HEADER HYDROLASE/HYDROLASE INHIBITOR 13-FEB-12 4DPF TITLE BACE-1 IN COMPLEX WITH A HEA-MACROCYCLIC TYPE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-SECRETASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 57-446; COMPND 5 SYNONYM: ASPARTYL PROTEASE 2, ASP2, ASP 2, BETA-SITE AMYLOID COMPND 6 PRECURSOR PROTEIN CLEAVING ENZYME 1, BETA-SITE APP CLEAVING ENZYME 1, COMPND 7 MEMAPSIN-2, MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 2; COMPND 8 EC: 3.4.23.46; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BACE1, BACE, KIAA1149; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS BACE1, ASP2, BACE, MACROCYCLE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.LINDBERG,N.BORKAKOTI,D.DERBYSHIRE REVDAT 2 02-JAN-13 4DPF 1 JRNL REVDAT 1 11-JUL-12 4DPF 0 JRNL AUTH V.SANDGREN,T.AGBACK,P.O.JOHANSSON,J.LINDBERG,I.KVARNSTROM, JRNL AUTH 2 B.SAMUELSSON,O.BELDA,A.DAHLGREN JRNL TITL HIGHLY POTENT MACROCYCLIC BACE-1 INHIBITORS INCORPORATING A JRNL TITL 2 HYDROXYETHYLAMINE CORE: DESIGN, SYNTHESIS AND X-RAY CRYSTAL JRNL TITL 3 STRUCTURES OF ENZYME INHIBITOR COMPLEXES. JRNL REF BIOORG.MED.CHEM. V. 20 4377 2012 JRNL REFN ISSN 0968-0896 JRNL PMID 22698785 JRNL DOI 10.1016/J.BMC.2012.05.039 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 35714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1785 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2282 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2950 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.981 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3190 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4368 ; 2.030 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 405 ; 7.080 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;35.108 ;23.611 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 514 ;16.337 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.567 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 482 ; 0.159 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2467 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1916 ; 1.339 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3127 ; 2.236 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1274 ; 3.488 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1226 ; 5.280 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 433 REMARK 3 ORIGIN FOR THE GROUP (A): -2.3750 1.4164 -14.9710 REMARK 3 T TENSOR REMARK 3 T11: 0.0066 T22: 0.0399 REMARK 3 T33: 0.0622 T12: -0.0064 REMARK 3 T13: 0.0013 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.1421 L22: 0.3862 REMARK 3 L33: 0.8086 L12: -0.0755 REMARK 3 L13: -0.0783 L23: -0.0423 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.0144 S13: -0.0059 REMARK 3 S21: 0.0113 S22: 0.0076 S23: 0.0166 REMARK 3 S31: 0.0227 S32: -0.0582 S33: -0.0258 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DPF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-12. REMARK 100 THE RCSB ID CODE IS RCSB070618. