data_4DNL # _entry.id 4DNL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4DNL pdb_00004dnl 10.2210/pdb4dnl/pdb RCSB RCSB070552 ? ? WWPDB D_1000070552 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-422958 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4DNL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-02-08 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Joint Center for Structural Genomics (JCSG)' 1 'Partnership for T-Cell Biology (TCELL)' 2 # _citation.id primary _citation.title 'Crystal structure of a C2 domain of a protein kinase C alpha (PRKCA) from Homo sapiens at 1.90 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Joint Center for Structural Genomics (JCSG)' 1 ? primary 'Partnership for T-Cell Biology (TCELL)' 2 ? # _cell.entry_id 4DNL _cell.length_a 58.035 _cell.length_b 58.035 _cell.length_c 88.714 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4DNL _symmetry.Int_Tables_number 154 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein kinase C alpha type' 16455.057 1 2.7.11.13 ? 'C2 domain residues 155-293' ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 water nat water 18.015 55 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PKC-A, PKC-alpha' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GHTEKRGRIYLKAEVADEKLHVTVRDAKNLIP(MSE)DPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF KLKPSDKDRRLSVEIWDWDRTTRNDF(MSE)GSLSFGVSEL(MSE)K(MSE)PASGWYKLLNQEEGEYYNVPIPEG ; _entity_poly.pdbx_seq_one_letter_code_can ;GHTEKRGRIYLKAEVADEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKP SDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEGEYYNVPIPEG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-422958 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 THR n 1 4 GLU n 1 5 LYS n 1 6 ARG n 1 7 GLY n 1 8 ARG n 1 9 ILE n 1 10 TYR n 1 11 LEU n 1 12 LYS n 1 13 ALA n 1 14 GLU n 1 15 VAL n 1 16 ALA n 1 17 ASP n 1 18 GLU n 1 19 LYS n 1 20 LEU n 1 21 HIS n 1 22 VAL n 1 23 THR n 1 24 VAL n 1 25 ARG n 1 26 ASP n 1 27 ALA n 1 28 LYS n 1 29 ASN n 1 30 LEU n 1 31 ILE n 1 32 PRO n 1 33 MSE n 1 34 ASP n 1 35 PRO n 1 36 ASN n 1 37 GLY n 1 38 LEU n 1 39 SER n 1 40 ASP n 1 41 PRO n 1 42 TYR n 1 43 VAL n 1 44 LYS n 1 45 LEU n 1 46 LYS n 1 47 LEU n 1 48 ILE n 1 49 PRO n 1 50 ASP n 1 51 PRO n 1 52 LYS n 1 53 ASN n 1 54 GLU n 1 55 SER n 1 56 LYS n 1 57 GLN n 1 58 LYS n 1 59 THR n 1 60 LYS n 1 61 THR n 1 62 ILE n 1 63 ARG n 1 64 SER n 1 65 THR n 1 66 LEU n 1 67 ASN n 1 68 PRO n 1 69 GLN n 1 70 TRP n 1 71 ASN n 1 72 GLU n 1 73 SER n 1 74 PHE n 1 75 THR n 1 76 PHE n 1 77 LYS n 1 78 LEU n 1 79 LYS n 1 80 PRO n 1 81 SER n 1 82 ASP n 1 83 LYS n 1 84 ASP n 1 85 ARG n 1 86 ARG n 1 87 LEU n 1 88 SER n 1 89 VAL n 1 90 GLU n 1 91 ILE n 1 92 TRP n 1 93 ASP n 1 94 TRP n 1 95 ASP n 1 96 ARG n 1 97 THR n 1 98 THR n 1 99 ARG n 1 100 ASN n 1 101 ASP n 1 102 PHE n 1 103 MSE n 1 104 GLY n 1 105 SER n 1 106 LEU n 1 107 SER n 1 108 PHE n 1 109 GLY n 1 110 VAL n 1 111 SER n 1 112 GLU n 1 113 LEU n 1 114 MSE n 1 115 LYS n 1 116 MSE n 1 117 PRO n 1 118 ALA n 1 119 SER n 1 120 GLY n 1 121 TRP n 1 122 TYR n 1 123 LYS n 1 124 LEU n 1 125 LEU n 1 126 ASN n 1 127 