data_4DMW # _entry.id 4DMW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4DMW RCSB RCSB070528 WWPDB D_1000070528 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4DMV 'Crystal structure of APO GT domain of Clostridium difficile toxin A (TcdA)' unspecified PDB 3SRZ 'Clostridium difficile toxin A (TcdA) glucolsyltransferase domain bound to UDP-glucose' unspecified PDB 3SS1 'Clostridium difficile toxin A (TcdA) glucolsyltransferase domain' unspecified # _pdbx_database_status.entry_id 4DMW _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-02-08 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Malito, E.' 1 ;D'Urzo, N. ; 2 'Bottomley, M.J.' 3 'Biancucci, M.' 4 'Scarselli, M.' 5 'Maione, D.' 6 'Martinelli, M.' 7 # _citation.id primary _citation.title ;The structure of Clostridium difficile toxin A glucosyltransferase domain bound to Mn2+ and UDP provides insights into glucosyltransferase activity and product release. ; _citation.journal_abbrev 'Febs J.' _citation.journal_volume 279 _citation.page_first 3085 _citation.page_last 3097 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1742-464X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22747490 _citation.pdbx_database_id_DOI 10.1111/j.1742-4658.2012.08688.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary ;D'Urzo, N. ; 1 primary 'Malito, E.' 2 primary 'Biancucci, M.' 3 primary 'Bottomley, M.J.' 4 primary 'Maione, D.' 5 primary 'Scarselli, M.' 6 primary 'Martinelli, M.' 7 # _cell.entry_id 4DMW _cell.length_a 66.660 _cell.length_b 156.730 _cell.length_c 65.750 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4DMW _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Toxin A' 64541.672 1 2.4.1.- ? 'Glucosyltransferase domain (UNP residues 1-541)' ? 2 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 3 non-polymer syn "URIDINE-5'-DIPHOSPHATE" 404.161 1 ? ? ? ? 4 water nat water 18.015 65 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name TcdA # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAHHHHHHDDDDKGSMSLISKEELIKLAYSIRPRENEYKTILTNLDEYNKLTTNNNENKYLQLKKLNESIDVFMNKYKTS SRNRALSNLKKDILKEVILIKNSNTSPVEKNLHFVWIGGEVSDIALEYIKQWADINAEYNIKLWYDSEAFLVNTLKKAIV ESSTTEALQLLEEEIQNPQFDNMKFYKKRMEFIYDRQKRFINYYKSQINKPTVPTIDDIIKSHLVSEYNRDETVLESYRT NSLRKINSNHGIDIRANSLFTEQELLNIYSQELLNRGNLAAASDIVRLLALKNFGGVYLDVDMLPGIHSDLFKTISRPSS IGLDRWEMIKLEAIMKYKKYINNYTSENFDKLDQQLKDNFKLIIESKSEKSEIFSKLENLNVSDLEIKIAFALGSVINQA LISKQGSYLTNLVIEQVKNRYQFLNQHLNPAIESDNNFTDTTKIFHDSLFNSATAENSMFLTKIAPYLQVGFMPEARSTI SLSGPGAYASAYYDFINLQENTIEKTLKASDLIEFKFPENNLSQLTEQEINSLWSFDQASAKYQFEKYVRDYTGGS ; _entity_poly.pdbx_seq_one_letter_code_can ;MAHHHHHHDDDDKGSMSLISKEELIKLAYSIRPRENEYKTILTNLDEYNKLTTNNNENKYLQLKKLNESIDVFMNKYKTS SRNRALSNLKKDILKEVILIKNSNTSPVEKNLHFVWIGGEVSDIALEYIKQWADINAEYNIKLWYDSEAFLVNTLKKAIV ESSTTEALQLLEEEIQNPQFDNMKFYKKRMEFIYDRQKRFINYYKSQINKPTVPTIDDIIKSHLVSEYNRDETVLESYRT NSLRKINSNHGIDIRANSLFTEQELLNIYSQELLNRGNLAAASDIVRLLALKNFGGVYLDVDMLPGIHSDLFKTISRPSS IGLDRWEMIKLEAIMKYKKYINNYTSENFDKLDQQLKDNFKLIIESKSEKSEIFSKLENLNVSDLEIKIAFALGSVINQA LISKQGSYLTNLVIEQVKNRYQFLNQHLNPAIESDNNFTDTTKIFHDSLFNSATAENSMFLTKIAPYLQVGFMPEARSTI SLSGPGAYASAYYDFINLQENTIEKTLKASDLIEFKFPENNLSQLTEQEINSLWSFDQASAKYQFEKYVRDYTGGS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 ASP n 1 10 ASP n 1 11 ASP n 1 12 ASP n 1 13 LYS n 1 14 GLY n 1 15 SER n 1 16 MET n 1 17 SER n 1 18 LEU n 1 19 ILE n 1 20 SER n 1 21 LYS n 1 22 GLU n 1 23 GLU n 1 24 LEU n 1 25 ILE n 1 26 LYS n 1 27 LEU n 1 28 ALA n 1 29 TYR n 1 30 SER n 1 31 ILE n 1 32 ARG n 1 33 PRO n 1 34 ARG n 1 35 GLU n 1 36 ASN n 1 37 GLU n 1 38 TYR n 1 39 LYS n 1 40 THR n 1 41 ILE n 1 42 LEU n 1 43 THR n 1 44 ASN n 1 45 LEU n 1 46 ASP n 1 47 GLU n 1 48 TYR n 1 49 ASN n 1 50 LYS n 1 51 LEU n 1 52 THR n 1 53 THR n 1 54 ASN n 1 55 ASN n 1 56 ASN n 1 57 GLU n 1 58 ASN n 1 59 LYS n 1 60 TYR n 1 61 LEU n 1 62 GLN n 1 63 LEU n 1 64 LYS n 1 65 LYS n 1 66 LEU n 1 67 ASN n 1 68 GLU n 1 69 SER n 1 70 ILE n 1 71 ASP n 1 72 VAL n 1 73 PHE n 1 74 MET n 1 75 ASN n 1 76 LYS n 1 77 TYR n 1 78 LYS n 1 79 THR n 1 80 SER n 1 81 SER n 1 82 ARG n 1 83 ASN n 1 84 ARG n 1 85 ALA n 1 86 LEU n 1 87 SER n 1 88 ASN n 1 89 LEU n 1 90 LYS n 1 91 LYS n 1 92 ASP n 1 93 ILE n 1 94 LEU n 1 95 LYS n 1 96 GLU n 1 97 VAL n 1 98 ILE n 1 99 LEU n 1 100 ILE n 1 101 LYS n 1 102 ASN n 1 103 SER n 1 104 ASN n 1 105 THR n 1 106 SER n 1 107 PRO n 1 108 VAL n 1 109 GLU n 1 110 LYS n 1 111 ASN n 1 112 LEU n 1 113 HIS n 1 114 PHE n 1 115 VAL n 1 116 TRP n 1 117 ILE n 1 118 GLY n 1 119 GLY n 1 120 GLU n 1 121 VAL n 1 122 SER n 1 123 ASP n 1 124 ILE n 1 125 ALA n 1 126 LEU n 1 127 GLU n 1 128 TYR n 1 129 ILE n 1 130 LYS n 1 131 GLN n 1 132 TRP n 1 133 ALA n 1 134 ASP n 1 135 ILE n 1 136 ASN n 1 137 ALA n 1 138 GLU n 1 139 TYR n 1 140 ASN n 1 141 ILE n 1 142 LYS n 1 143 LEU n 1 144 TRP n 1 145 TYR n 1 146 ASP n 1 147 SER n 1 148 GLU n 1 149 ALA n 1 150 PHE n 1 151 LEU n 1 152 VAL n 1 153 ASN n 1 154 THR n 1 155 LEU n 1 156 LYS n 1 157 LYS n 1 158 ALA n 1 159 ILE n 1 160 VAL n 1 161 GLU n 1 162 SER n 1 163 SER n 1 164 THR n 1 165 THR n 1 166 GLU n 1 167 ALA n 1 168 LEU n 1 169 GLN n 1 170 LEU n 1 171 LEU n 1 172 GLU n 1 173 GLU n 1 174 GLU n 1 175 ILE n 1 176 GLN n 1 177 ASN n 1 178 PRO n 1 179 GLN n 1 180 PHE n 1 181 ASP n 1 182 ASN n 1 183 MET n 1 184 LYS n 1 185 PHE n 1 186 TYR n 1 187 LYS n 1 188 LYS n 1 189 ARG n 1 190 MET n 1 191 GLU n 1 192 PHE n 1 193 ILE n 1 194 TYR n 1 195 ASP n 1 196 ARG n 1 197 GLN n 1 198 LYS n 1 199 ARG n 1 200 PHE n 1 201 ILE n 1 202 ASN n 1 203 TYR n 1 204 TYR n 1 205 LYS n 1 206 SER n 1 207 GLN n 1 208 ILE n 1 209 ASN n 1 210 LYS n 1 211 PRO n 1 212 THR n 1 213 VAL n 1 214 PRO n 1 215 THR n 1 216 ILE n 1 217 ASP n 1 218 ASP n 1 219 ILE n 1 220 ILE n 1 221 LYS n 1 222 SER n 1 223 HIS n 1 224 LEU n 1 225 VAL n 1 226 SER n 1 227 GLU n 1 228 TYR n 1 229 ASN n 1 230 ARG n 1 231 ASP n 1 232 GLU n 1 