0.0824 S13: 0.2552 REMARK 3 S21: -0.0218 S22: -0.0822 S23: 0.1371 REMARK 3 S31: -0.1123 S32: -0.7284 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 578:633 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7173 23.8585 -18.4086 REMARK 3 T TENSOR REMARK 3 T11: 0.1481 T22: 0.3320 REMARK 3 T33: 0.2506 T12: -0.0404 REMARK 3 T13: 0.0235 T23: -0.0374 REMARK 3 L TENSOR REMARK 3 L11: 0.3781 L22: 0.5995 REMARK 3 L33: 1.0451 L12: -0.2789 REMARK 3 L13: -0.2656 L23: -0.0183 REMARK 3 S TENSOR REMARK 3 S11: -0.2015 S12: 0.0528 S13: 0.2557 REMARK 3 S21: -0.0930 S22: -0.0317 S23: 0.3472 REMARK 3 S31: -0.0445 S32: -0.4202 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 634:665 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.6019 23.2365 -8.9871 REMARK 3 T TENSOR REMARK 3 T11: 0.2180 T22: 0.2570 REMARK 3 T33: 0.2321 T12: -0.0241 REMARK 3 T13: 0.0317 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.7368 L22: 0.2722 REMARK 3 L33: 0.6890 L12: -0.3695 REMARK 3 L13: -0.0449 L23: -0.2369 REMARK 3 S TENSOR REMARK 3 S11: 0.0484 S12: -0.2619 S13: 0.0062 REMARK 3 S21: 0.1834 S22: -0.0880 S23: 0.1624 REMARK 3 S31: 0.1430 S32: -0.3209 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 666:713 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.0625 14.7042 -28.3377 REMARK 3 T TENSOR REMARK 3 T11: 0.2722 T22: 0.1694 REMARK 3 T33: 0.1622 T12: -0.0632 REMARK 3 T13: -0.0319 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.1611 L22: 0.7340 REMARK 3 L33: 0.9223 L12: -0.4104 REMARK 3 L13: 0.2991 L23: -0.8049 REMARK 3 S TENSOR REMARK 3 S11: 0.1151 S12: 0.1209 S13: -0.0110 REMARK 3 S21: -0.2885 S22: -0.0402 S23: -0.0190 REMARK 3 S31: 0.2997 S32: -0.0309 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 714:745 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.3688 13.5670 -15.6866 REMARK 3 T TENSOR REMARK 3 T11: 0.3008 T22: 0.1771 REMARK 3 T33: 0.2141 T12: -0.0595 REMARK 3 T13: -0.0209 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: 0.5712 L22: 0.1845 REMARK 3 L33: 0.4007 L12: -0.2554 REMARK 3 L13: 0.1924 L23: 0.0695 REMARK 3 S TENSOR REMARK 3 S11: 0.0714 S12: -0.1394 S13: -0.0743 REMARK 3 S21: 0.1371 S22: 0.0446 S23: 0.0718 REMARK 3 S31: 0.3677 S32: -0.1033 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 746:782 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.9419 14.4513 -11.4585 REMARK 3 T TENSOR REMARK 3 T11: 0.2357 T22: 0.1768 REMARK 3 T33: 0.1781 T12: -0.0003 REMARK 3 T13: 0.0112 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.0460 L22: 0.5323 REMARK 3 L33: 0.3578 L12: 0.0893 REMARK 3 L13: 0.3000 L23: 0.2487 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: -0.0564 S13: 0.0820 REMARK 3 S21: 0.1017 S22: 0.0130 S23: 0.0959 REMARK 3 S31: 0.2211 S32: 0.0811 