GLN n 1 128 GLU n 1 129 GLU n 1 130 GLY n 1 131 GLU n 1 132 TYR n 1 133 TYR n 1 134 ASN n 1 135 VAL n 1 136 PRO n 1 137 ILE n 1 138 PRO n 1 139 GLU n 1 140 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NM_002737, PKCA, PRKACA, PRKCA' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KPCA_HUMAN _struct_ref.pdbx_db_accession P17252 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;HTEKRGRIYLKAEVADEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPS DKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEGEYYNVPIPEG ; _struct_ref.pdbx_align_begin 155 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4DNL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 140 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P17252 _struct_ref_seq.db_align_beg 155 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 293 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 155 _struct_ref_seq.pdbx_auth_seq_align_end 293 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4DNL _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P17252 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4DNL # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.62 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 53.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '30.00% polyethylene glycol 6000, 0.1M sodium citrate pH 5.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.details 'KOHZU: Double Crystal Si(111)' _diffrn_detector.pdbx_collection_date 2011-10-15 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double Crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9464 1.0 2 0.9795 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_wavelength_list 0.9464,0.9795 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS # _reflns.entry_id 4DNL _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 29.571 _reflns.number_obs 14172 _reflns.pdbx_Rmerge_I_obs 0.047 _reflns.pdbx_netI_over_sigmaI 14.500 _reflns.percent_possible_obs 99.400 _reflns.B_iso_Wilson_estimate 37.326 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.900 1.970 9587 ? 2584 0.886 1.5 ? ? ? ? ? 95.900 1 1 1.970 2.050 10236 ? 2694 0.550 2.4 ? ? ? ? ? 99.700 2 1 2.050 2.140 9616 ? 2532 0.373 3.5 ? ? ? ? ? 99.900 3 1 2.140 2.250 9960 ? 2622 0.258 5.3 ? ? ? ? ? 100.000 4 1 2.250 2.390 9998 ? 2623 0.190 7.2 ? ? ? ? ? 99.900 5 1 2.390 2.580 10461 ? 2742 0.122 10.6 ? ? ? ? ? 99.900 6 1 2.580 2.840 9917 ? 2608 0.079 15.1 ? ? ? ? ? 100.000 7 1 2.840 3.250 9987 ? 2652 0.047 23.1 ? ? ? ? ? 99.800 8 1 3.250 4.080 9641 ? 2622 0.031 35.0 ? ? ? ? ? 99.700 9 1 4.080 ? 9760 ? 2673 0.025 40.6 ? ? ? ? ? 99.300 10 1 # _refine.entry_id 4DNL _refine.ls_d_res_high 1.9000 _refine.ls_d_res_low 29.571 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.9300 _refine.ls_number_reflns_obs 14132 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 6. SODIUM ION (NA) IS MODELED BASED ON ITS PRESENCE IN THE CRYSTALLLIZATION CONDITION AND GEOMETRY. