HEADER ANTIVIRAL PROTEIN 12-FEB-12 4DOZ TITLE CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS CMR2 (CAS10) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 195-871; COMPND 5 SYNONYM: CMR2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: DSM 3638; SOURCE 5 GENE: PF1129; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYCLASE, CRISPR, ZN, ANTIVIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHU,K.YE REVDAT 3 20-MAR-24 4DOZ 1 REMARK SEQADV LINK REVDAT 2 26-JUN-13 4DOZ 1 JRNL REVDAT 1 21-MAR-12 4DOZ 0 JRNL AUTH X.ZHU,K.YE JRNL TITL CRYSTAL STRUCTURE OF CMR2 SUGGESTS A NUCLEOTIDE JRNL TITL 2 CYCLASE-RELATED ENZYME IN TYPE III CRISPR-CAS SYSTEMS JRNL REF FEBS LETT. V. 586 939 2012 JRNL REFN ISSN 0014-5793 JRNL PMID 22449983 JRNL DOI 10.1016/J.FEBSLET.2012.02.036 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 15332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.313 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 815 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1064 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3650 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4521 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 110.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.56000 REMARK 3 B22 (A**2) : 11.85000 REMARK 3 B33 (A**2) : -9.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.537 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.551 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 68.639 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4612 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6208 ; 1.283 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 547 ; 6.275 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;40.453 ;24.138 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 877 ;20.475 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;13.949 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 696 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3352 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2764 ; 0.435 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4460 ; 0.820 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1848 ; 0.949 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1748 ; 1.537 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 205 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 44.9100 73.8680 92.7820 REMARK 3 T TENSOR REMARK 3 T11: 0.2776 T22: 0.7814 REMARK 3 T33: 0.2519 T12: -0.0704 REMARK 3 T13: -0.0507 T23: -0.3166 REMARK 3 L TENSOR REMARK 3 L11: 2.0477 L22: 2.2863 REMARK 3 L33: 2.8018 L12: 0.2261 REMARK 3 L13: -0.2073 L23: 0.3534 REMARK 3 S TENSOR REMARK 3 S11: -0.3924 S12: -0.6015 S13: 0.3761 REMARK 3 S21: 0.0786 S22: 0.2462 S23: -0.1188 REMARK 3 S31: -0.1688 S32: 0.6199 S33: 0.1462 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 502 A 592 REMARK 3 ORIGIN FOR THE GROUP (A): 38.2020 36.3120 88.0840 REMARK 3 T TENSOR REMARK 3 T11: 0.4616 T22: 0.5434 REMARK 3 T33: 0.3179 T12: -0.4297 REMARK 3 T13: 0.1506 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 0.7345 L22: 4.6333 REMARK 3 L33: 