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 783:837 ) OR ( CHAIN B AND RESID REMARK 3 838:852 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.6469 15.7517 -12.2399 REMARK 3 T TENSOR REMARK 3 T11: 0.1335 T22: 0.0760 REMARK 3 T33: 0.1058 T12: 0.0170 REMARK 3 T13: 0.0014 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.5830 L22: 0.4934 REMARK 3 L33: 1.0111 L12: 0.2411 REMARK 3 L13: 0.5875 L23: 0.2341 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: 0.0342 S13: -0.1138 REMARK 3 S21: 0.0409 S22: 0.0801 S23: -0.0752 REMARK 3 S31: 0.2156 S32: 0.1268 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DLQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070487. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-09; 07-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 65; 65 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL11-1; BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0; 2.0 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL; ASYMMETRIC REMARK 200 CUT 4.965 DEGS; DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD; MARMOSAIC REMARK 200 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58546 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 35.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26M (NH4)2SO4, 0.1M SODIUM ACETATE REMARK 280 PH 4.5, 0.2M NACL,, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.76833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.53667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.53667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.76833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 910 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 457 REMARK 465 ASP A 458 REMARK 465 PRO A 459 REMARK 465 PRO A 460 REMARK 465 ALA A 461 REMARK 465 PRO A 462 REMARK 465 SER A 463 REMARK 465 THR A 464 REMARK 465 ARG A 465 REMARK 465 ARG A 466 REMARK 465 PRO A 467 REMARK 465 PRO A 468 REMARK 465 ALA A 469 REMARK 465 PRO A 470 REMARK 465 ASN A 471 REMARK 465 LEU A 472 REMARK 465 HIS A 473 REMARK 465 PRO A 593 REMARK 465 ILE A 594 REMARK 465 GLU A 595 REMARK 465 ARG A 596 REMARK 465 GLU A 597 REMARK 465 SER A 598 REMARK 465 ALA A 599 REMARK 465 GLY A 600 REMARK 465 LYS A 601 REMARK 465 ASN A 602 REMARK 465 TYR A 603 REMARK 465 HIS B 853 REMARK 465 HIS B 854 REMARK 465 HIS B 855 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1030 O HOH A 1134 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 518 -38.83 70.42 REMARK 500 SER A 546 1.86 -69.56 REMARK 500 ASN A 732 -11.74 75.39 REMARK 500 THR A 743 53.20 -91.88 REMARK 500 ASN A 772 -43.77 70.