233 THR n 1 234 VAL n 1 235 LEU n 1 236 GLU n 1 237 SER n 1 238 TYR n 1 239 ARG n 1 240 THR n 1 241 ASN n 1 242 SER n 1 243 LEU n 1 244 ARG n 1 245 LYS n 1 246 ILE n 1 247 ASN n 1 248 SER n 1 249 ASN n 1 250 HIS n 1 251 GLY n 1 252 ILE n 1 253 ASP n 1 254 ILE n 1 255 ARG n 1 256 ALA n 1 257 ASN n 1 258 SER n 1 259 LEU n 1 260 PHE n 1 261 THR n 1 262 GLU n 1 263 GLN n 1 264 GLU n 1 265 LEU n 1 266 LEU n 1 267 ASN n 1 268 ILE n 1 269 TYR n 1 270 SER n 1 271 GLN n 1 272 GLU n 1 273 LEU n 1 274 LEU n 1 275 ASN n 1 276 ARG n 1 277 GLY n 1 278 ASN n 1 279 LEU n 1 280 ALA n 1 281 ALA n 1 282 ALA n 1 283 SER n 1 284 ASP n 1 285 ILE n 1 286 VAL n 1 287 ARG n 1 288 LEU n 1 289 LEU n 1 290 ALA n 1 291 LEU n 1 292 LYS n 1 293 ASN n 1 294 PHE n 1 295 GLY n 1 296 GLY n 1 297 VAL n 1 298 TYR n 1 299 LEU n 1 300 ASP n 1 301 VAL n 1 302 ASP n 1 303 MET n 1 304 LEU n 1 305 PRO n 1 306 GLY n 1 307 ILE n 1 308 HIS n 1 309 SER n 1 310 ASP n 1 311 LEU n 1 312 PHE n 1 313 LYS n 1 314 THR n 1 315 ILE n 1 316 SER n 1 317 ARG n 1 318 PRO n 1 319 SER n 1 320 SER n 1 321 ILE n 1 322 GLY n 1 323 LEU n 1 324 ASP n 1 325 ARG n 1 326 TRP n 1 327 GLU n 1 328 MET n 1 329 ILE n 1 330 LYS n 1 331 LEU n 1 332 GLU n 1 333 ALA n 1 334 ILE n 1 335 MET n 1 336 LYS n 1 337 TYR n 1 338 LYS n 1 339 LYS n 1 340 TYR n 1 341 ILE n 1 342 ASN n 1 343 ASN n 1 344 TYR n 1 345 THR n 1 346 SER n 1 347 GLU n 1 348 ASN n 1 349 PHE n 1 350 ASP n 1 351 LYS n 1 352 LEU n 1 353 ASP n 1 354 GLN n 1 355 GLN n 1 356 LEU n 1 357 LYS n 1 358 ASP n 1 359 ASN n 1 360 PHE n 1 361 LYS n 1 362 LEU n 1 363 ILE n 1 364 ILE n 1 365 GLU n 1 366 SER n 1 367 LYS n 1 368 SER n 1 369 GLU n 1 370 LYS n 1 371 SER n 1 372 GLU n 1 373 ILE n 1 374 PHE n 1 375 SER n 1 376 LYS n 1 377 LEU n 1 378 GLU n 1 379 ASN n 1 380 LEU n 1 381 ASN n 1 382 VAL n 1 383 SER n 1 384 ASP n 1 385 LEU n 1 386 GLU n 1 387 ILE n 1 388 LYS n 1 389 ILE n 1 390 ALA n 1 391 PHE n 1 392 ALA n 1 393 LEU n 1 394 GLY n 1 395 SER n 1 396 VAL n 1 397 ILE n 1 398 ASN n 1 399 GLN n 1 400 ALA n 1 401 LEU n 1 402 ILE n 1 403 SER n 1 404 LYS n 1 405 GLN n 1 406 GLY n 1 407 SER n 1 408 TYR n 1 409 LEU n 1 410 THR n 1 411 ASN n 1 412 LEU n 1 413 VAL n 1 414 ILE n 1 415 GLU n 1 416 GLN n 1 417 VAL n 1 418 LYS n 1 419 ASN n 1 420 ARG n 1 421 TYR n 1 422 GLN n 1 423 PHE n 1 424 LEU n 1 425 ASN n 1 426 GLN n 1 427 HIS n 1 428 LEU n 1 429 ASN n 1 430 PRO n 1 431 ALA n 1 432 ILE n 1 433 GLU n 1 434 SER n 1 435 ASP n 1 436 ASN n 1 437 ASN n 1 438 PHE n 1 439 THR n 1 440 ASP n 1 441 THR n 1 442 THR n 1 443 LYS n 1 444 ILE n 1 445 PHE n 1 446 HIS n 1 447 ASP n 1 448 SER n 1 449 LEU n 1 450 PHE n 1 451 ASN n 1 452 SER n 1 453 ALA n 1 454 THR n 1 455 ALA n 1 456 GLU n 1 457 ASN n 1 458 SER n 1 459 MET n 1 460 PHE n 1 461 LEU n 1 462 THR n 1 463 LYS n 1 464 ILE n 1 465 ALA n 1 466 PRO n 1 467 TYR n 1 468 LEU n 1 469 GLN n 1 470 VAL n 1 471 GLY n 1 472 PHE n 1 473 MET n 1 474 PRO n 1 475 GLU n 1 476 ALA n 1 477 ARG n 1 478 SER n 1 479 THR n 1 480 ILE n 1 481 SER n 1 482 LEU n 1 483 SER n 1 484 GLY n 1 485 PRO n 1 486 GLY n 1 487 ALA n 1 488 TYR n 1 489 ALA n 1 490 SER n 1 491 ALA n 1 492 TYR n 1 493 TYR n 1 494 ASP n 1 495 PHE n 1 496 ILE n 1 497 ASN n 1 498 LEU n 1 499 GLN n 1 500 GLU n 1 501 ASN n 1 502 THR n 1 503 ILE n 1 504 GLU n 1 505 LYS n 1 506 THR n 1 507 LEU n 1 508 LYS n 1 509 ALA n 1 510 SER n 1 511 ASP n 1 512 LEU n 1 513 ILE n 1 514 GLU n 1 515 PHE n 1 516 LYS n 1 517 PHE n 1 518 PRO n 1 519 GLU n 1 520 ASN n 1 521 ASN n 1 522 LEU n 1 523 SER n 1 524 GLN n 1 525 LEU n 1 526 THR n 1 527 GLU n 1 528 GLN n 1 529 GLU n 1 530 ILE n 1 531 ASN n 1 532 SER n 1 533 LEU n 1 534 TRP n 1 535 SER n 1 536 PHE n 1 537 ASP n 1 538 GLN n 1 539 ALA n 1 540 SER n 1 541 ALA n 1 542 LYS n 1 543 TYR n 1 544 GLN n 1 545 PHE n 1 546 GLU n 1 547 LYS n 1 548 TYR n 1 549 VAL n 1 550 ARG n 1 551 ASP n 1 552 TYR n 1 553 THR n 1 554 GLY n 1 555 GLY n 1 556 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'toxA, tcdA' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Clostridium difficile' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1496 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Brevibacillus choshinensis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 54911 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TOXA_CLODI _struct_ref.pdbx_db_accession P16154 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSLISKEELIKLAYSIRPRENEYKTILTNLDEYNKLTTNNNENKYLQLKKLNESIDVFMNKYKTSSRNRALSNLKKDILK EVILIKNSNTSPVEKNLHFVWIGGEVSDIALEYIKQWADINAEYNIKLWYDSEAFLVNTLKKAIVESSTTEALQLLEEEI QNPQFDNMKFYKKRMEFIYDRQKRFINYYKSQINKPTVPTIDDIIKSHLVSEYNRDETVLESYRTNSLRKINSNHGIDIR ANSLFTEQELLNIYSQELLNRGNLAAASDIVRLLALKNFGGVYLDVDMLPGIHSDLFKTISRPSSIGLDRWEMIKLEAIM KYKKYINNYTSENFDKLDQQLKDNFKLIIESKSEKSEIFSKLENLNVSDLEIKIAFALGSVINQALISKQGSYLTNLVIE QVKNRYQFLNQHLNPAIESDNNFTDTTKIFHDSLFNSATAENSMFLTKIAPYLQVGFMPEARSTISLSGPGAYASAYYDF INLQENTIEKTLKASDLIEFKFPENNLSQLTEQEINSLWSFDQASAKYQFEKYVRDYTGGS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4DMW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 16 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 556 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P16154 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 541 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 541 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4DMW MET A 1 ? UNP P16154 ? ? 'EXPRESSION TAG' -14 1 1 4DMW ALA A 2 ? UNP P16154 ? ? 'EXPRESSION TAG' -13 2 1 4DMW HIS A 3 ? UNP P16154 ? ? 'EXPRESSION TAG' -12 3 1 4DMW HIS A 4 ? UNP P16154 ? ? 'EXPRESSION TAG' -11 4 1 4DMW HIS A 5 ? UNP P16154 ? ? 'EXPRESSION TAG' -10 5 1 4DMW HIS A 6 ? UNP P16154 ? ? 'EXPRESSION TAG' -9 6 1 4DMW HIS A 7 ? UNP P16154 ? ? 'EXPRESSION TAG' -8 7 1 4DMW HIS A 8 ? UNP P16154 ? ? 'EXPRESSION TAG' -7 8 1 4DMW ASP A 9 ? UNP P16154 ? ? 'EXPRESSION TAG' -6 9 1 4DMW ASP A 10 ? UNP P16154 ? ? 