7.9603 L12: -0.4459 REMARK 3 L13: 0.4229 L23: -3.6330 REMARK 3 S TENSOR REMARK 3 S11: -0.1149 S12: -0.3109 S13: 0.0117 REMARK 3 S21: 0.2560 S22: -0.4128 S23: 0.1652 REMARK 3 S31: 0.8508 S32: -0.5291 S33: 0.5277 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 593 A 764 REMARK 3 ORIGIN FOR THE GROUP (A): 43.4420 63.8970 72.2590 REMARK 3 T TENSOR REMARK 3 T11: 0.3684 T22: 0.1955 REMARK 3 T33: 0.4669 T12: -0.0493 REMARK 3 T13: 0.0179 T23: -0.0529 REMARK 3 L TENSOR REMARK 3 L11: 1.7756 L22: 2.9705 REMARK 3 L33: 2.9381 L12: -1.5311 REMARK 3 L13: -0.4858 L23: 0.0208 REMARK 3 S TENSOR REMARK 3 S11: 0.0902 S12: -0.1270 S13: 0.0228 REMARK 3 S21: -0.1980 S22: -0.0660 S23: -0.1660 REMARK 3 S31: -0.2233 S32: -0.0791 S33: -0.0242 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 765 A 871 REMARK 3 ORIGIN FOR THE GROUP (A): 46.7180 48.2000 52.2910 REMARK 3 T TENSOR REMARK 3 T11: 0.3638 T22: 0.5587 REMARK 3 T33: 0.3625 T12: -0.0789 REMARK 3 T13: 0.0420 T23: -0.4089 REMARK 3 L TENSOR REMARK 3 L11: 4.5448 L22: 1.8929 REMARK 3 L33: 4.3324 L12: 1.3769 REMARK 3 L13: -0.9279 L23: 2.4301 REMARK 3 S TENSOR REMARK 3 S11: 0.0430 S12: 1.0861 S13: -0.4698 REMARK 3 S21: 0.2239 S22: -0.1843 S23: -0.1160 REMARK 3 S31: 0.0538 S32: -0.7513 S33: 0.1413 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DOZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070602. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16512 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 33% PEG 400, 0.2M SODIUM CITRATE, 0.1M REMARK 280 TRIS-HCL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.70550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.55100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.73150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.55100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.70550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.73150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 194 REMARK 465 ALA A 195 REMARK 465 ASP A 196 REMARK 465 THR A 197 REMARK 465 ARG A 198 REMARK 465 PHE A 199 REMARK 465 PRO A 200 REMARK 465 ASP A 201 REMARK 465 HIS A 202 REMARK 465 ALA A 203 REMARK 465 ILE A 204 REMARK 465 GLY A 341 REMARK 465 VAL A 342 REMARK 465 VAL A 343 REMARK 465 LYS A 344 REMARK 465 VAL A 345 REMARK 465 ASP A 346 REMARK 465 ARG A 347 REMARK 465 SER A 348 REMARK 465 SER A 376 REMARK 465 GLU A 377 REMARK 465 LYS A 378 REMARK 465 GLU A 379 REMARK 465 ASP A 380 REMARK 465 ILE A 381 REMARK 465 TYR A 382 REMARK 465 GLN A 383 REMARK 465 VAL A 384 REMARK 465 THR A 385 REMARK 465 GLU A 386 REMARK 465 ASN A 387 REMARK 465 ALA A 388 REMARK 465 GLY A 389 REMARK 465 LEU A 390 REMARK 465 SER A 391 REMARK 465 ASP A 392 REMARK 465 GLU A 393 REMARK 465 ASP A 394 REMARK 465 VAL A 395 REMARK 465 LYS A 396 REMARK 465 LYS A 397 REMARK 465 TRP A 398 REMARK 465 LEU A 399 REMARK 465 LYS A 400 REMARK 465 PHE A 401 REMARK 465 ALA A 402 REMARK 465 GLU A 403 REMARK 465 LYS A 404 REMARK 465 LYS A 405 REMARK 465 GLU A 406 REMARK 465 ASN A 407 REMARK 465 SER A 408 REMARK 465 ARG A 409 REMARK 465 VAL A 410 REMARK 465 LEU A 411 REMARK 465 GLU A 412 