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1883 _refine.ls_R_factor_R_work 0.1862 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2303 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 709 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 57.0174 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.1400 _refine.aniso_B[2][2] -0.1400 _refine.aniso_B[3][3] 0.2100 _refine.aniso_B[1][2] -0.0700 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9640 _refine.correlation_coeff_Fo_to_Fc_free 0.9520 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.1340 _refine.pdbx_overall_ESU_R_Free 0.1330 _refine.overall_SU_ML 0.0960 _refine.overall_SU_B 6.6890 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 119.490 _refine.B_iso_min 34.880 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.150 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1109 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 55 _refine_hist.number_atoms_total 1165 _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 29.571 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1168 0.012 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 831 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1589 1.566 1.978 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2035 0.898 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 146 6.685 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 55 33.068 24.545 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 217 14.614 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 8 13.378 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 169 0.096 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1287 0.007 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 229 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.9000 _refine_ls_shell.d_res_low 1.9490 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.8900 _refine_ls_shell.number_reflns_R_work 875 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2450 _refine_ls_shell.R_factor_R_free 0.2650 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 44 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 919 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4DNL _struct.title 'Crystal structure of a C2 domain of a protein kinase C alpha (PRKCA) from Homo sapiens at 1.90 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;calcium-dependent phospholipid binding, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, TRANSFERASE, Partnership for T-Cell Biology, TCELL ; _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.entry_id 4DNL # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ;CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 79 ? ASP A 84 ? LYS A 232 ASP A 237 5 ? 6 HELX_P HELX_P2 2 VAL A 110 ? MSE A 116 ? VAL A 263 MSE A 269 1 ? 7 HELX_P HELX_P3 3 GLU A 128 ? TYR A 132 ? GLU A 281 TYR A 285 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PRO 32 C ? ? ? 1_555 A MSE 33 N ? ? A PRO 185 A MSE 186 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale2 covale both ? A MSE 33 C ? ? ? 1_555 A ASP 34 N ? ? A MSE 186 A ASP 187 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale3 covale both ? A PHE 102 C ? ? ? 1_555 A MSE 103 N ? ? A PHE 255 A MSE 256 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A MSE 103 C ? ? ? 