'EXPRESSION TAG' -5 10 1 4DMW ASP A 11 ? UNP P16154 ? ? 'EXPRESSION TAG' -4 11 1 4DMW ASP A 12 ? UNP P16154 ? ? 'EXPRESSION TAG' -3 12 1 4DMW LYS A 13 ? UNP P16154 ? ? 'EXPRESSION TAG' -2 13 1 4DMW GLY A 14 ? UNP P16154 ? ? 'EXPRESSION TAG' -1 14 1 4DMW SER A 15 ? UNP P16154 ? ? 'EXPRESSION TAG' 0 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UDP 'RNA linking' . "URIDINE-5'-DIPHOSPHATE" ? 'C9 H14 N2 O12 P2' 404.161 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4DMW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.66 _exptl_crystal.density_percent_sol 53.77 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2 M diammonium tartrate, 20% w/v PEG3350, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 277K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-09-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'channel cut Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.93930 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.93930 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4DMW _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 78.365 _reflns.d_resolution_high 2.500 _reflns.number_obs 22520 _reflns.number_all 22520 _reflns.percent_possible_obs 92.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.145 _reflns.pdbx_netI_over_sigmaI 6.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 2.500 2.640 86.8 0.521 0.521 1.40 3.8 ? ? ? ? ? ? 1 2 2.640 2.800 88.9 0.369 0.369 1.90 3.7 ? ? ? ? ? ? 1 3 2.800 2.990 90.9 0.258 0.258 2.80 3.6 ? ? ? ? ? ? 1 4 2.990 3.230 93.3 0.185 0.185 3.90 3.6 ? ? ? ? ? ? 1 5 3.230 3.540 95.6 0.134 0.134 4.90 3.6 ? ? ? ? ? ? 1 6 3.540 3.950 94.5 0.231 0.231 1.40 3.3 ? ? ? ? ? ? 1 7 3.950 4.560 95.8 0.079 0.079 7.60 3.8 ? ? ? ? ? ? 1 8 4.560 5.590 95.3 0.080 0.080 7.00 3.7 ? ? ? ? ? ? 1 9 5.590 7.910 94.8 0.077 0.077 7.90 3.6 ? ? ? ? ? ? 1 10 7.910 41.119 91.8 0.039 0.039 12.90 3.7 ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4DMW _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 22429 _refine.ls_number_reflns_all 22429 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.119 _refine.ls_d_res_high 2.500 _refine.ls_percent_reflns_obs 91.26 _refine.ls_R_factor_obs 0.2045 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2015 _refine.ls_R_factor_R_free 0.2591 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.09 _refine.ls_number_reflns_R_free 1142 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.000 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[2][2] 0.0000 _refine.aniso_B[3][3] 0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.322 _refine.solvent_model_param_bsol 17.041 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 4DMV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.34 _refine.pdbx_overall_phase_error 25.14 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 4389 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 65 _refine_hist.number_atoms_total 4480 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 41.119 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 4493 'X-RAY DIFFRACTION' ? f_angle_d 1.173 ? ? 6068 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.797 ? ? 1703 'X-RAY DIFFRACTION' ? f_chiral_restr 0.079 ? ? 679 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 771 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.500 2.6138 2469 0.2708 86.00 0.3746 . . 120 . . . . 'X-RAY DIFFRACTION' . 2.6138 2.7516 2524 0.2381 88.00 0.2964 . . 133 . . . . 'X-RAY DIFFRACTION' . 2.7516 2.9240 2577 0.2105 90.00 0.2671 . . 130 . . . . 'X-RAY DIFFRACTION' . 2.9240 3.1497 2642 0.2073 92.00 0.2663 . . 149 . . . . 'X-RAY DIFFRACTION' . 3.1497 3.4665 2716 0.2104 94.00 0.2461 . . 152 . . . . 'X-RAY DIFFRACTION' . 3.4665 3.9677 2648 0.2322 92.00 0.2860 . . 166 . . . . 'X-RAY DIFFRACTION' . 3.9677 4.9975 2807 0.1538 95.00 0.2281 . . 160 . . . . 'X-RAY DIFFRACTION' . 4.9975 41.1250 2904 0.1846 93.00 0.2221 . . 132 . . . . # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 4DMW _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? # _struct.entry_id 4DMW _struct.title 'Crystal structure of the GT domain of Clostridium difficile toxin A (TcdA) in complex with UDP and Manganese' _struct.pdbx_descriptor 'Toxin A (E.C.2.4.1.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DMW _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'glucosyltransferase, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 20 ? ALA A 28 ? SER A 5 ALA A 13 1 ? 9 HELX_P HELX_P2 2 GLU A 35 ? LYS A 50 ? GLU A 20 LYS A 35 1 ? 16 HELX_P HELX_P3 3 ASN A 55 ? TYR A 77 ? ASN A 40 TYR A 62 1 ? 23 HELX_P HELX_P4 4 ARG A 82 ? ASN A 102 ? ARG A 67 ASN A 87 1 ? 21 HELX_P HELX_P5 5 SER A 122 ? ASN A 136 ? SER A 107 ASN A 121 1 ? 15 HELX_P HELX_P6 6 LEU A 151 ? GLN A 176 ? LEU A 136 GLN A 161 1 ? 26 HELX_P HELX_P7 7 ASP A 181 ? ILE A 208 ? ASP A 166 ILE A 193 1 ? 28 HELX_P HELX_P8 8 THR A 215 ? TYR A 228 ? THR A 200 TYR A 213 1 ? 14 HELX_P HELX_P9 9 ASP A 231 ? SER A 248 ? ASP A 216 SER A 233 1 ? 18 HELX_P HELX_P10 10 GLU A 262 ? LEU A 274 ? GLU A 247 LEU A 259 1 ? 13 HELX_P HELX_P11 11 ASN A 278 ? GLY A 295 ? ASN A 263 GLY A 280 1 ? 18 HELX_P HELX_P12 12 GLY A 322 ? LYS A 339 ? GLY A 307 LYS A 324 1 ? 18 HELX_P HELX_P13 13 ASN A 348 ? LEU A 352 ? ASN A 333 LEU A 337 5 ? 5 HELX_P HELX_P14 14 ASP A 353 ? GLU A 365 ? ASP A 338 GLU A 350 1 ? 13 HELX_P HELX_P15 15 GLU A 369 ? ILE A 373 ? GLU A 354 ILE A 358 5 ? 5 HELX_P HELX_P16 16 SER A 407 ? SER A 434 ? SER A 392 SER A 419 1 ? 28 HELX_P HELX_P17 17 ASN A 437 ? ASN A 451 ? ASN A 422 ASN A 436 1 ? 15 HELX_P HELX_P18 18 ASN A 457 ? ALA A 465 ? ASN A 442 ALA A 450 1 ? 9 HELX_P HELX_P19 19 PRO A 466 ? VAL A 470 ? PRO A 451 VAL A 455 5 ? 5 HELX_P HELX_P20 20 ARG A 477 ? SER A 481 ? ARG A 462 SER A 466 5 ? 5 HELX_P HELX_P21 21 GLY A 484 ? ASN A 497 ? GLY A 469 ASN A 482 1 ? 