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DLO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GAIN AND HORMR DOMAINS OF BRAIN REMARK 900 ANGIOGENESIS INHIBITOR 3 (BAI3) DBREF 4DLQ A 460 837 UNP O88917 LPHN1_RAT 460 837 DBREF 4DLQ B 838 850 UNP O88917 LPHN1_RAT 838 850 SEQADV 4DLQ ALA A 457 UNP O88917 EXPRESSION TAG SEQADV 4DLQ ASP A 458 UNP O88917 EXPRESSION TAG SEQADV 4DLQ PRO A 459 UNP O88917 EXPRESSION TAG SEQADV 4DLQ HIS B 851 UNP O88917 EXPRESSION TAG SEQADV 4DLQ HIS B 852 UNP O88917 EXPRESSION TAG SEQADV 4DLQ HIS B 853 UNP O88917 EXPRESSION TAG SEQADV 4DLQ HIS B 854 UNP O88917 EXPRESSION TAG SEQADV 4DLQ HIS B 855 UNP O88917 EXPRESSION TAG SEQRES 1 A 381 ALA ASP PRO PRO ALA PRO SER THR ARG ARG PRO PRO ALA SEQRES 2 A 381 PRO ASN LEU HIS VAL SER PRO GLU LEU PHE CYS GLU PRO SEQRES 3 A 381 ARG GLU VAL ARG ARG VAL GLN TRP PRO ALA THR GLN GLN SEQRES 4 A 381 GLY MET LEU VAL GLU ARG PRO CYS PRO LYS GLY THR ARG SEQRES 5 A 381 GLY ILE ALA SER PHE GLN CYS LEU PRO ALA LEU GLY LEU SEQRES 6 A 381 TRP ASN PRO ARG GLY PRO ASP LEU SER ASN CYS THR SER SEQRES 7 A 381 PRO TRP VAL ASN GLN VAL ALA GLN LYS ILE LYS SER GLY SEQRES 8 A 381 GLU ASN ALA ALA ASN ILE ALA SER GLU LEU ALA ARG HIS SEQRES 9 A 381 THR ARG GLY SER ILE TYR ALA GLY ASP VAL SER SER SER SEQRES 10 A 381 VAL LYS LEU MET GLU GLN LEU LEU ASP ILE LEU ASP ALA SEQRES 11 A 381 GLN LEU GLN ALA LEU ARG PRO ILE GLU ARG GLU SER ALA SEQRES 12 A 381 GLY LYS ASN TYR ASN LYS MET HIS LYS ARG GLU ARG THR SEQRES 13 A 381 CYS LYS ASP TYR ILE LYS ALA VAL VAL GLU THR VAL ASP SEQRES 14 A 381 ASN LEU LEU ARG PRO GLU ALA LEU GLU SER TRP LYS ASP SEQRES 15 A 381 MET ASN ALA THR GLU GLN VAL HIS THR ALA THR MET LEU SEQRES 16 A 381 LEU ASP VAL LEU GLU GLU GLY ALA PHE LEU LEU ALA ASP SEQRES 17 A 381 ASN VAL ARG GLU PRO ALA ARG PHE LEU ALA ALA LYS GLN SEQRES 18 A 381 ASN VAL VAL LEU GLU VAL THR VAL LEU SER THR GLU GLY SEQRES 19 A 381 GLN VAL GLN GLU LEU VAL PHE PRO GLN GLU TYR ALA SER SEQRES 20 A 381 GLU SER SER ILE GLN LEU SER ALA ASN THR ILE LYS GLN SEQRES 21 A 381 ASN SER ARG ASN GLY VAL VAL LYS VAL VAL PHE ILE LEU SEQRES 22 A 381 TYR ASN ASN LEU GLY LEU PHE LEU SER THR GLU ASN ALA SEQRES 23 A 381 THR VAL LYS LEU ALA GLY GLU ALA GLY THR GLY GLY PRO SEQRES 24 A 381 GLY GLY ALA SER LEU VAL VAL ASN SER GLN VAL ILE ALA SEQRES 25 A 381 ALA SER ILE ASN LYS GLU SER SER ARG VAL PHE LEU MET SEQRES 26 A 381 ASP PRO VAL ILE PHE THR VAL ALA HIS LEU GLU ALA LYS SEQRES 27 A 381 ASN HIS PHE ASN ALA ASN CYS SER PHE TRP ASN TYR SER SEQRES 28 A 381 GLU ARG SER MET LEU GLY TYR TRP SER THR GLN GLY CYS SEQRES 29 A 381 ARG LEU VAL GLU SER ASN LYS THR HIS THR THR CYS ALA SEQRES 30 A 381 CYS SER HIS LEU SEQRES 1 B 18 THR ASN PHE ALA VAL LEU MET ALA HIS ARG GLU ILE TYR SEQRES 2 B 18 HIS HIS HIS HIS HIS MODRES 4DLQ ASN A 640 ASN GLYCOSYLATION SITE MODRES 4DLQ ASN A 531 ASN GLYCOSYLATION SITE MODRES 4DLQ ASN A 741 ASN GLYCOSYLATION SITE MODRES 4DLQ ASN A 800 ASN