1_555 A GLY 104 N ? ? A MSE 256 A GLY 257 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale5 covale both ? A LEU 113 C ? ? ? 1_555 A MSE 114 N ? ? A LEU 266 A MSE 267 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale6 covale both ? A MSE 114 C ? ? ? 1_555 A LYS 115 N ? ? A MSE 267 A LYS 268 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale7 covale both ? A LYS 115 C ? ? ? 1_555 A MSE 116 N ? ? A LYS 268 A MSE 269 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale8 covale both ? A MSE 116 C ? ? ? 1_555 A PRO 117 N ? ? A MSE 269 A PRO 270 1_555 ? ? ? ? ? ? ? 1.356 ? ? metalc1 metalc ? ? A ASP 34 OD2 ? ? ? 1_555 B NA . NA ? ? A ASP 187 A NA 300 1_555 ? ? ? ? ? ? ? 2.633 ? ? metalc2 metalc ? ? A ASP 34 OD1 ? ? ? 1_555 B NA . NA ? ? A ASP 187 A NA 300 1_555 ? ? ? ? ? ? ? 2.775 ? ? metalc3 metalc ? ? A ASP 40 OD2 ? ? ? 1_555 B NA . NA ? ? A ASP 193 A NA 300 1_555 ? ? ? ? ? ? ? 2.443 ? ? metalc4 metalc ? ? A ASP 93 OD1 ? ? ? 1_555 B NA . NA ? ? A ASP 246 A NA 300 1_555 ? ? ? ? ? ? ? 2.390 ? ? metalc5 metalc ? ? A TRP 94 O ? ? ? 1_555 B NA . NA ? ? A TRP 247 A NA 300 1_555 ? ? ? ? ? ? ? 2.437 ? ? metalc6 metalc ? ? A ASP 95 OD1 ? ? ? 1_555 B NA . NA ? ? A ASP 248 A NA 300 1_555 ? ? ? ? ? ? ? 2.421 ? ? metalc7 metalc ? ? B NA . NA ? ? ? 1_555 C HOH . O ? ? A NA 300 A HOH 410 1_555 ? ? ? ? ? ? ? 3.131 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ILE _struct_mon_prot_cis.label_seq_id 48 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ILE _struct_mon_prot_cis.auth_seq_id 201 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 49 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 202 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.44 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 69 ? LYS A 77 ? GLN A 222 LYS A 230 A 2 LYS A 19 ? LYS A 28 ? LYS A 172 LYS A 181 A 3 ARG A 8 ? ALA A 16 ? ARG A 161 ALA A 169 A 4 ALA A 118 ? LYS A 123 ? ALA A 271 LYS A 276 B 1 GLN A 57 ? LYS A 58 ? GLN A 210 LYS A 211 B 2 PRO A 41 ? ILE A 48 ? PRO A 194 ILE A 201 B 3 ARG A 86 ? ASP A 93 ? ARG A 239 ASP A 246 B 4 ASP A 101 ? GLY A 109 ? ASP A 254 GLY A 262 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 72 ? O GLU A 225 N VAL A 24 ? N VAL A 177 A 2 3 O HIS A 21 ? O HIS A 174 N GLU A 14 ? N GLU A 167 A 3 4 N ILE A 9 ? N ILE A 162 O TYR A 122 ? O TYR A 275 B 1 2 O GLN A 57 ? O GLN A 210 N LEU A 45 ? N LEU A 198 B 2 3 N LYS A 44 ? N LYS A 197 O GLU A 90 ? O GLU A 243 B 3 4 N ILE A 91 ? N ILE A 244 O GLY A 104 ? O GLY A 257 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NA _struct_site.pdbx_auth_seq_id 300 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE NA A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 34 ? ASP A 187 . ? 1_555 ? 2 AC1 5 ASP A 40 ? ASP A 193 . ? 1_555 ? 3 AC1 5 ASP A 93 ? ASP A 246 . ? 1_555 ? 4 AC1 5 TRP A 94 ? TRP A 247 . ? 1_555 ? 5 AC1 5 ASP A 95 ? ASP A 248 . ? 