14 HELX_P HELX_P22 22 LYS A 508 ? ILE A 513 ? LYS A 493 ILE A 498 1 ? 6 HELX_P HELX_P23 23 GLU A 514 ? LYS A 516 ? GLU A 499 LYS A 501 5 ? 3 HELX_P HELX_P24 24 PRO A 518 ? LEU A 522 ? PRO A 503 LEU A 507 5 ? 5 HELX_P HELX_P25 25 THR A 526 ? SER A 532 ? THR A 511 SER A 517 1 ? 7 HELX_P HELX_P26 26 ASP A 537 ? ASP A 551 ? ASP A 522 ASP A 536 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A ASP 302 OD2 ? ? ? 1_555 B MN . MN ? ? A ASP 287 A MN 601 1_555 ? ? ? ? ? ? ? 2.642 ? metalc2 metalc ? ? B MN . MN ? ? ? 1_555 D HOH . O ? ? A MN 601 A HOH 763 1_555 ? ? ? ? ? ? ? 2.696 ? metalc3 metalc ? ? B MN . MN ? ? ? 1_555 C UDP . O2B ? ? A MN 601 A UDP 602 1_555 ? ? ? ? ? ? ? 2.583 ? metalc4 metalc ? ? B MN . MN ? ? ? 1_555 C UDP . O2A ? ? A MN 601 A UDP 602 1_555 ? ? ? ? ? ? ? 2.632 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 105 ? PRO A 107 ? THR A 90 PRO A 92 A 2 ASN A 381 ? SER A 383 ? ASN A 366 SER A 368 B 1 GLY A 251 ? ASP A 253 ? GLY A 236 ASP A 238 B 2 ASN A 140 ? TYR A 145 ? ASN A 125 TYR A 130 B 3 ASN A 111 ? VAL A 115 ? ASN A 96 VAL A 100 B 4 GLY A 296 ? LEU A 299 ? GLY A 281 LEU A 284 B 5 SER A 395 ? SER A 403 ? SER A 380 SER A 388 B 6 ILE A 387 ? ALA A 392 ? ILE A 372 ALA A 377 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 106 ? N SER A 91 O VAL A 382 ? O VAL A 367 B 1 2 O ILE A 252 ? O ILE A 237 N LEU A 143 ? N LEU A 128 B 2 3 O TRP A 144 ? O TRP A 129 N PHE A 114 ? N PHE A 99 B 3 4 N HIS A 113 ? N HIS A 98 O VAL A 297 ? O VAL A 282 B 4 5 N GLY A 296 ? N GLY A 281 O SER A 403 ? O SER A 388 B 5 6 O SER A 395 ? O SER A 380 N ALA A 392 ? N ALA A 377 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MN A 601' AC2 Software ? ? ? ? 12 'BINDING SITE FOR RESIDUE UDP A 602' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASP A 302 ? ASP A 287 . ? 1_555 ? 2 AC1 4 GLU A 529 ? GLU A 514 . ? 1_555 ? 3 AC1 4 UDP C . ? UDP A 602 . ? 1_555 ? 4 AC1 4 HOH D . ? HOH A 763 . ? 1_555 ? 5 AC2 12 VAL A 115 ? VAL A 100 . ? 1_555 ? 6 AC2 12 TRP A 116 ? TRP A 101 . ? 1_555 ? 7 AC2 12 ILE A 117 ? ILE A 102 . ? 1_555 ? 8 AC2 12 LEU A 279 ? LEU A 264 . ? 1_555 ? 9 AC2 12 SER A 283 ? SER A 268 . ? 1_555 ? 10 AC2 12 TYR A 298 ? TYR A 283 . ? 1_555 ? 11 AC2 12 ASP A 300 ? ASP A 285 . ? 1_555 ? 12 AC2 12 VAL A 301 ? VAL A 286 . ? 1_555 ? 13 AC2 12 ASP A 302 ? ASP A 287 . ? 1_555 ? 14 AC2 12 SER A 532 ? SER A 517 . ? 1_555 ? 15 AC2 12 MN B . ? MN A 601 . ? 1_555 ? 16 AC2 12 HOH D . ? HOH A 719 . ? 1_555 ? # _atom_sites.entry_id 4DMW _atom_sites.fract_transf_matrix[1][1] 0.015002 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006380 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015209 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -14 ? ? ? A . n A 1 2 ALA 2 -13 ? ? ? A . n A 1 3 HIS 3 -12 ? ? ? A . n A 1 4 HIS 4 -11 ? ? ? A . n A 1 5 HIS 5 -10 ? ? ? A . n A 1 6 HIS 6 -9 ? ? ? A . n A 1 7 HIS 7 -8 ? ? ? A . n A 1 8 HIS 8 -7 ? ? ? A . n A 1 9 ASP 9 -6 ? ? ? A . n A 1 10 ASP 10 -5 ? ? ? A . n A 1 11 ASP 11 -4 ? ? ? A . n A 1 12 ASP 12 -3 ? ? ? A . n A 1 13 LYS 13 -2 ? ? ? A . n A 1 14 GLY 14 -1 ? ? ? A . n A 1 15 SER 15 0 ? ? ? A . n A 1 16 MET 16 1 ? ? ? A . n A 1 17 SER 17 2 2 SER SER A . n A 1 18 LEU 18 3 3 LEU LEU A . n A 1 19 ILE 19 4 4 ILE ILE A . n A 1 20 SER 20 5 5 SER SER A . n A 1 21 LYS 21 6 6 LYS LYS A . n A 1 22 GLU 22 7 7 GLU GLU A . n A 1 23 GLU 23 8 8 GLU GLU A . n A 1 24 LEU 24 9 9 LEU LEU A . n A 1 25 ILE 25 10 10 ILE ILE A . n A 1 26 LYS 26 11 11 LYS LYS A . n A 1 27 LEU 27 12 12 LEU LEU A . n A 1 28 ALA 28 13 13 ALA ALA A . n A 1 29 TYR 29 14 14 TYR TYR A . n A 1 30 SER 30 15 15 SER SER A . n A 1 31 ILE 31 16 16 ILE ILE A . n A 1 32 ARG 32 17 17 ARG ARG A . n A 1 33 PRO 33 18 18 PRO PRO A . n A 1 34 ARG 34 19 19 ARG ARG A . n A 1 35 GLU 35 20 20 GLU GLU A . n A 1 36 ASN 36 21 21 ASN ASN A . n A 1 37 GLU 37 22 22 GLU GLU A . n A 1 38 TYR 38 23 23 TYR TYR A . n A 1 39 LYS 39 24 24 LYS LYS A . n A 1 40 THR 40 25 25 THR THR A . n A 1 41 ILE 41 26 26 ILE ILE A . n A 1 42 LEU 42 27 27 LEU LEU A . n A 1 43 THR 43 28 28 THR THR A . n A 1 44 ASN 44 29 29 ASN ASN A . n A 1 45 LEU 45 30 30 LEU LEU A . n A 1 46 ASP 46 31 31 ASP ASP A . n A 1 47 GLU 47 32 32 GLU GLU A . n A 1 48 TYR 48 33 33 TYR TYR A . n A 1 49 ASN 49 34 34 ASN ASN A . n A 1 50 LYS 50 35 35 LYS LYS A . n A 1 51 LEU 51 36 36 LEU LEU A . n A 1 52 THR 52 37 37 THR THR A . n A 1 53 THR 53 38 38 THR THR A . n A 1 54 ASN 54 39 39 ASN ASN A . n A 1 55 ASN 55 40 40 ASN ASN A . n A 1 56 ASN 56 41 41 ASN ASN A . n A 1 57 GLU 57 42 42 GLU GLU A . n A 1 58 ASN 58 43 43 ASN ASN A . n A 1 59 LYS 59 44 44 LYS LYS A . n A 1 60 TYR 60 45 45 TYR TYR A . n A 1 61 LEU 61 46 46 LEU LEU A . n A 1 62 GLN 62 47 47 GLN GLN A . n A 1 63 LEU 63 48 48 LEU LEU A . n A 1 64 LYS 64 49 49 LYS LYS A . n A 1 65 LYS 65 50 50 LYS LYS A . n A 1 66 LEU 66 51 51 LEU LEU A . n A 1 67 ASN 67 52 52 ASN ASN A . n A 1 68 GLU 68 53 53 GLU GLU A . n A 1 69 SER 69 54 54 SER SER A . n A 1 70 ILE 70 55 55 ILE ILE A . n A 1 71 ASP 71 56 56 ASP ASP A . n A 1 72 VAL 72 57 57 VAL VAL A . n A 1 73 PHE 73 58 58 PHE PHE A . n A 1 74 MET 74 59 59 MET MET A . n A 1 75 ASN 75 60 60 ASN ASN A . n A 1 76 LYS 76 61 61 LYS LYS A . n A 1 77 TYR 77 62 62 TYR TYR A . n A 1 78 LYS 78 63 63 LYS LYS A . n A 1 79 THR 79 64 64 THR THR A . n A 1 80 SER 80 65 65 SER SER A . n A 1 81 SER 81 66 66 SER SER A . n A 1 82 ARG 82 67 67 ARG ARG A . n A 1 83 ASN 83 68 68 ASN ASN A . n A 1 84 ARG 84 69 69 ARG ARG A . n A 1 85 ALA 85 70 70 ALA ALA A . n A 1 86 LEU 86 71 71 LEU LEU A . n A 1 87 SER 87 72 72 SER SER A . n A 1 88 ASN 88 73 73 ASN ASN A . n A 1 89 LEU 89 74 74 LEU LEU A . n A 1 90 LYS 90 75 75 LYS LYS A . n A 1 91 LYS 91 76 76 LYS LYS A . n A 1 92 ASP 92 77 77 ASP ASP A . n A 1 93 ILE 93 78 78 ILE ILE A . n A 1 94 LEU 94 79 79 LEU LEU A . n A 1 95 LYS 95 80 80 LYS LYS A . n A 1 96 GLU 96 81 81 GLU GLU A . n A 1 97 VAL 97 82 82 