HEADER TRANSCRIPTION 06-FEB-12 4DM4 TITLE THE CONSERVED DOMAIN OF YEAST CDC73 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION CONTROL PROTEIN 73; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 235-393; COMPND 5 SYNONYM: RNA POLYMERASE-ASSOCIATED PROTEIN CDC73; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: CDC73, YLR418C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PAF1 COMPLEX, GTPASE-LIKE, TRANSCRIPTION ELONGATION, PROTEIN BINDING, KEYWDS 2 NUCLEUS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR H.CHEN,N.SHI,Y.GAO,X.LI,L.NIU,M.TENG REVDAT 2 20-MAR-24 4DM4 1 SEQADV REVDAT 1 22-AUG-12 4DM4 0 JRNL AUTH H.CHEN,N.SHI,Y.GAO,X.LI,M.TENG,L.NIU JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF THE CONSERVED C-TERMINAL DOMAIN JRNL TITL 2 OF TRANSCRIPTION FACTOR CDC73 FROM SACCHAROMYCES CEREVISIAE JRNL TITL 3 REVEALS A GTPASE-LIKE FOLD. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 953 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22868760 JRNL DOI 10.1107/S0907444912017325 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 24765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1324 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1737 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2588 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.13000 REMARK 3 B22 (A**2) : 0.90000 REMARK 3 B33 (A**2) : -2.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.223 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.199 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.692 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2678 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3649 ; 1.061 ; 1.921 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 316 ; 5.286 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;39.818 ;23.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 421 ;14.948 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;21.865 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 389 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2090 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1590 ; 0.419 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2588 ; 0.800 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1088 ; 1.169 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1061 ; 1.915 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9804 12.0625 38.4486 REMARK 3 T TENSOR REMARK 3 T11: 0.0701 T22: 0.0658 REMARK 3 T33: 0.0593 T12: -0.0123 REMARK 3 T13: 0.0315 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 2.2890 L22: 2.2130 REMARK 3 L33: 4.0319 L12: 0.1280 REMARK 3 L13: 1.2241 L23: 1.1002 REMARK 3 S TENSOR REMARK 3 S11: 0.1693 S12: 0.0436 S13: -0.0117 REMARK 3 S21: -0.1251 S22: -0.0635 S23: -0.0757 REMARK 3 S31: 0.1902 S32: 0.1034 S33: -0.1058 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 160 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8035 21.6895 41.6425 REMARK 3 T TENSOR REMARK 3 T11: 0.0973 T22: 0.0629 REMARK 3 T33: 0.1250 T12: 0.0393 REMARK 3 T13: 0.0088 T23: 0.0427 REMARK 3 L TENSOR REMARK 3 L11: 2.0687 L22: 1.1421 REMARK 3 L33: 5.3731 L12: -0.5487 REMARK 3 L13: -0.9008 L23: -0.1553 REMARK 3 S TENSOR REMARK 3 S11: 0.1555 S12: -0.0366 S13: 0.2095 REMARK 3 S21: -0.0668 S22: 0.0165 S23: 0.1005 REMARK 3 S31: -0.4966 S32: -0.0397 S33: -0.1720 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 283 REMARK 3 RESIDUE RANGE : B 201 B 304 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1660 17.1683 40.6469 REMARK 3 T TENSOR REMARK 3 T11: 0.1163 T22: 0.0903 REMARK 3 T33: 0.0863 T12: 0.0050 REMARK 3 T13: 0.0138 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.3591 L22: 0.4507 REMARK 3 L33: 0.4443 L12: -0.0349 REMARK 3 L13: 0.1403 L23: -0.3506 REMARK 3 S TENSOR REMARK 3 S11: 0.0462 S12: 0.0288 S13: 0.1046 REMARK 3 S21: -0.0331 S22: 0.0098 S23: 0.0407 REMARK 3 S31: -0.0629 S32: -0.0210 S33: -0.0560 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070501. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26095 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 73.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.7M SODIUM FORMATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.46900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.44650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.01450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.46900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.44650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.01450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.46900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.44650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.01450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.46900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.44650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.01450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 161 REMARK 465 GLU A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 HIS A 167 REMARK 465 HIS A 168 REMARK 465 ARG B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 161 REMARK 465 GLU B 162 REMARK 465 HIS B 163 REMARK 465 HIS B 164 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 465 HIS B 167 REMARK 465 HIS B 168 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 GLN A 99 CG CD OE1 NE2 REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 GLN A 103 CG CD OE1 NE2 REMARK 470 GLN A 123 CG CD OE1 NE2 REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 ARG B 53 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 59 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 GLN B 99 CG CD OE1 NE2 REMARK 470 GLN B 103 CG CD OE1 NE2 REMARK 470 GLN B 119 CG CD OE1 NE2 REMARK 470 GLN B 123 CG CD OE1 NE2 REMARK 470 LYS B 135 CG CD CE NZ REMARK 470 PHE B 137 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 138 CG CD CE NZ REMARK 470 ARG B 144 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 145 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS B 148 CG ND1 CD2 CE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 138 CE NZ REMARK 480 GLN B 123 CB REMARK 480 PHE B 137 CB REMARK 480 LYS B 152 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE B 137 CA PHE B 137 CB -0.146 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE B 137 CB - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 PHE B 137 N - CA - CB ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 15 142.21 -39.79 REMARK 500 REMARK 500 REMARK: NULL DBREF 4DM4 A 2 160 UNP Q06697 CDC73_YEAST 235 393 DBREF 4DM4 B 2 160 UNP Q06697 CDC73_YEAST 235 393 SEQADV 4DM4 LEU A 161 UNP Q06697 EXPRESSION TAG SEQADV 4DM4 GLU A 162 UNP Q06697 EXPRESSION TAG SEQADV 4DM4 HIS A 163 UNP Q06697 EXPRESSION TAG SEQADV 4DM4 HIS A 164 UNP Q06697 EXPRESSION TAG SEQADV 4DM4 HIS A 165 UNP Q06697 EXPRESSION TAG SEQADV 4DM4 HIS A 166 UNP Q06697 EXPRESSION TAG SEQADV 4DM4 HIS A 167 UNP Q06697 EXPRESSION TAG SEQADV 4DM4 HIS A 168 UNP Q06697 EXPRESSION TAG SEQADV 4DM4 