1_555 ? # _atom_sites.entry_id 4DNL _atom_sites.fract_transf_matrix[1][1] 0.017231 _atom_sites.fract_transf_matrix[1][2] 0.009948 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019897 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011272 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 HIS 2 155 ? ? ? A . n A 1 3 THR 3 156 ? ? ? A . n A 1 4 GLU 4 157 157 GLU GLU A . n A 1 5 LYS 5 158 158 LYS LYS A . n A 1 6 ARG 6 159 159 ARG ARG A . n A 1 7 GLY 7 160 160 GLY GLY A . n A 1 8 ARG 8 161 161 ARG ARG A . n A 1 9 ILE 9 162 162 ILE ILE A . n A 1 10 TYR 10 163 163 TYR TYR A . n A 1 11 LEU 11 164 164 LEU LEU A . n A 1 12 LYS 12 165 165 LYS LYS A . n A 1 13 ALA 13 166 166 ALA ALA A . n A 1 14 GLU 14 167 167 GLU GLU A . n A 1 15 VAL 15 168 168 VAL VAL A . n A 1 16 ALA 16 169 169 ALA ALA A . n A 1 17 ASP 17 170 170 ASP ASP A . n A 1 18 GLU 18 171 171 GLU GLU A . n A 1 19 LYS 19 172 172 LYS LYS A . n A 1 20 LEU 20 173 173 LEU LEU A . n A 1 21 HIS 21 174 174 HIS HIS A . n A 1 22 VAL 22 175 175 VAL VAL A . n A 1 23 THR 23 176 176 THR THR A . n A 1 24 VAL 24 177 177 VAL VAL A . n A 1 25 ARG 25 178 178 ARG ARG A . n A 1 26 ASP 26 179 179 ASP ASP A . n A 1 27 ALA 27 180 180 ALA ALA A . n A 1 28 LYS 28 181 181 LYS LYS A . n A 1 29 ASN 29 182 182 ASN ASN A . n A 1 30 LEU 30 183 183 LEU LEU A . n A 1 31 ILE 31 184 184 ILE ILE A . n A 1 32 PRO 32 185 185 PRO PRO A . n A 1 33 MSE 33 186 186 MSE MSE A . n A 1 34 ASP 34 187 187 ASP ASP A . n A 1 35 PRO 35 188 188 PRO PRO A . n A 1 36 ASN 36 189 189 ASN ASN A . n A 1 37 GLY 37 190 190 GLY GLY A . n A 1 38 LEU 38 191 191 LEU LEU A . n A 1 39 SER 39 192 192 SER SER A . n A 1 40 ASP 40 193 193 ASP ASP A . n A 1 41 PRO 41 194 194 PRO PRO A . n A 1 42 TYR 42 195 195 TYR TYR A . n A 1 43 VAL 43 196 196 VAL VAL A . n A 1 44 LYS 44 197 197 LYS LYS A . n A 1 45 LEU 45 198 198 LEU LEU A . n A 1 46 LYS 46 199 199 LYS LYS A . n A 1 47 LEU 47 200 200 LEU LEU A . n A 1 48 ILE 48 201 201 ILE ILE A . n A 1 49 PRO 49 202 202 PRO PRO A . n A 1 50 ASP 50 203 203 ASP ASP A . n A 1 51 PRO 51 204 204 PRO PRO A . n A 1 52 LYS 52 205 205 LYS LYS A . n A 1 53 ASN 53 206 206 ASN ASN A . n A 1 54 GLU 54 207 207 GLU GLU A . n A 1 55 SER 55 208 208 SER SER A . n A 1 56 LYS 56 209 209 LYS LYS A . n A 1 57 GLN 57 210 210 GLN GLN A . n A 1 58 LYS 58 211 211 LYS LYS A . n A 1 59 THR 59 212 212 THR THR A . n A 1 60 LYS 60 213 213 LYS LYS A . n A 1 61 THR 61 214 214 THR THR A . n A 1 62 ILE 62 215 215 ILE ILE A . n A 1 63 ARG 63 216 216 ARG ARG A . n A 1 64 SER 64 217 217 SER SER A . n A 1 65 THR 65 218 218 THR THR A . n A 1 66 LEU 66 219 219 LEU LEU A . n A 1 67 ASN 67 220 220 ASN ASN A . n A 1 68 PRO 68 221 221 PRO PRO A . n A 1 69 GLN 69 222 222 GLN GLN A . n A 1 70 TRP 70 223 223 TRP TRP A . n A 1 71 ASN 71 224 224 ASN ASN A . n A 1 72 GLU 72 225 225 GLU GLU A . n A 1 73 SER 73 226 226 SER SER A . n A 1 74 PHE 74 227 227 PHE PHE A . n A 1 75 THR 75 228 228 THR THR A . n A 1 76 PHE 76 229 229 PHE PHE A . n A 1 77 LYS 77 230 230 LYS LYS A . n A 1 78 LEU 78 231 231 LEU LEU A . n A 1 79 LYS 79 232 232 LYS LYS A . n A 1 80 PRO 80 233 233 PRO PRO A . n A 1 81 SER 81 234 234 SER SER A . n A 1 82 ASP 82 235 235 ASP ASP A . n A 1 83 LYS 83 236 236 LYS LYS A . n A 1 84 ASP 84 237 237 ASP ASP A . n A 1 85 ARG 85 238 238 ARG ARG A . n A 1 86 ARG 86 239 239 ARG ARG A . n A 1 87 LEU 87 240 240 LEU LEU A . n A 1 88 SER 88 241 241 SER SER A . n A 1 89 VAL 89 