REMARK 465 ARG A 413 REMARK 465 ILE A 414 REMARK 465 ALA A 415 REMARK 465 ILE A 416 REMARK 465 ARG A 436 REMARK 465 PHE A 437 REMARK 465 GLU A 438 REMARK 465 LYS A 439 REMARK 465 SER A 440 REMARK 465 GLU A 441 REMARK 465 GLN A 442 REMARK 465 LEU A 443 REMARK 465 LYS A 444 REMARK 465 GLY A 445 REMARK 465 HIS A 449 REMARK 465 VAL A 450 REMARK 465 VAL A 538 REMARK 465 LYS A 539 REMARK 465 ASP A 540 REMARK 465 ASN A 541 REMARK 465 MET A 542 REMARK 465 LEU A 543 REMARK 465 VAL A 544 REMARK 465 GLY A 614 REMARK 465 GLU A 615 REMARK 465 ILE A 616 REMARK 465 SER A 617 REMARK 465 THR A 618 REMARK 465 ARG A 619 REMARK 465 ILE A 620 REMARK 465 HIS A 621 REMARK 465 PRO A 622 REMARK 465 ASN A 623 REMARK 465 ILE A 624 REMARK 465 ARG A 625 REMARK 465 ASP A 626 REMARK 465 TYR A 627 REMARK 465 VAL A 628 REMARK 465 GLU A 629 REMARK 465 ILE A 630 REMARK 465 PRO A 631 REMARK 465 GLU A 632 REMARK 465 ALA A 633 REMARK 465 LYS A 634 REMARK 465 TYR A 635 REMARK 465 TYR A 636 REMARK 465 SER A 637 REMARK 465 PHE A 699 REMARK 465 GLU A 700 REMARK 465 ASN A 701 REMARK 465 GLY A 702 REMARK 465 SER A 703 REMARK 465 LEU A 704 REMARK 465 LEU A 705 REMARK 465 PRO A 706 REMARK 465 LEU A 781 REMARK 465 GLU A 782 REMARK 465 GLU A 783 REMARK 465 LYS A 784 REMARK 465 GLY A 785 REMARK 465 ILE A 819 REMARK 465 ARG A 820 REMARK 465 GLY A 821 REMARK 465 ARG A 822 REMARK 465 ASN A 823 REMARK 465 LEU A 872 REMARK 465 GLU A 873 REMARK 465 HIS A 874 REMARK 465 HIS A 875 REMARK 465 HIS A 876 REMARK 465 HIS A 877 REMARK 465 HIS A 878 REMARK 465 HIS A 879 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 446 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 446 CZ3 CH2 REMARK 470 LYS A 447 CG CD CE NZ REMARK 470 ASN A 454 CG OD1 ND2 REMARK 470 LEU A 455 CG CD1 CD2 REMARK 470 MET A 461 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 229 -73.75 -121.57 REMARK 500 PRO A 231 -71.18 -56.60 REMARK 500 PHE A 264 -109.65 -123.20 REMARK 500 ASP A 291 -3.33 -56.33 REMARK 500 ARG A 331 -71.23 -49.66 REMARK 500 LEU A 354 46.69 -105.83 REMARK 500 TYR A 365 -79.52 -58.50 REMARK 500 GLU A 429 10.93 -67.51 REMARK 500 VAL A 432 -76.52 -49.35 REMARK 500 LYS A 447 -137.77 -148.38 REMARK 500 ALA A 456 10.48 -67.35 REMARK 500 ILE A 457 -30.97 -148.28 REMARK 500 ASP A 460 -80.39 -90.67 REMARK 500 MET A 461 89.06 -164.04 REMARK 500 GLU A 474 -9.01 74.88 REMARK 500 ILE A 499 128.60 -27.77 REMARK 500 ASN A 513 25.12 41.12 REMARK 500 TYR A 522 -152.95 -116.82 REMARK 500 ASP A 536 49.85 -88.41 REMARK 500 ASP A 547 -29.55 -39.44 REMARK 500 LEU A 558 -34.01 86.35 REMARK 500 LYS A 566 173.20 -59.72 REMARK 500 VAL A 612 23.01 -75.08 REMARK 500 ASP A 663 5.96 48.65 REMARK 500 LYS A 737 -69.45 -97.46 REMARK 500 PRO A 742 -73.83 -37.98 REMARK 500 THR A 801 -89.31 -110.95 REMARK 500 PHE A 870 75.33 -114.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 448 SG REMARK 620 2 CYS A 451 SG 80.8 REMARK 620 3 CYS A 478 SG 158.7 120.4 REMARK 620 4 CYS A 481 SG 56.3 114.4 110.