HEADER OXIDOREDUCTASE 08-FEB-12 4DN9 TITLE CRYSTAL STRUCTURE OF PUTATIVE ANTIBIOTIC BIOSYNTHESIS MONOOXYGENASE TITLE 2 FROM CHLOROFLEXUS AURANTIACUS J-10-FL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBIOTIC BIOSYNTHESIS MONOOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLOROFLEXUS AURANTIACUS; SOURCE 3 ORGANISM_TAXID: 324602; SOURCE 4 STRAIN: J-10-FL; SOURCE 5 GENE: CAUR_2443; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS,PROTEIN STRUCTURE INITIATIVE, NEW YORK STRUCTURAL KEYWDS 2 GENOMIX RESEARCH CONSORTIUM, NYSGRC, PSI-BIOLOGY, NEW YORK KEYWDS 3 STRUCTURAL GENOMICS RESEARCH CONSORTIUM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.BHOSLE,R.TORO,R.SEIDEL,S.C.ALMO,NEW YORK AUTHOR 2 STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 1 22-FEB-12 4DN9 0 JRNL AUTH V.N.MALASHKEVICH,R.BHOSLE,R.TORO,R.SEIDEL,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE ANTIBIOTIC BIOSYNTHESIS JRNL TITL 2 MONOOXYGENASE FROM CHLOROFLEXUS AURANTIACUS J-10-FL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 16479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 835 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 973 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.1720 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1434 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.334 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.779 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1500 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2048 ; 1.309 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 199 ; 5.335 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;25.500 ;24.615 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 213 ;12.622 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;18.068 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 233 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1118 ; 0.005 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1500 ; 3.348 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 46 ;32.107 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1521 ;16.407 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 47.8626 39.0221 29.2188 REMARK 3 T TENSOR REMARK 3 T11: 0.0129 T22: 0.0055 REMARK 3 T33: 0.0302 T12: -0.0038 REMARK 3 T13: -0.0012 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.5593 L22: 0.7519 REMARK 3 L33: 1.2740 L12: -0.1659 REMARK 3 L13: 0.1894 L23: -0.0524 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: 0.0421 S13: 0.0688 REMARK 3 S21: -0.0574 S22: -0.0147 S23: -0.0343 REMARK 3 S31: -0.0964 S32: 0.0510 S33: 0.0325 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 37.0358 46.4987 14.7868 REMARK 3 T TENSOR REMARK 3 T11: 0.0241 T22: 0.0045 REMARK 3 T33: 0.0421 T12: -0.0047 REMARK 3 T13: -0.0034 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.7160 L22: 0.7963 REMARK 3 L33: 2.1796 L12: -0.3893 REMARK 3 L13: 0.1849 L23: -0.2210 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: -0.0096 S13: 0.0926 REMARK 3 S21: 0.0192 S22: -0.0281 S23: -0.0260 REMARK 3 S31: -0.1410 S32: 0.0693 S33: 0.0296 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4DN9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-12. REMARK 100 THE RCSB ID CODE IS RCSB070541. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30159 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.88300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE, 0.1M MES:NAOH, REMARK 280 PH 6.5, 10% DIOXANE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.59550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.79775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.39325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 67.59550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 101.39325 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.79775 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 60.51100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 67.59550 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 321 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 ALA A 98 REMARK 465 ALA A 99 REMARK 465 ALA A 100 REMARK 465 MSE B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 97 REMARK 465 ALA B 98 REMARK 465 ALA B 99 REMARK 465 ALA B 100 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 94 CG HIS B 94 CD2 0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 28 16.78 48.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 346 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B 334 DISTANCE = 5.31 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-013101 RELATED DB: TARGETTRACK DBREF 4DN9 A 1 100 UNP A9WHE0 A9WHE0_CHLAA 1 100 DBREF 4DN9 B 1 100 UNP A9WHE0 A9WHE0_CHLAA 1 100 SEQADV 4DN9 MSE A -21 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 HIS A -20 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 HIS A -19 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 HIS A -18 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 HIS A -17 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 HIS A -16 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 HIS A -15 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 SER A -14 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 SER A -13 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 GLY A -12 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 VAL A -11 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 ASP