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35772 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 51.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.32500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 1000, 0.1 NA-ACETATE PH4.5, 5% REMARK 280 GLYCEROL, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.88000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.94000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.35500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.94000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.88000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.35500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 43 REMARK 465 ARG A 44 REMARK 465 GLY A 45 REMARK 465 SER A 46 REMARK 465 GLY A 206 REMARK 465 PHE A 207 REMARK 465 PRO A 208 REMARK 465 LEU A 209 REMARK 465 ASN A 210 REMARK 465 GLN A 211 REMARK 465 SER A 212 REMARK 465 GLU A 213 REMARK 465 VAL A 214 REMARK 465 LEU A 215 REMARK 465 ALA A 216 REMARK 465 SER A 217 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 358 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 338 O HOH A 747 1.87 REMARK 500 O HOH A 648 O HOH A 737 2.05 REMARK 500 OE2 GLU A 173 NH1 ARG A 243 2.06 REMARK 500 O LEU A 261 O HOH A 813 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 109 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 144 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 253 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 283 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 58 107.15 95.49 REMARK 500 ASN A 159 109.04 -49.37 REMARK 500 ASN A 162 -1.71 74.36 REMARK 500 CYS A 203 -70.07 -100.73 REMARK 500 TRP A 245 -88.04 -145.82 REMARK 500 ASN A 257 59.53 38.51 REMARK 500 GLN A 319 126.91 -35.02 REMARK 500 ASN A 341 13.99 55.77 REMARK 500 ASP A 359 113.80 -165.57 REMARK 500 CYS A 407 49.08 -107.43 REMARK 500 HIS A 410 175.02 16.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0LG A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DPI RELATED DB: PDB DBREF 4DPF A 44 433 UNP P56817 BACE1_HUMAN 57 446 SEQADV 4DPF MET A 43 UNP P56817 INITIATING METHIONINE SEQRES 1 A 391 MET ARG GLY SER PHE VAL GLU MET VAL ASP ASN LEU ARG SEQRES 2 A 391 GLY LYS SER GLY GLN GLY TYR TYR VAL GLU MET THR VAL SEQRES 3 A 391 GLY SER PRO PRO GLN THR LEU ASN ILE LEU VAL ASP THR SEQRES 4 A 391 GLY SER SER ASN PHE ALA VAL GLY ALA ALA PRO HIS PRO SEQRES 5 A 391 PHE LEU HIS ARG TYR TYR GLN ARG GLN LEU SER SER THR SEQRES 6 A 391 TYR ARG ASP LEU ARG LYS GLY VAL TYR VAL PRO TYR THR SEQRES 7 A 391 GLN GLY LYS TRP GLU GLY GLU LEU GLY THR ASP LEU VAL SEQRES 8 A 391 SER ILE PRO HIS GLY PRO ASN VAL THR VAL ARG ALA ASN SEQRES 9 A 391 ILE ALA ALA ILE THR GLU SER ASP LYS PHE PHE ILE ASN SEQRES 10 A 391 GLY SER ASN TRP GLU GLY ILE LEU GLY LEU ALA TYR ALA SEQRES 11 A 391 GLU ILE ALA ARG PRO ASP ASP SER LEU GLU PRO PHE PHE SEQRES 12 A 391 ASP SER LEU VAL LYS GLN THR HIS VAL PRO ASN LEU PHE SEQRES 13 A 391 SER LEU GLN LEU CYS GLY ALA GLY PHE PRO LEU ASN GLN SEQRES 14 A 391 SER GLU VAL LEU ALA