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1000 DBREF 4DOZ A 195 871 UNP Q8U1S6 Q8U1S6_PYRFU 195 871 SEQADV 4DOZ MET A 194 UNP Q8U1S6 EXPRESSION TAG SEQADV 4DOZ LEU A 872 UNP Q8U1S6 EXPRESSION TAG SEQADV 4DOZ GLU A 873 UNP Q8U1S6 EXPRESSION TAG SEQADV 4DOZ HIS A 874 UNP Q8U1S6 EXPRESSION TAG SEQADV 4DOZ HIS A 875 UNP Q8U1S6 EXPRESSION TAG SEQADV 4DOZ HIS A 876 UNP Q8U1S6 EXPRESSION TAG SEQADV 4DOZ HIS A 877 UNP Q8U1S6 EXPRESSION TAG SEQADV 4DOZ HIS A 878 UNP Q8U1S6 EXPRESSION TAG SEQADV 4DOZ HIS A 879 UNP Q8U1S6 EXPRESSION TAG SEQRES 1 A 686 MET ALA ASP THR ARG PHE PRO ASP HIS ALA ILE TRP THR SEQRES 2 A 686 HIS LEU ASP LEU THR SER ALA LEU SER VAL LYS ASP PRO SEQRES 3 A 686 THR LEU LEU ARG ILE LYS ILE VAL PRO VAL GLN PRO PHE SEQRES 4 A 686 ILE ALA ASN SER ARG LYS GLN LEU ASP LEU TRP ALA SER SEQRES 5 A 686 SER HIS LEU LEU SER MET LEU MET TYR LYS ALA LEU GLU SEQRES 6 A 686 VAL ILE VAL ASP LYS PHE GLY PRO GLU HIS VAL ILE TYR SEQRES 7 A 686 PRO SER LEU ARG ASP GLN PRO PHE PHE LEU LYS PHE TYR SEQRES 8 A 686 LEU GLY GLU ASN ILE GLY ASP GLU ILE LEU VAL ALA ASN SEQRES 9 A 686 LEU PRO ASN LYS ALA LEU ALA ILE VAL SER GLY LYS GLU SEQRES 10 A 686 ALA GLU LYS ILE GLU GLU GLU ILE LYS LYS ARG ILE ARG SEQRES 11 A 686 ASP PHE LEU LEU GLN LEU TYR ARG GLU ALA VAL ASP TRP SEQRES 12 A 686 ALA VAL GLU ASN GLY VAL VAL LYS VAL ASP ARG SER GLU SEQRES 13 A 686 LYS ASP SER MET LEU LYS GLU ALA TYR LEU LYS ILE VAL SEQRES 14 A 686 ARG GLU TYR PHE THR VAL SER ILE THR TRP VAL SER LEU SEQRES 15 A 686 SER GLU LYS GLU ASP ILE TYR GLN VAL THR GLU ASN ALA SEQRES 16 A 686 GLY LEU SER ASP GLU ASP VAL LYS LYS TRP LEU LYS PHE SEQRES 17 A 686 ALA GLU LYS LYS GLU ASN SER ARG VAL LEU GLU ARG ILE SEQRES 18 A 686 ALA ILE TYR PRO LEU LEU VAL LYS ILE LEU ASP SER LEU SEQRES 19 A 686 GLY GLU ARG LYS VAL THR GLU GLU ARG PHE GLU LYS SER SEQRES 20 A 686 GLU GLN LEU LYS GLY TRP LYS CYS HIS VAL CYS GLY GLU SEQRES 21 A 686 ASN LEU ALA ILE PHE GLY ASP MET TYR ASP HIS ASP ASN SEQRES 22 A 686 LEU LYS SER LEU TRP LEU ASP GLU GLU PRO LEU CYS PRO SEQRES 23 A 686 MET CYS LEU ILE LYS ARG TYR TYR PRO VAL TRP ILE ARG SEQRES 24 A 686 SER LYS THR GLY GLN LYS ILE ARG PHE GLU SER VAL VAL SEQRES 25 A 686 ASP VAL ALA LEU LEU TYR LYS ASN TRP ARG LYS ILE PHE SEQRES 26 A 686 ASP GLU LYS TYR GLY LYS ASP LEU VAL SER LYS ALA ARG SEQRES 27 A 686 GLU VAL SER GLU ASP PHE VAL LYS ASP ASN MET LEU VAL SEQRES 28 A 686 ASP SER ASP LEU TYR TYR SER SER THR TRP GLU SER GLY SEQRES 29 A 686 LEU SER LYS LYS LEU LYS ASN LYS LYS GLU ILE ASP GLU SEQRES 30 A 686 GLU LYS VAL LYS GLU VAL VAL ASP PHE LEU ASN ALA ALA SEQRES 31 A 686 TYR LYS GLU ILE GLY ASN PRO PRO LYS TYR TYR ALA ILE SEQRES 32 A 686 LEU VAL MET ASP GLY ASP ASP MET GLY LYS VAL ILE SER SEQRES 33 A 686 GLY GLU VAL LEU GLY GLU ILE SER THR ARG ILE HIS PRO SEQRES 34 A 686 ASN ILE ARG ASP TYR VAL GLU ILE PRO GLU ALA LYS TYR SEQRES 35 A 686 TYR SER THR PRO GLN VAL HIS VAL ALA ILE SER GLN ALA SEQRES 36 A 686 LEU ALA ASN PHE SER ILE ARG GLU VAL ARG SER VAL VAL SEQRES 37 A 686 LYS ASP GLU GLY LEU LEU ILE TYR ALA GLY GLY ASP ASP SEQRES 38 A 686 VAL LEU ALA ILE LEU PRO VAL ASP LYS ALA LEU GLU VAL SEQRES 39 A 686 ALA TYR LYS ILE ARG LYS GLU PHE GLY LYS SER PHE GLU SEQRES 40 A 686 ASN GLY SER LEU LEU PRO GLY TRP LYS LEU SER ALA GLY