242 242 VAL VAL A . n A 1 90 GLU 90 243 243 GLU GLU A . n A 1 91 ILE 91 244 244 ILE ILE A . n A 1 92 TRP 92 245 245 TRP TRP A . n A 1 93 ASP 93 246 246 ASP ASP A . n A 1 94 TRP 94 247 247 TRP TRP A . n A 1 95 ASP 95 248 248 ASP ASP A . n A 1 96 ARG 96 249 249 ARG ARG A . n A 1 97 THR 97 250 250 THR THR A . n A 1 98 THR 98 251 251 THR THR A . n A 1 99 ARG 99 252 252 ARG ARG A . n A 1 100 ASN 100 253 253 ASN ASN A . n A 1 101 ASP 101 254 254 ASP ASP A . n A 1 102 PHE 102 255 255 PHE PHE A . n A 1 103 MSE 103 256 256 MSE MSE A . n A 1 104 GLY 104 257 257 GLY GLY A . n A 1 105 SER 105 258 258 SER SER A . n A 1 106 LEU 106 259 259 LEU LEU A . n A 1 107 SER 107 260 260 SER SER A . n A 1 108 PHE 108 261 261 PHE PHE A . n A 1 109 GLY 109 262 262 GLY GLY A . n A 1 110 VAL 110 263 263 VAL VAL A . n A 1 111 SER 111 264 264 SER SER A . n A 1 112 GLU 112 265 265 GLU GLU A . n A 1 113 LEU 113 266 266 LEU LEU A . n A 1 114 MSE 114 267 267 MSE MSE A . n A 1 115 LYS 115 268 268 LYS LYS A . n A 1 116 MSE 116 269 269 MSE MSE A . n A 1 117 PRO 117 270 270 PRO PRO A . n A 1 118 ALA 118 271 271 ALA ALA A . n A 1 119 SER 119 272 272 SER SER A . n A 1 120 GLY 120 273 273 GLY GLY A . n A 1 121 TRP 121 274 274 TRP TRP A . n A 1 122 TYR 122 275 275 TYR TYR A . n A 1 123 LYS 123 276 276 LYS LYS A . n A 1 124 LEU 124 277 277 LEU LEU A . n A 1 125 LEU 125 278 278 LEU LEU A . n A 1 126 ASN 126 279 279 ASN ASN A . n A 1 127 GLN 127 280 280 GLN GLN A . n A 1 128 GLU 128 281 281 GLU GLU A . n A 1 129 GLU 129 282 282 GLU GLU A . n A 1 130 GLY 130 283 283 GLY GLY A . n A 1 131 GLU 131 284 284 GLU GLU A . n A 1 132 TYR 132 285 285 TYR TYR A . n A 1 133 TYR 133 286 286 TYR TYR A . n A 1 134 ASN 134 287 287 ASN ASN A . n A 1 135 VAL 135 288 288 VAL VAL A . n A 1 136 PRO 136 289 289 PRO PRO A . n A 1 137 ILE 137 290 290 ILE ILE A . n A 1 138 PRO 138 291 291 PRO PRO A . n A 1 139 GLU 139 292 292 GLU GLU A . n A 1 140 GLY 140 293 293 GLY GLY A . n # loop_ _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center PSI:Biology 'Joint Center for Structural Genomics' 1 JCSG PSI:Biology 'Partnership for T-Cell Biology' 2 TCELL # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 300 300 NA NA A . C 3 HOH 1 401 301 HOH HOH A . C 3 HOH 2 402 302 HOH HOH A . C 3 HOH 3 403 303 HOH HOH A . C 3 HOH 4 404 304 HOH HOH A . C 3 HOH 5 405 305 HOH HOH A . C 3 HOH 6 406 306 HOH HOH A . C 3 HOH 7 407 307 HOH HOH A . C 3 HOH 8 408 308 HOH HOH A . C 3 HOH 9 409 309 HOH HOH A . C 3 HOH 10 410 310 HOH HOH A . C 3 HOH 11 411 311 HOH HOH A . C 3 HOH 12 412 312 HOH HOH A . C 3 HOH 13 413 313 HOH HOH A . C 3 HOH 14 414 314 HOH HOH A . C 3 HOH 15 415 315 HOH HOH A . C 3 HOH 16 416 316 HOH HOH A . C 3 HOH 17 417 317 HOH HOH A . C 3 HOH 18 418 318 HOH HOH A . C 3 HOH 19 419 319 HOH HOH A . C 3 HOH 20 420 320 HOH HOH A . C 3 HOH 21 421 321 HOH HOH A . C 3 HOH 22 422 322 HOH HOH A . C 3 HOH 23 423 323 HOH HOH A . C 3 HOH 24 424 324 HOH HOH A . C 3 HOH 25 425 325 HOH HOH A . C 3 HOH 26 426 326 HOH HOH A . C 3 HOH 27 427 327 HOH HOH A . C 3 HOH 28 428 328 HOH HOH A . C 3 HOH 29 429 329 HOH HOH A . C 3 HOH 30 430 330 HOH HOH A . C 3 HOH 31 431 331 HOH