VAL VAL A . n A 1 98 ILE 98 83 83 ILE ILE A . n A 1 99 LEU 99 84 84 LEU LEU A . n A 1 100 ILE 100 85 85 ILE ILE A . n A 1 101 LYS 101 86 86 LYS LYS A . n A 1 102 ASN 102 87 87 ASN ASN A . n A 1 103 SER 103 88 88 SER SER A . n A 1 104 ASN 104 89 89 ASN ASN A . n A 1 105 THR 105 90 90 THR THR A . n A 1 106 SER 106 91 91 SER SER A . n A 1 107 PRO 107 92 92 PRO PRO A . n A 1 108 VAL 108 93 93 VAL VAL A . n A 1 109 GLU 109 94 94 GLU GLU A . n A 1 110 LYS 110 95 95 LYS LYS A . n A 1 111 ASN 111 96 96 ASN ASN A . n A 1 112 LEU 112 97 97 LEU LEU A . n A 1 113 HIS 113 98 98 HIS HIS A . n A 1 114 PHE 114 99 99 PHE PHE A . n A 1 115 VAL 115 100 100 VAL VAL A . n A 1 116 TRP 116 101 101 TRP TRP A . n A 1 117 ILE 117 102 102 ILE ILE A . n A 1 118 GLY 118 103 103 GLY GLY A . n A 1 119 GLY 119 104 104 GLY GLY A . n A 1 120 GLU 120 105 105 GLU GLU A . n A 1 121 VAL 121 106 106 VAL VAL A . n A 1 122 SER 122 107 107 SER SER A . n A 1 123 ASP 123 108 108 ASP ASP A . n A 1 124 ILE 124 109 109 ILE ILE A . n A 1 125 ALA 125 110 110 ALA ALA A . n A 1 126 LEU 126 111 111 LEU LEU A . n A 1 127 GLU 127 112 112 GLU GLU A . n A 1 128 TYR 128 113 113 TYR TYR A . n A 1 129 ILE 129 114 114 ILE ILE A . n A 1 130 LYS 130 115 115 LYS LYS A . n A 1 131 GLN 131 116 116 GLN GLN A . n A 1 132 TRP 132 117 117 TRP TRP A . n A 1 133 ALA 133 118 118 ALA ALA A . n A 1 134 ASP 134 119 119 ASP ASP A . n A 1 135 ILE 135 120 120 ILE ILE A . n A 1 136 ASN 136 121 121 ASN ASN A . n A 1 137 ALA 137 122 122 ALA ALA A . n A 1 138 GLU 138 123 123 GLU GLU A . n A 1 139 TYR 139 124 124 TYR TYR A . n A 1 140 ASN 140 125 125 ASN ASN A . n A 1 141 ILE 141 126 126 ILE ILE A . n A 1 142 LYS 142 127 127 LYS LYS A . n A 1 143 LEU 143 128 128 LEU LEU A . n A 1 144 TRP 144 129 129 TRP TRP A . n A 1 145 TYR 145 130 130 TYR TYR A . n A 1 146 ASP 146 131 131 ASP ASP A . n A 1 147 SER 147 132 132 SER SER A . n A 1 148 GLU 148 133 133 GLU GLU A . n A 1 149 ALA 149 134 134 ALA ALA A . n A 1 150 PHE 150 135 135 PHE PHE A . n A 1 151 LEU 151 136 136 LEU LEU A . n A 1 152 VAL 152 137 137 VAL VAL A . n A 1 153 ASN 153 138 138 ASN ASN A . n A 1 154 THR 154 139 139 THR THR A . n A 1 155 LEU 155 140 140 LEU LEU A . n A 1 156 LYS 156 141 141 LYS LYS A . n A 1 157 LYS 157 142 142 LYS LYS A . n A 1 158 ALA 158 143 143 ALA ALA A . n A 1 159 ILE 159 144 144 ILE ILE A . n A 1 160 VAL 160 145 145 VAL VAL A . n A 1 161 GLU 161 146 146 GLU GLU A . n A 1 162 SER 162 147 147 SER SER A . n A 1 163 SER 163 148 148 SER SER A . n A 1 164 THR 164 149 149 THR THR A . n A 1 165 THR 165 150 150 THR THR A . n A 1 166 GLU 166 151 151 GLU GLU A . n A 1 167 ALA 167 152 152 ALA ALA A . n A 1 168 LEU 168 153 153 LEU LEU A . n A 1 169 GLN 169 154 154 GLN GLN A . n A 1 170 LEU 170 155 155 LEU LEU A . n A 1 171 LEU 171 156 156 LEU LEU A . n A 1 172 GLU 172 157 157 GLU GLU A . n A 1 173 GLU 173 158 158 GLU GLU A . n A 1 174 GLU 174 159 159 GLU GLU A . n A 1 175 ILE 175 160 160 ILE ILE A . n A 1 176 GLN 176 161 161 GLN GLN A . n A 1 177 ASN 177 162 162 ASN ASN A . n A 1 178 PRO 178 163 163 PRO PRO A . n A 1 179 GLN 179 164 164 GLN GLN A . n A 1 180 PHE 180 165 165 PHE PHE A . n A 1 181 ASP 181 166 166 ASP ASP A . n A 1 182 ASN 182 167 167 ASN ASN A . n A 1 183 MET 183 168 168 MET MET A . n A 1 184 LYS 184 169 169 LYS LYS A . n A 1 185 PHE 185 170 170 PHE PHE A . n A 1 186 TYR 186 171 171 TYR TYR A . n A 1 187 LYS 187 172 172 LYS LYS A . n A 1 188 LYS 188 173 173 LYS LYS A . n A 1 189 ARG 189 174 174 ARG ARG A . n A 1 190 MET 190 175 175 MET MET A . n A 1 191 GLU 191 176 176 GLU GLU A . n A 1 192 PHE 192 177 177 PHE PHE A . n A 1 193 ILE 193 178 178 ILE ILE A . n A 1 194 TYR 194 179 179 TYR TYR A . n A 1 195 ASP 195 180 180 ASP ASP A . n A 1 196 ARG 196 181 181 ARG ARG A . n A 1 197 GLN 197 182 182 GLN GLN A . n A 1 198 LYS 198 183 183 LYS LYS A . n A 1 199 ARG 199 184 184 ARG ARG A . n A 1 200 PHE 200 185 185 PHE PHE A . n A 1 201 ILE 201 186 186 ILE ILE A . n A 1 202 ASN 202 187 187 ASN ASN A . n A 1 203 TYR 203 188 188 TYR TYR A . n A 1 204 TYR 204 189 189 TYR TYR A . n A 1 205 LYS 205 190 190 LYS LYS A . n A 1 206 SER 206 191 191 SER SER A . n A 1 207 GLN 207 192 192 GLN GLN A . n A 1 208 ILE 208 193 193 ILE ILE A . n A 1 209 ASN 209 194 194 ASN ASN A . n A 1 210 LYS 210 195 195 LYS LYS A . n A 1 211 PRO 211 196 ? ? ? A . n A 1 212 THR 212 197 ? ? ? A . n A 1 213 VAL 213 198 198 VAL VAL A . n A 1 214 PRO 214 199 199 PRO PRO A . n A 1 215 THR 215 200 200 THR THR A . n A 1 216 ILE 216 201 201 ILE ILE A . n A 1 217 ASP 217 202 202 ASP ASP A . n A 1 218 ASP 218 203 203 ASP ASP A . n A 1 219 ILE 219 204 204 ILE ILE A . n A 1 220 ILE 220 205 205 ILE ILE A . n A 1 221 LYS 221 206 206 LYS LYS A . n A 1 222 SER 222 207 207 SER SER A . n A 1 223 HIS 223 208 208 HIS HIS A . n A 1 224 LEU 224 209 209 LEU LEU A . n A 1 225 VAL 225 210 210 VAL VAL A . n A 1 226 SER 226 211 211 SER SER A . n A 1 227 GLU 227 212 212 GLU GLU A . n A 1 228 TYR 228 213 213 TYR TYR A . n A 1 229 ASN 229 214 214 ASN ASN A . n A 1 230 ARG 230 215 215 ARG ARG A . n A 1 231 ASP 231 216 216 ASP ASP A . n A 1 232 GLU 232 217 217 GLU GLU A . n A 1 233 THR 233 218 218 THR THR A . n A 1 234 VAL 234 219 219 VAL VAL A . n A 1 235 LEU 235 220 220 LEU LEU A . n A 1 236 GLU 236 221 221 GLU GLU A . n A 1 237 SER 237 222 222 SER SER A . n A 1 238 TYR 238 223 223 TYR TYR A . n A 1 239 ARG 239 224 224 ARG ARG A . n A 1 240 THR 240 225 225 THR THR A . n A 1 241 ASN 241 226 226 ASN ASN A . n A 1 242 SER 242 227 227 SER SER A . n A 1 243 LEU 243 228 228 LEU LEU A . n A 1 244 ARG 244 229 229 ARG ARG A . n A 1 245 LYS 245 230 230 LYS LYS A . n A 1 246 ILE 246 231 231 ILE ILE A . n A 1 247 ASN 247 232 232 ASN ASN A . n A 1 248 SER 248 233 233 SER SER A . n A 1 249 ASN 249 234 234 ASN ASN A . n A 1 250 HIS 250 235 235 HIS HIS A . n A 1 251 GLY 251 236 236 GLY GLY A . n A 1 252 ILE 252 237 237 