SEQRES 41 A 686 ILE LEU ILE VAL HIS TYR LYS HIS PRO LEU TYR ASP ALA SEQRES 42 A 686 LEU GLU LYS ALA ARG ASP LEU LEU ASN ASN LYS ALA LYS SEQRES 43 A 686 ASN VAL PRO GLY LYS ASP THR LEU ALA ILE GLY LEU LEU SEQRES 44 A 686 LYS ARG SER GLY SER TYR TYR ILE SER LEU VAL GLY TRP SEQRES 45 A 686 GLU LEU ILE ARG VAL PHE TYR ASN SER GLU LEU ARG LYS SEQRES 46 A 686 LYS LEU LEU GLU GLU LYS GLY GLY VAL GLY LYS ARG PHE SEQRES 47 A 686 ILE TYR HIS VAL LEU ARG GLU VAL ASP THR TRP PRO LYS SEQRES 48 A 686 VAL GLY ILE ASP GLU MET LEU LYS PHE GLU VAL ILE ARG SEQRES 49 A 686 HIS ILE ARG GLY ARG ASN LYS GLU GLU THR LYS GLU LEU SEQRES 50 A 686 ARG GLU LYS ILE TYR GLY GLU ILE LYS ASP LEU LEU GLU SEQRES 51 A 686 HIS VAL ARG GLY ASN ASN GLU VAL GLU LYS VAL ARG GLY SEQRES 52 A 686 LEU PHE THR PHE LEU LYS ILE ILE THR ASP ALA GLU VAL SEQRES 53 A 686 PHE PRO LEU GLU HIS HIS HIS HIS HIS HIS HET ZN A1000 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 THR A 206 VAL A 216 1 11 HELIX 2 2 VAL A 229 ASN A 235 1 7 HELIX 3 3 LYS A 238 PHE A 264 1 27 HELIX 4 4 GLY A 265 GLU A 267 5 3 HELIX 5 5 GLN A 277 TYR A 284 1 8 HELIX 6 6 GLY A 290 VAL A 295 5 6 HELIX 7 7 LYS A 309 ASN A 340 1 32 HELIX 8 8 ASP A 351 LYS A 355 5 5 HELIX 9 9 ALA A 357 PHE A 366 1 10 HELIX 10 10 PRO A 418 VAL A 432 1 15 HELIX 11 11 ILE A 457 TYR A 462 1 6 HELIX 12 12 ASP A 463 TRP A 471 1 9 HELIX 13 13 CYS A 478 THR A 495 1 18 HELIX 14 14 SER A 503 LEU A 509 1 7 HELIX 15 15 LEU A 510 LYS A 512 5 3 HELIX 16 16 ASN A 513 TYR A 522 1 10 HELIX 17 17 GLY A 523 GLU A 532 1 10 HELIX 18 18 ASP A 545 TYR A 549 5 5 HELIX 19 19 TYR A 550 GLY A 557 1 8 HELIX 20 20 ASP A 569 GLY A 588 1 20 HELIX 21 21 MET A 604 SER A 609 1 6 HELIX 22 22 PRO A 639 ARG A 655 1 17 HELIX 23 23 ARG A 655 LYS A 662 1 8 HELIX 24 24 LYS A 683 SER A 698 1 16 HELIX 25 25 PRO A 722 ASN A 736 1 15 HELIX 26 26 LYS A 737 VAL A 741 5 5 HELIX 27 27 TRP A 765 ASN A 773 1 9 HELIX 28 28 SER A 774 LEU A 780 1 7 HELIX 29 29 VAL A 787 VAL A 799 1 13 HELIX 30 30 GLY A 806 ILE A 816 1 11 HELIX 31 31 GLU A 825 GLU A 843 1 19 HELIX 32 32 ASN A 849 ASP A 866 1 18 SHEET 1 A 4 VAL A 269 TYR A 271 0 SHEET 2 A 4 ALA A 302 SER A 307 -1 O LEU A 303 N ILE A 270 SHEET 3 A 4 PRO A 219 ILE A 224 -1 N THR A 220 O VAL A 306 SHEET 4 A 4 THR A 371 SER A 374 -1 O VAL A 373 N LEU A 221 SHEET 1 B 6 LEU A 666 ALA A 670 0 SHEET 2 B 6 ASP A 674 PRO A 680 -1 O ILE A 678 N LEU A 666 SHEET 3 B 6 TYR A 593 GLY A 601 -1 N ALA A 595 O LEU A 679 SHEET 4 B 6 LEU A 710 HIS A 718 -1 O LEU A 715 N ILE A 596 SHEET 5 B 6 THR A 746 LEU A 752 1 O ALA A 748 N ALA A 712 SHEET 6 B 6 TYR A 758 GLY A 764 -1 O VAL A 763 N LEU A 747 LINK SG CYS A 448 ZN ZN A1000 1555 1555 2.42 LINK SG CYS A 451 ZN ZN A1000 1555 1555 2.42 LINK SG CYS A 478 ZN ZN A1000 1555 1555 2.40 LINK SG CYS A 481 ZN ZN A1000 1555 1555 2.40 CISPEP 1 TYR A 271 PRO A 272 0 -4.25 SITE 1 AC1 4 CYS A 448 CYS A 451 CYS A 478 CYS A 481 CRYST1 73.411 87.463 137.102 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013622 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011433 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007294 0.00000