HOH A . C 3 HOH 32 432 332 HOH HOH A . C 3 HOH 33 433 333 HOH HOH A . C 3 HOH 34 434 334 HOH HOH A . C 3 HOH 35 435 335 HOH HOH A . C 3 HOH 36 436 336 HOH HOH A . C 3 HOH 37 437 337 HOH HOH A . C 3 HOH 38 438 338 HOH HOH A . C 3 HOH 39 439 339 HOH HOH A . C 3 HOH 40 440 340 HOH HOH A . C 3 HOH 41 441 341 HOH HOH A . C 3 HOH 42 442 342 HOH HOH A . C 3 HOH 43 443 343 HOH HOH A . C 3 HOH 44 444 344 HOH HOH A . C 3 HOH 45 445 345 HOH HOH A . C 3 HOH 46 446 346 HOH HOH A . C 3 HOH 47 447 347 HOH HOH A . C 3 HOH 48 448 348 HOH HOH A . C 3 HOH 49 449 349 HOH HOH A . C 3 HOH 50 450 350 HOH HOH A . C 3 HOH 51 451 351 HOH HOH A . C 3 HOH 52 452 352 HOH HOH A . C 3 HOH 53 453 353 HOH HOH A . C 3 HOH 54 454 354 HOH HOH A . C 3 HOH 55 455 355 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 33 A MSE 186 ? MET SELENOMETHIONINE 2 A MSE 103 A MSE 256 ? MET SELENOMETHIONINE 3 A MSE 114 A MSE 267 ? MET SELENOMETHIONINE 4 A MSE 116 A MSE 269 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 34 ? A ASP 187 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 OD1 ? A ASP 34 ? A ASP 187 ? 1_555 47.4 ? 2 OD2 ? A ASP 34 ? A ASP 187 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 OD2 ? A ASP 40 ? A ASP 193 ? 1_555 66.7 ? 3 OD1 ? A ASP 34 ? A ASP 187 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 OD2 ? A ASP 40 ? A ASP 193 ? 1_555 113.0 ? 4 OD2 ? A ASP 34 ? A ASP 187 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 OD1 ? A ASP 93 ? A ASP 246 ? 1_555 108.3 ? 5 OD1 ? A ASP 34 ? A ASP 187 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 OD1 ? A ASP 93 ? A ASP 246 ? 1_555 86.0 ? 6 OD2 ? A ASP 40 ? A ASP 193 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 OD1 ? A ASP 93 ? A ASP 246 ? 1_555 106.3 ? 7 OD2 ? A ASP 34 ? A ASP 187 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 O ? A TRP 94 ? A TRP 247 ? 1_555 145.8 ? 8 OD1 ? A ASP 34 ? A ASP 187 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 O ? A TRP 94 ? A TRP 247 ? 1_555 164.3 ? 9 OD2 ? A ASP 40 ? A ASP 193 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 O ? A TRP 94 ? A TRP 247 ? 1_555 82.2 ? 10 OD1 ? A ASP 93 ? A ASP 246 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 O ? A TRP 94 ? A TRP 247 ? 1_555 93.5 ? 11 OD2 ? A ASP 34 ? A ASP 187 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 OD1 ? A ASP 95 ? A ASP 248 ? 1_555 118.3 ? 12 OD1 ? A ASP 34 ? A ASP 187 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 OD1 ? A ASP 95 ? A ASP 248 ? 1_555 78.3 ? 13 OD2 ? A ASP 40 ? A ASP 193 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 OD1 ? A ASP 95 ? A ASP 248 ? 1_555 158.8 ? 14 OD1 ? A ASP 93 ? A ASP 246 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 OD1 ? A ASP 95 ? A ASP 248 ? 1_555 92.0 ? 15 O ? A TRP 94 ? A TRP 247 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 OD1 ? A ASP 95 ? A ASP 248 ? 1_555 86.0 ? 16 OD2 ? A ASP 34 ? A ASP 187 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 O ? C HOH . ? A HOH 410 ? 1_555 81.5 ? 17 OD1 ? A ASP 34 ? A ASP 187 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 O ? C HOH . ? A HOH 410 ? 1_555 107.6 ? 