LEU B 161 UNP Q06697 EXPRESSION TAG SEQADV 4DM4 GLU B 162 UNP Q06697 EXPRESSION TAG SEQADV 4DM4 HIS B 163 UNP Q06697 EXPRESSION TAG SEQADV 4DM4 HIS B 164 UNP Q06697 EXPRESSION TAG SEQADV 4DM4 HIS B 165 UNP Q06697 EXPRESSION TAG SEQADV 4DM4 HIS B 166 UNP Q06697 EXPRESSION TAG SEQADV 4DM4 HIS B 167 UNP Q06697 EXPRESSION TAG SEQADV 4DM4 HIS B 168 UNP Q06697 EXPRESSION TAG SEQRES 1 A 167 ARG LYS ASP PRO ILE ILE LEU ILE PRO SER ALA ALA SER SEQRES 2 A 167 SER ILE LEU THR VAL ALA ASN ILE LYS GLN PHE LEU LEU SEQRES 3 A 167 GLU SER LYS TYR VAL ASN PRO ARG ASN LEU PRO SER VAL SEQRES 4 A 167 PRO ASN GLY LEU VAL ASN ILE GLU LYS ASN PHE GLU ARG SEQRES 5 A 167 ILE SER ARG PRO ILE ARG PHE ILE ILE VAL ASP ASN THR SEQRES 6 A 167 ARG MET PHE THR LYS PRO GLU TYR TRP ASP ARG VAL VAL SEQRES 7 A 167 ALA ILE PHE THR THR GLY HIS THR TRP GLN PHE ASN ASN SEQRES 8 A 167 TYR GLN TRP ASN SER PRO GLN GLU LEU PHE GLN ARG CYS SEQRES 9 A 167 LYS GLY TYR TYR PHE HIS PHE ALA GLY ASP SER VAL PRO SEQRES 10 A 167 GLN HIS VAL GLN GLN TRP ASN VAL GLU LYS VAL GLU LEU SEQRES 11 A 167 ASP LYS ASN LYS ARG PHE LYS ASP VAL GLU VAL VAL ARG SEQRES 12 A 167 TYR PHE TRP HIS SER LEU GLU LYS GLU LEU ILE SER ARG SEQRES 13 A 167 GLY TYR ARG LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 167 ARG LYS ASP PRO ILE ILE LEU ILE PRO SER ALA ALA SER SEQRES 2 B 167 SER ILE LEU THR VAL ALA ASN ILE LYS GLN PHE LEU LEU SEQRES 3 B 167 GLU SER LYS TYR VAL ASN PRO ARG ASN LEU PRO SER VAL SEQRES 4 B 167 PRO ASN GLY LEU VAL ASN ILE GLU LYS ASN PHE GLU ARG SEQRES 5 B 167 ILE SER ARG PRO ILE ARG PHE ILE ILE VAL ASP ASN THR SEQRES 6 B 167 ARG MET PHE THR LYS PRO GLU TYR TRP ASP ARG VAL VAL SEQRES 7 B 167 ALA ILE PHE THR THR GLY HIS THR TRP GLN PHE ASN ASN SEQRES 8 B 167 TYR GLN TRP ASN SER PRO GLN GLU LEU PHE GLN ARG CYS SEQRES 9 B 167 LYS GLY TYR TYR PHE HIS PHE ALA GLY ASP SER VAL PRO SEQRES 10 B 167 GLN HIS VAL GLN GLN TRP ASN VAL GLU LYS VAL GLU LEU SEQRES 11 B 167 ASP LYS ASN LYS ARG PHE LYS ASP VAL GLU VAL VAL ARG SEQRES 12 B 167 TYR PHE TRP HIS SER LEU GLU LYS GLU LEU ILE SER ARG SEQRES 13 B 167 GLY TYR ARG LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *187(H2 O) HELIX 1 1 ASN A 21 SER A 29 1 9 HELIX 2 2 ASN A 33 LEU A 37 5 5 HELIX 3 3 LYS A 71 ASP A 76 5 6 HELIX 4 4 HIS A 86 ASN A 91 5 6 HELIX 5 5 SER A 97 CYS A 105 1 9 HELIX 6 6 PRO A 118 TRP A 124 1 7 HELIX 7 7 LYS A 135 PHE A 137 5 3 HELIX 8 8 LYS A 138 ARG A 157 1 20 HELIX 9 9 ASN B 21 LEU B 27 1 7 HELIX 10 10 LYS B 71 ASP B 76 5 6 HELIX 11 11 HIS B 86 ASN B 91 5 6 HELIX 12 12 SER B 97 CYS B 105 1 9 HELIX 13 13 PRO B 118 TRP B 124 1 7 HELIX 14 14 LYS B 135 PHE B 137 5 3 HELIX 15 15 LYS B 138 ARG B 157 1 20 SHEET 1 A 6 LEU A 44 LYS A 49 0 SHEET 2 A 6 ILE A 58 VAL A 63 -1 O PHE A 60 N ILE A 47 SHEET 3 A 6 ILE A 6 LEU A 8 1 N ILE A 7 O ILE A 61 SHEET 4 A 6 VAL A 78 THR A 83 1 O PHE A 82 N LEU A 8 SHEET 5 A 6 LYS A 106 PHE A 112 1 O TYR A 108 N THR A 83 SHEET 6 A 6 VAL A 126 LEU A 131 1 O VAL A 129 N TYR A 109 SHEET 1 B 6 LEU B 44 LYS B 49 0 SHEET 2 B 6 ILE B 58 VAL B 63 -1 O PHE B 60 N ILE B 47 SHEET 3 B 6 ILE B 6 LEU B 8 1 N ILE B 7 O ILE B 61 SHEET 4 B 6 VAL B 78 THR B 83 1 O ALA B 80 N LEU B 8 SHEET 5 B 6 GLY B 107 PHE B 112 1 O TYR B 108 N ILE B 81 SHEET 6 B 6 GLU B 127 LEU B 131 1 O GLU B 127 N GLY B 107 CRYST1 90.938 96.893 114.029 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010997 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010321 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008770 0.00000