ILE ILE A . n A 1 253 ASP 253 238 238 ASP ASP A . n A 1 254 ILE 254 239 239 ILE ILE A . n A 1 255 ARG 255 240 240 ARG ARG A . n A 1 256 ALA 256 241 241 ALA ALA A . n A 1 257 ASN 257 242 242 ASN ASN A . n A 1 258 SER 258 243 243 SER SER A . n A 1 259 LEU 259 244 244 LEU LEU A . n A 1 260 PHE 260 245 245 PHE PHE A . n A 1 261 THR 261 246 246 THR THR A . n A 1 262 GLU 262 247 247 GLU GLU A . n A 1 263 GLN 263 248 248 GLN GLN A . n A 1 264 GLU 264 249 249 GLU GLU A . n A 1 265 LEU 265 250 250 LEU LEU A . n A 1 266 LEU 266 251 251 LEU LEU A . n A 1 267 ASN 267 252 252 ASN ASN A . n A 1 268 ILE 268 253 253 ILE ILE A . n A 1 269 TYR 269 254 254 TYR TYR A . n A 1 270 SER 270 255 255 SER SER A . n A 1 271 GLN 271 256 256 GLN GLN A . n A 1 272 GLU 272 257 257 GLU GLU A . n A 1 273 LEU 273 258 258 LEU LEU A . n A 1 274 LEU 274 259 259 LEU LEU A . n A 1 275 ASN 275 260 260 ASN ASN A . n A 1 276 ARG 276 261 261 ARG ARG A . n A 1 277 GLY 277 262 262 GLY GLY A . n A 1 278 ASN 278 263 263 ASN ASN A . n A 1 279 LEU 279 264 264 LEU LEU A . n A 1 280 ALA 280 265 265 ALA ALA A . n A 1 281 ALA 281 266 266 ALA ALA A . n A 1 282 ALA 282 267 267 ALA ALA A . n A 1 283 SER 283 268 268 SER SER A . n A 1 284 ASP 284 269 269 ASP ASP A . n A 1 285 ILE 285 270 270 ILE ILE A . n A 1 286 VAL 286 271 271 VAL VAL A . n A 1 287 ARG 287 272 272 ARG ARG A . n A 1 288 LEU 288 273 273 LEU LEU A . n A 1 289 LEU 289 274 274 LEU LEU A . n A 1 290 ALA 290 275 275 ALA ALA A . n A 1 291 LEU 291 276 276 LEU LEU A . n A 1 292 LYS 292 277 277 LYS LYS A . n A 1 293 ASN 293 278 278 ASN ASN A . n A 1 294 PHE 294 279 279 PHE PHE A . n A 1 295 GLY 295 280 280 GLY GLY A . n A 1 296 GLY 296 281 281 GLY GLY A . n A 1 297 VAL 297 282 282 VAL VAL A . n A 1 298 TYR 298 283 283 TYR TYR A . n A 1 299 LEU 299 284 284 LEU LEU A . n A 1 300 ASP 300 285 285 ASP ASP A . n A 1 301 VAL 301 286 286 VAL VAL A . n A 1 302 ASP 302 287 287 ASP ASP A . n A 1 303 MET 303 288 288 MET MET A . n A 1 304 LEU 304 289 289 LEU LEU A . n A 1 305 PRO 305 290 290 PRO PRO A . n A 1 306 GLY 306 291 291 GLY GLY A . n A 1 307 ILE 307 292 292 ILE ILE A . n A 1 308 HIS 308 293 293 HIS HIS A . n A 1 309 SER 309 294 294 SER SER A . n A 1 310 ASP 310 295 295 ASP ASP A . n A 1 311 LEU 311 296 296 LEU LEU A . n A 1 312 PHE 312 297 297 PHE PHE A . n A 1 313 LYS 313 298 298 LYS LYS A . n A 1 314 THR 314 299 299 THR THR A . n A 1 315 ILE 315 300 300 ILE ILE A . n A 1 316 SER 316 301 301 SER SER A . n A 1 317 ARG 317 302 302 ARG ARG A . n A 1 318 PRO 318 303 303 PRO PRO A . n A 1 319 SER 319 304 304 SER SER A . n A 1 320 SER 320 305 305 SER SER A . n A 1 321 ILE 321 306 306 ILE ILE A . n A 1 322 GLY 322 307 307 GLY GLY A . n A 1 323 LEU 323 308 308 LEU LEU A . n A 1 324 ASP 324 309 309 ASP ASP A . n A 1 325 ARG 325 310 310 ARG ARG A . n A 1 326 TRP 326 311 311 TRP TRP A . n A 1 327 GLU 327 312 312 GLU GLU A . n A 1 328 MET 328 313 313 MET MET A . n A 1 329 ILE 329 314 314 ILE ILE A . n A 1 330 LYS 330 315 315 LYS LYS A . n A 1 331 LEU 331 316 316 LEU LEU A . n A 1 332 GLU 332 317 317 GLU GLU A . n A 1 333 ALA 333 318 318 ALA ALA A . n A 1 334 ILE 334 319 319 ILE ILE A . n A 1 335 MET 335 320 320 MET MET A . n A 1 336 LYS 336 321 321 LYS LYS A . n A 1 337 TYR 337 322 322 TYR TYR A . n A 1 338 LYS 338 323 323 LYS LYS A . n A 1 339 LYS 339 324 324 LYS LYS A . n A 1 340 TYR 340 325 325 TYR TYR A . n A 1 341 ILE 341 326 326 ILE ILE A . n A 1 342 ASN 342 327 327 ASN ASN A . n A 1 343 ASN 343 328 328 ASN ASN A . n A 1 344 TYR 344 329 329 TYR TYR A . n A 1 345 THR 345 330 330 THR THR A . n A 1 346 SER 346 331 331 SER SER A . n A 1 347 GLU 347 332 332 GLU GLU A . n A 1 348 ASN 348 333 333 ASN ASN A . n A 1 349 PHE 349 334 334 PHE PHE A . n A 1 350 ASP 350 335 335 ASP ASP A . n A 1 351 LYS 351 336 336 LYS LYS A . n A 1 352 LEU 352 337 337 LEU LEU A . n A 1 353 ASP 353 338 338 ASP ASP A . n A 1 354 GLN 354 339 339 GLN GLN A . n A 1 355 GLN 355 340 340 GLN GLN A . n A 1 356 LEU 356 341 341 LEU LEU A . n A 1 357 LYS 357 342 342 LYS LYS A . n A 1 358 ASP 358 343 343 ASP ASP A . n A 1 359 ASN 359 344 344 ASN ASN A . n A 1 360 PHE 360 345 345 PHE PHE A . n A 1 361 LYS 361 346 346 LYS LYS A . n A 1 362 LEU 362 347 347 LEU LEU A . n A 1 363 ILE 363 348 348 ILE ILE A . n A 1 364 ILE 364 349 349 ILE ILE A . n A 1 365 GLU 365 350 350 GLU GLU A . n A 1 366 SER 366 351 351 SER SER A . n A 1 367 LYS 367 352 352 LYS LYS A . n A 1 368 SER 368 353 353 SER SER A . n A 1 369 GLU 369 354 354 GLU GLU A . n A 1 370 LYS 370 355 355 LYS LYS A . n A 1 371 SER 371 356 356 SER SER A . n A 1 372 GLU 372 357 357 GLU GLU A . n A 1 373 ILE 373 358 358 ILE ILE A . n A 1 374 PHE 374 359 359 PHE PHE A . n A 1 375 SER 375 360 360 SER SER A . n A 1 376 LYS 376 361 361 LYS LYS A . n A 1 377 LEU 377 362 362 LEU LEU A . n A 1 378 GLU 378 363 363 GLU GLU A . n A 1 379 ASN 379 364 364 ASN ASN A . n A 1 380 LEU 380 365 365 LEU LEU A . n A 1 381 ASN 381 366 366 ASN ASN A . n A 1 382 VAL 382 367 367 VAL VAL A . n A 1 383 SER 383 368 368 SER SER A . n A 1 384 ASP 384 369 369 ASP ASP A . n A 1 385 LEU 385 370 370 LEU LEU A . n A 1 386 GLU 386 371 371 GLU GLU A . n A 1 387 ILE 387 372 372 ILE ILE A . n A 1 388 LYS 388 373 373 LYS LYS A . n A 1 389 ILE 389 374 374 ILE ILE A . n A 1 390 ALA 390 375 375 ALA ALA A . n A 1 391 PHE 391 376 376 PHE PHE A . n A 1 392 ALA 392 377 377 ALA ALA A . n A 1 393 LEU 393 378 378 LEU LEU A . n A 1 394 GLY 394 379 379 GLY GLY A . n A 1 395 SER 395 380 380 SER SER A . n A 1 396 VAL 396 381 381 VAL VAL A . n A 1 397 ILE 397 382 382 ILE ILE A . n A 1 398 ASN 398 383 383 ASN ASN A . n A 1 399 GLN 399 384 384 GLN GLN A . n A 1 400 ALA 400 385 385 ALA ALA A . n A 1 401 LEU 401 386 386 LEU LEU A . n A 1 402 ILE 402 387 387 ILE ILE A . n A 1 403 SER 403 388 388 SER SER A . n A 1 404 LYS 404 389 389 LYS LYS A . n A 1 405 GLN 405 390 390 GLN GLN A . n A 1 406 