18 OD2 ? A ASP 40 ? A ASP 193 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 O ? C HOH . ? A HOH 410 ? 1_555 68.2 ? 19 OD1 ? A ASP 93 ? A ASP 246 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 O ? C HOH . ? A HOH 410 ? 1_555 166.4 ? 20 O ? A TRP 94 ? A TRP 247 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 O ? C HOH . ? A HOH 410 ? 1_555 73.7 ? 21 OD1 ? A ASP 95 ? A ASP 248 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 O ? C HOH . ? A HOH 410 ? 1_555 91.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-02-22 2 'Structure model' 1 1 2015-10-21 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_ref_seq_dif.details' 24 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 31.4860 _pdbx_refine_tls.origin_y 14.0380 _pdbx_refine_tls.origin_z 9.1000 _pdbx_refine_tls.T[1][1] 0.1099 _pdbx_refine_tls.T[2][2] 0.0484 _pdbx_refine_tls.T[3][3] 0.1401 _pdbx_refine_tls.T[1][2] 0.0204 _pdbx_refine_tls.T[1][3] -0.0230 _pdbx_refine_tls.T[2][3] -0.0538 _pdbx_refine_tls.L[1][1] 3.4894 _pdbx_refine_tls.L[2][2] 2.7306 _pdbx_refine_tls.L[3][3] 4.2902 _pdbx_refine_tls.L[1][2] -0.4296 _pdbx_refine_tls.L[1][3] 1.3272 _pdbx_refine_tls.L[2][3] -1.3256 _pdbx_refine_tls.S[1][1] 0.2181 _pdbx_refine_tls.S[2][2] -0.0169 _pdbx_refine_tls.S[3][3] -0.2012 _pdbx_refine_tls.S[1][2] 0.2053 _pdbx_refine_tls.S[1][3] -0.5924 _pdbx_refine_tls.S[2][3] 0.0813 _pdbx_refine_tls.S[2][1] -0.0028 _pdbx_refine_tls.S[3][1] 0.1700 _pdbx_refine_tls.S[3][2] 0.1314 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 157 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 293 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'December 6, 2010' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 REFMAC 5.6.0117 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 4DNL _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 155-293 OF THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CE2 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 TRP _pdbx_validate_rmsd_bond.auth_seq_id_1 245 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 TRP _pdbx_validate_rmsd_bond.auth_seq_id_2 245 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.484 _pdbx_validate_rmsd_bond.bond_target_value 1.409 _pdbx_validate_rmsd_bond.bond_deviation 0.075 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 178 ? ? -85.95 -73.38 2 1 LEU A 191 ? ? -121.13 -166.33 3 1 GLU A 292 ? ? 20.65 39.16 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 157 ? CG ? A GLU 4 CG 2 1 Y 1 A GLU 157 ? CD ? A GLU 4 CD 3 1 Y 1 A GLU 157 ? OE1 ? A GLU 4 OE1 4 1 Y 1 A GLU 157 ? OE2 ? A GLU 4 OE2 5 1 Y 1 A LYS 158 ? CG ? A LYS 5 CG 6 1 Y 1 A LYS 158 ? CD ? A LYS 5 CD 7 1 Y 1 A LYS 158 ? CE ? A LYS 5 CE 8 1 Y 1 A LYS 158 ? NZ ? A LYS 5 NZ 9 1 Y 1 A LYS 209 ? CD ? A LYS 56 CD 10 1 Y 1 A LYS 209 ? CE ? A LYS 56 CE 11 1 Y 1 A LYS 209 ? NZ ? A LYS 56 NZ 12 1 Y 1 A GLU 292 ? CG ? A GLU 139 CG 13 1 Y 1 A GLU 292 ? CD ? A GLU 139 CD 14 1 Y 1 A GLU 292 ? OE1 ? A GLU 139 OE1 15 1 Y 1 A GLU 292 ? OE2 ? A GLU 139 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A HIS 155 ? A HIS 2 3 1 Y 1 A THR 156 ? A THR 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 water HOH #