A -10 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 LEU A -9 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 GLY A -8 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 THR A -7 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 GLU A -6 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 ASN A -5 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 LEU A -4 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 TYR A -3 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 PHE A -2 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 GLN A -1 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 SER A 0 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 MSE B -21 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 HIS B -20 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 HIS B -19 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 HIS B -18 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 HIS B -17 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 HIS B -16 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 HIS B -15 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 SER B -14 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 SER B -13 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 GLY B -12 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 VAL B -11 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 ASP B -10 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 LEU B -9 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 GLY B -8 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 THR B -7 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 GLU B -6 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 ASN B -5 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 LEU B -4 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 TYR B -3 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 PHE B -2 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 GLN B -1 UNP A9WHE0 EXPRESSION TAG SEQADV 4DN9 SER B 0 UNP A9WHE0 EXPRESSION TAG SEQRES 1 A 122 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 122 GLY THR GLU ASN LEU TYR PHE GLN SER MSE TYR GLY LEU SEQRES 3 A 122 ILE GLY LYS MSE ARG ALA THR PRO GLY GLN ARG ASP ALA SEQRES 4 A 122 LEU ILE ALA ILE LEU VAL GLU GLY ALA SER SER MSE PRO SEQRES 5 A 122 GLY CYS LEU SER TYR VAL VAL ALA GLN ASP PRO LYS ASP SEQRES 6 A 122 PRO ASP ALA ILE TRP ILE THR GLU VAL TRP ASP SER PRO SEQRES 7 A 122 GLU SER HIS LYS ALA SER LEU SER LEU PRO SER VAL GLN SEQRES 8 A 122 ASP ALA ILE ALA CYS GLY ARG PRO LEU ILE ALA ALA LEU SEQRES 9 A 122 ASP GLU HIS HIS GLU THR VAL PRO VAL GLY GLY HIS GLY SEQRES 10 A 122 ILE GLY ALA ALA ALA SEQRES 1 B 122 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 122 GLY THR GLU ASN LEU TYR PHE GLN SER MSE TYR GLY LEU SEQRES 3 B 122 ILE GLY LYS MSE ARG ALA THR PRO GLY GLN ARG ASP ALA SEQRES 4 B 122 LEU ILE ALA ILE LEU VAL GLU GLY ALA SER SER MSE PRO SEQRES 5 B 122 GLY CYS LEU SER TYR VAL VAL ALA GLN ASP PRO LYS ASP SEQRES 6 B 122 PRO ASP ALA ILE TRP ILE THR GLU VAL TRP ASP SER PRO SEQRES 7 B 122 GLU SER HIS LYS ALA SER LEU SER LEU PRO SER VAL GLN SEQRES 8 B 122 ASP ALA ILE ALA CYS GLY ARG PRO LEU ILE ALA ALA LEU SEQRES 9 B 122 ASP GLU HIS HIS GLU THR VAL PRO VAL GLY GLY HIS GLY SEQRES 10 B 122 ILE GLY ALA ALA ALA MODRES 4DN9 MSE A 1 MET SELENOMETHIONINE MODRES 4DN9 MSE A 8 MET SELENOMETHIONINE MODRES 4DN9 MSE A 29 MET SELENOMETHIONINE MODRES 4DN9 MSE B 1 MET SELENOMETHIONINE MODRES 4DN9 MSE B 8 MET SELENOMETHIONINE MODRES 4DN9 MSE B 29 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 8 8 HET MSE A 29 8 HET MSE B 1 8 HET MSE B 8 8 HET MSE B 29 8 HET DIO A 200 6 HET SO4 A 201 5 HET DIO B 200 6 HET SO4 B 201 5 HETNAM MSE SELENOMETHIONINE HETNAM DIO 1,4-DIETHYLENE DIOXIDE HETNAM SO4 SULFATE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 DIO 2(C4 H8 O2) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *102(H2 O) HELIX 1 1 GLN A 14 ALA A 26 1 13 HELIX 2 2 SER A 55 SER A 62 1 8 HELIX 3 3 LEU A 65 ARG A 76 1 12 HELIX 4 4 GLN B 14 ALA B 26 1 13 HELIX 5 5 SER B 55 SER B 64 1 10 HELIX 6 6 LEU B 65 ARG B 76 1 12 SHEET 1 A 9 TYR A 2 ALA A 10 0 SHEET 2 A 9 ASP A 43 TRP A 53 -1 O TRP A 53 N TYR A 2 SHEET 3 A 9 CYS A 32 ASP A 40 -1 N LEU A 33 O VAL A 52 SHEET 4 A 9 ILE B 79 HIS B 94 -1 O VAL B 89 N GLN A 39 SHEET 5 A 9 TYR B 2 ALA B 10 -1 N ILE B 5 O HIS B 86 SHEET 6 A 9 ASP B 43 TRP B 53 -1 O ILE B 49 N GLY B 6 SHEET 7 A 9 CYS B 32 ASP B 40 -1 N VAL B 36 O THR B 50 SHEET 8 A 9 ILE A 79 HIS A 94 -1 N VAL A 89 O GLN B 39 SHEET 9 A 9 TYR A 2 ALA A 10 -1 N ILE A 5 O HIS A 86 LINK C SER A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N TYR A 2 1555 1555 1.33 LINK C LYS A 7 N MSE A 8 1555 1555 1.33 LINK C MSE A 8 N ARG A 9 1555 1555 1.33 LINK C SER A 28 N MSE A 29 1555 1555 1.33 LINK C MSE A 29 N PRO A 30 1555 1555 1.36 LINK C SER B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N TYR B 2 1555 1555 1.33 LINK C LYS B 7 N MSE B 8 1555 1555 1.33 LINK C MSE B 8 N ARG B 9 1555 1555 1.33 LINK C SER B 28 N MSE B 29 1555 1555 1.33 LINK C MSE B 29 N PRO B 30 1555 1555 1.35 SITE 1 AC1 2 ILE A 79 HOH A 349 SITE 1 AC2 5 HIS A 94 GLY A 95 ILE A 96 GLY A 97 SITE 2 AC2 5 HOH A 367 SITE 1 AC3 2 MSE B 8 ILE B 79 SITE 1 AC4 3 GLY B 95 ILE B 96 HOH B 330 CRYST1 60.511 60.511 135.191 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016526 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007397 0.00000