GLY 406 391 391 GLY GLY A . n A 1 407 SER 407 392 392 SER SER A . n A 1 408 TYR 408 393 393 TYR TYR A . n A 1 409 LEU 409 394 394 LEU LEU A . n A 1 410 THR 410 395 395 THR THR A . n A 1 411 ASN 411 396 396 ASN ASN A . n A 1 412 LEU 412 397 397 LEU LEU A . n A 1 413 VAL 413 398 398 VAL VAL A . n A 1 414 ILE 414 399 399 ILE ILE A . n A 1 415 GLU 415 400 400 GLU GLU A . n A 1 416 GLN 416 401 401 GLN GLN A . n A 1 417 VAL 417 402 402 VAL VAL A . n A 1 418 LYS 418 403 403 LYS LYS A . n A 1 419 ASN 419 404 404 ASN ASN A . n A 1 420 ARG 420 405 405 ARG ARG A . n A 1 421 TYR 421 406 406 TYR TYR A . n A 1 422 GLN 422 407 407 GLN GLN A . n A 1 423 PHE 423 408 408 PHE PHE A . n A 1 424 LEU 424 409 409 LEU LEU A . n A 1 425 ASN 425 410 410 ASN ASN A . n A 1 426 GLN 426 411 411 GLN GLN A . n A 1 427 HIS 427 412 412 HIS HIS A . n A 1 428 LEU 428 413 413 LEU LEU A . n A 1 429 ASN 429 414 414 ASN ASN A . n A 1 430 PRO 430 415 415 PRO PRO A . n A 1 431 ALA 431 416 416 ALA ALA A . n A 1 432 ILE 432 417 417 ILE ILE A . n A 1 433 GLU 433 418 418 GLU GLU A . n A 1 434 SER 434 419 419 SER SER A . n A 1 435 ASP 435 420 420 ASP ASP A . n A 1 436 ASN 436 421 421 ASN ASN A . n A 1 437 ASN 437 422 422 ASN ASN A . n A 1 438 PHE 438 423 423 PHE PHE A . n A 1 439 THR 439 424 424 THR THR A . n A 1 440 ASP 440 425 425 ASP ASP A . n A 1 441 THR 441 426 426 THR THR A . n A 1 442 THR 442 427 427 THR THR A . n A 1 443 LYS 443 428 428 LYS LYS A . n A 1 444 ILE 444 429 429 ILE ILE A . n A 1 445 PHE 445 430 430 PHE PHE A . n A 1 446 HIS 446 431 431 HIS HIS A . n A 1 447 ASP 447 432 432 ASP ASP A . n A 1 448 SER 448 433 433 SER SER A . n A 1 449 LEU 449 434 434 LEU LEU A . n A 1 450 PHE 450 435 435 PHE PHE A . n A 1 451 ASN 451 436 436 ASN ASN A . n A 1 452 SER 452 437 437 SER SER A . n A 1 453 ALA 453 438 438 ALA ALA A . n A 1 454 THR 454 439 439 THR THR A . n A 1 455 ALA 455 440 440 ALA ALA A . n A 1 456 GLU 456 441 441 GLU GLU A . n A 1 457 ASN 457 442 442 ASN ASN A . n A 1 458 SER 458 443 443 SER SER A . n A 1 459 MET 459 444 444 MET MET A . n A 1 460 PHE 460 445 445 PHE PHE A . n A 1 461 LEU 461 446 446 LEU LEU A . n A 1 462 THR 462 447 447 THR THR A . n A 1 463 LYS 463 448 448 LYS LYS A . n A 1 464 ILE 464 449 449 ILE ILE A . n A 1 465 ALA 465 450 450 ALA ALA A . n A 1 466 PRO 466 451 451 PRO PRO A . n A 1 467 TYR 467 452 452 TYR TYR A . n A 1 468 LEU 468 453 453 LEU LEU A . n A 1 469 GLN 469 454 454 GLN GLN A . n A 1 470 VAL 470 455 455 VAL VAL A . n A 1 471 GLY 471 456 456 GLY GLY A . n A 1 472 PHE 472 457 457 PHE PHE A . n A 1 473 MET 473 458 458 MET MET A . n A 1 474 PRO 474 459 459 PRO PRO A . n A 1 475 GLU 475 460 460 GLU GLU A . n A 1 476 ALA 476 461 461 ALA ALA A . n A 1 477 ARG 477 462 462 ARG ARG A . n A 1 478 SER 478 463 463 SER SER A . n A 1 479 THR 479 464 464 THR THR A . n A 1 480 ILE 480 465 465 ILE ILE A . n A 1 481 SER 481 466 466 SER SER A . n A 1 482 LEU 482 467 467 LEU LEU A . n A 1 483 SER 483 468 468 SER SER A . n A 1 484 GLY 484 469 469 GLY GLY A . n A 1 485 PRO 485 470 470 PRO PRO A . n A 1 486 GLY 486 471 471 GLY GLY A . n A 1 487 ALA 487 472 472 ALA ALA A . n A 1 488 TYR 488 473 473 TYR TYR A . n A 1 489 ALA 489 474 474 ALA ALA A . n A 1 490 SER 490 475 475 SER SER A . n A 1 491 ALA 491 476 476 ALA ALA A . n A 1 492 TYR 492 477 477 TYR TYR A . n A 1 493 TYR 493 478 478 TYR TYR A . n A 1 494 ASP 494 479 479 ASP ASP A . n A 1 495 PHE 495 480 480 PHE PHE A . n A 1 496 ILE 496 481 481 ILE ILE A . n A 1 497 ASN 497 482 482 ASN ASN A . n A 1 498 LEU 498 483 483 LEU LEU A . n A 1 499 GLN 499 484 484 GLN GLN A . n A 1 500 GLU 500 485 485 GLU GLU A . n A 1 501 ASN 501 486 486 ASN ASN A . n A 1 502 THR 502 487 487 THR THR A . n A 1 503 ILE 503 488 488 ILE ILE A . n A 1 504 GLU 504 489 489 GLU GLU A . n A 1 505 LYS 505 490 490 LYS LYS A . n A 1 506 THR 506 491 491 THR THR A . n A 1 507 LEU 507 492 492 LEU LEU A . n A 1 508 LYS 508 493 493 LYS LYS A . n A 1 509 ALA 509 494 494 ALA ALA A . n A 1 510 SER 510 495 495 SER SER A . n A 1 511 ASP 511 496 496 ASP ASP A . n A 1 512 LEU 512 497 497 LEU LEU A . n A 1 513 ILE 513 498 498 ILE ILE A . n A 1 514 GLU 514 499 499 GLU GLU A . n A 1 515 PHE 515 500 500 PHE PHE A . n A 1 516 LYS 516 501 501 LYS LYS A . n A 1 517 PHE 517 502 502 PHE PHE A . n A 1 518 PRO 518 503 503 PRO PRO A . n A 1 519 GLU 519 504 504 GLU GLU A . n A 1 520 ASN 520 505 505 ASN ASN A . n A 1 521 ASN 521 506 506 ASN ASN A . n A 1 522 LEU 522 507 507 LEU LEU A . n A 1 523 SER 523 508 508 SER SER A . n A 1 524 GLN 524 509 509 GLN GLN A . n A 1 525 LEU 525 510 510 LEU LEU A . n A 1 526 THR 526 511 511 THR THR A . n A 1 527 GLU 527 512 512 GLU GLU A . n A 1 528 GLN 528 513 513 GLN GLN A . n A 1 529 GLU 529 514 514 GLU GLU A . n A 1 530 ILE 530 515 515 ILE ILE A . n A 1 531 ASN 531 516 516 ASN ASN A . n A 1 532 SER 532 517 517 SER SER A . n A 1 533 LEU 533 518 518 LEU LEU A . n A 1 534 TRP 534 519 519 TRP TRP A . n A 1 535 SER 535 520 520 SER SER A . n A 1 536 PHE 536 521 521 PHE PHE A . n A 1 537 ASP 537 522 522 ASP ASP A . n A 1 538 GLN 538 523 523 GLN GLN A . n A 1 539 ALA 539 524 524 ALA ALA A . n A 1 540 SER 540 525 525 SER SER A . n A 1 541 ALA 541 526 526 ALA ALA A . n A 1 542 LYS 542 527 527 LYS LYS A . n A 1 543 TYR 543 528 528 TYR TYR A . n A 1 544 GLN 544 529 529 GLN GLN A . n A 1 545 PHE 545 530 530 PHE PHE A . n A 1 546 GLU 546 531 531 GLU GLU A . n A 1 547 LYS 547 532 532 LYS LYS A . n A 1 548 TYR 548 533 533 TYR TYR A . n A 1 549 VAL 549 534 534 VAL VAL A . n A 1 550 ARG 550 535 535 ARG ARG A . n A 1 551 ASP 551 536 536 ASP ASP A . n A 1 552 TYR 552 537 537 TYR TYR A . n A 1 553 THR 553 538 538 THR THR A . n A 1 554 GLY 554 539 ? ? ? A . n A 1 555 GLY 555 540 ? ? ? A . n A 1 556 SER 556 541 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 302 ? A ASP 287 ? 1_555 MN ? B MN . ? A MN 601 ? 1_555 O ? D HOH . ? A HOH 763 ? 