GLYCOSYLATION SITE MODRES 4DLQ ASN A 826 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG A 901 14 HET NAG A 902 14 HET NAG A 903 14 HET NAG A 906 14 HET SO4 A 907 5 HET SO4 A 908 5 HET SO4 A 909 5 HET SO4 A 910 5 HET SO4 A 911 5 HET SO4 A 912 5 HET SO4 A 913 5 HET SO4 A 914 5 HET GOL A 915 6 HET GOL A 916 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 8 SO4 8(O4 S 2-) FORMUL 16 GOL 2(C3 H8 O3) FORMUL 18 HOH *275(H2 O) HELIX 1 1 PRO A 535 SER A 546 1 12 HELIX 2 2 ASN A 549 THR A 561 1 13 HELIX 3 3 TYR A 566 LEU A 591 1 26 HELIX 4 4 LYS A 605 LEU A 628 1 24 HELIX 5 5 ARG A 629 GLU A 631 5 3 HELIX 6 6 ALA A 632 LYS A 637 1 6 HELIX 7 7 ASN A 640 ASP A 664 1 25 HELIX 8 8 SER A 710 ASN A 717 1 8 HELIX 9 9 ASN A 732 LEU A 737 5 6 SHEET 1 A 2 PHE A 479 CYS A 480 0 SHEET 2 A 2 THR A 493 GLN A 494 -1 O THR A 493 N CYS A 480 SHEET 1 B 2 ARG A 483 VAL A 485 0 SHEET 2 B 2 VAL A 488 TRP A 490 -1 O TRP A 490 N ARG A 483 SHEET 1 C 2 LEU A 498 PRO A 502 0 SHEET 2 C 2 ILE A 510 GLN A 514 -1 O ALA A 511 N ARG A 501 SHEET 1 D 6 ALA A 670 ALA A 675 0 SHEET 2 D 6 VAL A 679 SER A 687 -1 O VAL A 683 N PHE A 672 SHEET 3 D 6 VAL A 722 TYR A 730 -1 O VAL A 725 N THR A 684 SHEET 4 D 6 VAL A 766 ILE A 771 -1 O ALA A 768 N ILE A 728 SHEET 5 D 6 ASN B 839 HIS B 846 -1 O PHE B 840 N ILE A 767 SHEET 6 D 6 LEU A 760 VAL A 762 -1 N VAL A 761 O MET B 844 SHEET 1 E 7 ALA A 670 ALA A 675 0 SHEET 2 E 7 VAL A 679 SER A 687 -1 O VAL A 683 N PHE A 672 SHEET 3 E 7 VAL A 722 TYR A 730 -1 O VAL A 725 N THR A 684 SHEET 4 E 7 VAL A 766 ILE A 771 -1 O ALA A 768 N ILE A 728 SHEET 5 E 7 ASN B 839 HIS B 846 -1 O PHE B 840 N ILE A 767 SHEET 6 E 7 HIS A 796 TYR A 806 -1 N SER A 802 O ALA B 841 SHEET 7 E 7 GLY A 813 SER A 816 -1 O TYR A 814 N ASN A 805 SHEET 1 F 5 LEU A 695 PHE A 697 0 SHEET 2 F 5 SER A 705 LEU A 709 -1 O ILE A 707 N PHE A 697 SHEET 3 F 5 PHE A 779 ALA A 789 -1 O THR A 787 N SER A 706 SHEET 4 F 5 HIS A 829 HIS A 836 -1 O CYS A 832 N PHE A 786 SHEET 5 F 5 CYS A 820 SER A 825 -1 N GLU A 824 O THR A 831 SSBOND 1 CYS A 480 CYS A 515 1555 1555 2.06 SSBOND 2 CYS A 503 CYS A 532 1555 1555 2.03 SSBOND 3 CYS A 801 CYS A 832 1555 1555 2.05 SSBOND 4 CYS A 820 CYS A 834 1555 1555 2.08 LINK ND2 ASN A 531 C1 NAG A 901 1555 1555 1.45 LINK ND2 ASN A 640 C1 NAG A 902 1555 1555 1.45 LINK ND2 ASN A 741 C1 NAG A 903 1555 1555 1.45 LINK ND2 ASN A 800 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN A 826 C1 NAG A 906 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 CISPEP 1 GLU A 668 PRO A 669 0 -2.94 CISPEP 2 PHE A 697 PRO A 698 0 3.35 CRYST1 124.000 124.000 77.305 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008065 0.004656 0.000000 0.00000 SCALE2 0.000000 0.009312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012936 0.00000