1_555 93.1 ? 2 OD2 ? A ASP 302 ? A ASP 287 ? 1_555 MN ? B MN . ? A MN 601 ? 1_555 O2B ? C UDP . ? A UDP 602 ? 1_555 141.5 ? 3 O ? D HOH . ? A HOH 763 ? 1_555 MN ? B MN . ? A MN 601 ? 1_555 O2B ? C UDP . ? A UDP 602 ? 1_555 118.1 ? 4 OD2 ? A ASP 302 ? A ASP 287 ? 1_555 MN ? B MN . ? A MN 601 ? 1_555 O2A ? C UDP . ? A UDP 602 ? 1_555 75.4 ? 5 O ? D HOH . ? A HOH 763 ? 1_555 MN ? B MN . ? A MN 601 ? 1_555 O2A ? C UDP . ? A UDP 602 ? 1_555 102.4 ? 6 O2B ? C UDP . ? A UDP 602 ? 1_555 MN ? B MN . ? A MN 601 ? 1_555 O2A ? C UDP . ? A UDP 602 ? 1_555 76.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-18 2 'Structure model' 1 1 2012-10-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 2 SCALA 3.3.20 2011/05/18 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 PHENIX 1.7.3_928 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MxCuBE . ? ? ? ? 'data collection' ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 8 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 720 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.08 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 13 ? ? -102.16 53.56 2 1 SER A 15 ? ? -171.83 147.69 3 1 THR A 38 ? ? -46.41 152.48 4 1 TYR A 62 ? ? -116.57 66.93 5 1 ASN A 121 ? ? -119.50 62.58 6 1 SER A 243 ? ? 48.64 73.50 7 1 LEU A 296 ? ? -23.81 -60.19 8 1 THR A 330 ? ? -46.64 150.90 9 1 GLU A 363 ? ? 51.63 -113.35 10 1 PRO A 451 ? ? -86.72 32.52 11 1 LEU A 510 ? ? -105.52 78.91 12 1 SER A 520 ? ? -151.47 24.70 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A SER 2 ? CB ? A SER 17 CB 2 1 Y 0 A SER 2 ? OG ? A SER 17 OG 3 1 Y 0 A GLU 112 ? CG ? A GLU 127 CG 4 1 Y 0 A GLU 112 ? CD ? A GLU 127 CD 5 1 Y 0 A GLU 112 ? OE1 ? A GLU 127 OE1 6 1 Y 0 A GLU 112 ? OE2 ? A GLU 127 OE2 7 1 Y 0 A GLN 164 ? CB ? A GLN 179 CB 8 1 Y 0 A GLN 164 ? CG ? A GLN 179 CG 9 1 Y 0 A GLN 164 ? CD ? A GLN 179 CD 10 1 Y 0 A GLN 164 ? OE1 ? A GLN 179 OE1 11 1 Y 0 A GLN 164 ? NE2 ? A GLN 179 NE2 12 1 Y 0 A ASP 216 ? CB ? A ASP 231 CB 13 1 Y 0 A ASP 216 ? CG ? A ASP 231 CG 14 1 Y 0 A ASP 216 ? OD1 ? A ASP 231 OD1 15 1 Y 0 A ASP 216 ? OD2 ? A ASP 231 OD2 16 1 Y 0 A ASP 295 ? CB ? A ASP 310 CB 17 1 Y 0 A ASP 295 ? CG ? A ASP 310 CG 18 1 Y 0 A ASP 295 ? OD1 ? A ASP 310 OD1 19 1 Y 0 A ASP 295 ? OD2 ? A ASP 310 OD2 20 1 Y 0 A ASP 338 ? CB ? A ASP 353 CB 21 1 Y 0 A ASP 338 ? CG ? A ASP 353 CG 22 1 Y 0 A ASP 338 ? OD1 ? A ASP 353 OD1 23 1 Y 0 A ASP 338 ? OD2 ? A ASP 353 OD2 24 1 Y 0 A GLU 363 ? CB ? A GLU 378 CB 25 1 Y 0 A GLU 363 ? CG ? A GLU 378 CG 26 1 Y 0 A GLU 363 ? CD ? A GLU 378 CD 27 1 Y 0 A GLU 363 ? OE1 ? A GLU 378 OE1 28 1 Y 0 A GLU 363 ? OE2 ? A GLU 378 OE2 29 1 Y 0 A GLU 504 ? CB ? A GLU 519 CB 30 1 Y 0 A GLU 504 ? CG ? A GLU 519 CG 31 1 Y 0 A GLU 504 ? CD ? A GLU 519 CD 32 1 Y 0 A GLU 504 ? OE1 ? A GLU 519 OE1 33 1 Y 0 A GLU 504 ? OE2 ? A GLU 519 OE2 34 1 Y 0 A GLN 523 ? CG ? A GLN 538 CG 35 1 Y 0 A GLN 523 ? CD ? A GLN 538 CD 36 1 Y 0 A GLN 523 ? OE1 ? A GLN 538 OE1 37 1 Y 0 A GLN 523 ? NE2 ? A GLN 538 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -14 ? A MET 1 2 1 Y 1 A ALA -13 ? A ALA 2 3 1 Y 1 A HIS -12 ? A HIS 3 4 1 Y 1 A HIS -11 ? A HIS 4 5 1 Y 1 A HIS -10 ? A HIS 5 6 1 Y 1 A HIS -9 ? A HIS 6 7 1 Y 1 A HIS -8 ? A HIS 7 8 1 Y 1 A HIS -7 ? A HIS 8 9 1 Y 1 A ASP -6 ? A ASP 9 10 1 Y 1 A ASP -5 ? A ASP 10 11 1 Y 1 A ASP -4 ? A ASP 11 12 1 Y 1 A ASP -3 ? A ASP 12 13 1 Y 1 A LYS -2 ? A LYS 13 14 1 Y 1 A GLY -1 ? A GLY 14 15 1 Y 1 A SER 0 ? A SER 15 16 1 Y 1 A MET 1 ? A MET 16 17 1 Y 1 A PRO 196 ? A PRO 211 18 1 Y 1 A THR 197 ? A THR 212 19 1 Y 1 A GLY 539 ? A GLY 554 20 1 Y 1 A GLY 540 ? A GLY 555 21 1 Y 1 A SER 541 ? A SER 556 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MANGANESE (II) ION' MN 3 "URIDINE-5'-DIPHOSPHATE" UDP 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN 1 601 601 MN MN A . C 3 UDP 1 602 602 UDP UDP A . D 4 HOH 1 701 701 HOH HOH A . D 4 HOH 2 702 702 HOH HOH A . D 4 HOH 3 703 703 HOH HOH A . D 4 HOH 4 704 704 HOH HOH A . D 4 HOH 5 705 705 HOH HOH A . D 4 HOH 6 706 706 HOH HOH A . D 4 HOH 7 707 707 HOH HOH A . D 4 HOH 8 708 708 HOH HOH A . D 4 HOH 9 709 709 HOH HOH A . D 4 HOH 10 710 710 HOH HOH A . D 4 HOH 11 711 711 HOH HOH A . D 4 HOH 12 712 712 HOH HOH A . D 4 HOH 13 713 713 HOH HOH A . D 4 HOH 14 714 714 HOH HOH A . D 4 HOH 15 715 715 HOH HOH A . D 4 HOH 16 716 716 HOH HOH A . D 4 HOH 17 717 717 HOH HOH A . D 4 HOH 18 718 718 HOH HOH A . D 4 HOH 19 719 719 HOH HOH A . D 4 HOH 20 720 720 HOH HOH A . D 4 HOH 21 721 721 HOH HOH A . D 4 HOH 22 722 722 HOH HOH A . D 4 HOH 23 723 723 HOH HOH A . D 4 HOH 24 724 724 HOH HOH A . D 4 HOH 25 725 725 HOH HOH A . D 4 HOH 26 726 726 HOH HOH A . D 4 HOH 27 727 727 HOH HOH A . D 4 HOH 28 728 728 HOH HOH A . D 4 HOH 29 729 729 HOH HOH A . D 4 HOH 30 730 730 HOH HOH A . D 4 HOH 31 731 731 HOH HOH A . D 4 HOH 32 732 732 HOH HOH A . D 4 HOH 33 733 733 HOH HOH A . D 4 HOH 34 734 734 HOH HOH A . D 4 HOH 35 735 735 HOH HOH A . D 4 HOH 36 736 736 HOH HOH A . D 4 HOH 37 737 737 HOH HOH A . D 4 HOH 38 738 738 HOH HOH A . D 4 HOH 39 739 739 HOH HOH A . D 4 HOH 40 740 740 HOH HOH A . D 4 HOH 41 741 741 HOH HOH A . D 4 HOH 42 742 742 HOH HOH A . D 4 HOH 43 743 743 HOH HOH A . D 4 HOH 44 744 744 HOH HOH A . D 4 HOH 45 745 745 HOH HOH A . D 4 HOH 46 746 746 HOH HOH A . D 4 HOH 47 747 747 HOH HOH A . D 4 HOH 48 748 748 HOH HOH A . D 4 HOH 49 749 749 HOH HOH A . D 4 HOH 50 750 750 HOH HOH A . D 4 HOH 51 751 751 HOH HOH A . D 4 HOH 52 752 752 HOH HOH A . D 4 HOH 53 753 753 HOH HOH A . D 4 HOH 54 754 754 HOH HOH A . D 4 HOH 55 755 755 HOH HOH A . D 4 HOH 56 756 756 HOH HOH A . D 4 HOH 57 757 757 HOH HOH A . D 4 HOH 58 758 758 HOH HOH A . D 4 HOH 59 759 759 HOH HOH A . D 4 HOH 60 760 760 HOH HOH A . D 4 HOH 61 761 761 HOH HOH A . D 4 HOH 62 762 762 HOH HOH A . D 4 HOH 63 763 763 HOH HOH A . D 4 HOH 64 764 764 HOH HOH A . D 4 HOH 65 765 765 HOH HOH A . #