SER VAL GLY GLY SER MET ILE ILE SEQRES 15 A 391 GLY GLY ILE ASP HIS SER LEU TYR THR GLY SER LEU TRP SEQRES 16 A 391 TYR THR PRO ILE ARG ARG GLU TRP TYR TYR GLU VAL ILE SEQRES 17 A 391 ILE VAL ARG VAL GLU ILE ASN GLY GLN ASP LEU LYS MET SEQRES 18 A 391 ASP CYS LYS GLU TYR ASN TYR ASP LYS SER ILE VAL ASP SEQRES 19 A 391 SER GLY THR THR ASN LEU ARG LEU PRO LYS LYS VAL PHE SEQRES 20 A 391 GLU ALA ALA VAL LYS SER ILE LYS ALA ALA SER SER THR SEQRES 21 A 391 GLU LYS PHE PRO ASP GLY PHE TRP LEU GLY GLU GLN LEU SEQRES 22 A 391 VAL CYS TRP GLN ALA GLY THR THR PRO TRP ASN ILE PHE SEQRES 23 A 391 PRO VAL ILE SER LEU TYR LEU MET GLY GLU VAL THR ASN SEQRES 24 A 391 GLN SER PHE ARG ILE THR ILE LEU PRO GLN GLN TYR LEU SEQRES 25 A 391 ARG PRO VAL GLU ASP VAL ALA THR SER GLN ASP ASP CYS SEQRES 26 A 391 TYR LYS PHE ALA ILE SER GLN SER SER THR GLY THR VAL SEQRES 27 A 391 MET GLY ALA VAL ILE MET GLU GLY PHE TYR VAL VAL PHE SEQRES 28 A 391 ASP ARG ALA ARG LYS ARG ILE GLY PHE ALA VAL SER ALA SEQRES 29 A 391 CYS HIS VAL HIS ASP GLU PHE ARG THR ALA ALA VAL GLU SEQRES 30 A 391 GLY PRO PHE VAL THR LEU ASP MET GLU ASP CYS GLY TYR SEQRES 31 A 391 ASN HET 0LG A 500 46 HETNAM 0LG N-[(4S,8E,11S)-4-[(1R)-1-HYDROXY-2-{[3-(PROPAN-2-YL) HETNAM 2 0LG BENZYL]AMINO}ETHYL]-2,13-DIOXO-11-PHENYL-6-OXA-3,12- HETNAM 3 0LG DIAZABICYCLO[12.3.1]OCTADECA-1(18),8,14,16-TETRAEN-16- HETNAM 4 0LG YL]-N-METHYLMETHANESULFONAMIDE FORMUL 2 0LG C35 H44 N4 O6 S FORMUL 3 HOH *215(H2 O) HELIX 1 1 PHE A 47 VAL A 51 5 5 HELIX 2 2 GLN A 101 SER A 105 5 5 HELIX 3 3 TYR A 171 ALA A 175 5 5 HELIX 4 4 PRO A 183 THR A 192 1 10 HELIX 5 5 ASP A 228 SER A 230 5 3 HELIX 6 6 ASP A 264 TYR A 270 5 7 HELIX 7 7 LYS A 286 SER A 300 1 15 HELIX 8 8 PRO A 306 LEU A 311 1 6 HELIX 9 9 PRO A 324 PHE A 328 5 5 HELIX 10 10 LEU A 349 TYR A 353 1 5 HELIX 11 11 ASP A 359 SER A 363 5 5 HELIX 12 12 GLY A 382 GLU A 387 1 6 HELIX 13 13 ARG A 395 ARG A 397 5 3 SHEET 1 A 9 ARG A 109 PRO A 118 0 SHEET 2 A 9 LYS A 123 SER A 134 -1 O LEU A 128 N LYS A 113 SHEET 3 A 9 TYR A 63 VAL A 68 -1 N THR A 67 O SER A 134 SHEET 4 A 9 LEU A 54 ARG A 55 -1 N ARG A 55 O TYR A 63 SHEET 5 A 9 GLY A 219 ILE A 224 -1 O GLY A 220 N LEU A 54 SHEET 6 A 9 PHE A 198 LEU A 202 -1 N GLN A 201 O SER A 221 SHEET 7 A 9 PHE A 389 ASP A 394 -1 O PHE A 393 N PHE A 198 SHEET 8 A 9 ARG A 399 SER A 405 -1 O GLY A 401 N VAL A 392 SHEET 9 A 9 TYR A 232 PRO A 240 -1 N THR A 239 O ILE A 400 SHEET 1 B13 ARG A 109 PRO A 118 0 SHEET 2 B13 LYS A 123 SER A 134 -1 O LEU A 128 N LYS A 113 SHEET 3 B13 THR A 142 ASP A 154 -1 O ALA A 149 N GLU A 127 SHEET 4 B13 PHE A 86 GLY A 89 1 N VAL A 88 O ILE A 150 SHEET 5 B13 GLY A 165 GLY A 168 -1 O ILE A 166 N ALA A 87 SHEET 6 B13 GLN A 73 ASP A 80 1 N LEU A 78 O LEU A 167 SHEET 7 B13 TYR A 63 VAL A 68 -1 N VAL A 64 O ILE A 77 SHEET 8 B13 LEU A 54 ARG A 55 -1 N ARG A 55 O TYR A 63 SHEET 9 B13 GLY A 219 ILE A 224 -1 O GLY A 220 N LEU A 54 SHEET 10 B13 PHE A 198 LEU A 202 -1 N GLN A 201 O SER A 221 SHEET 11 B13 PHE A 389 ASP A 394 -1 O PHE A 393 N PHE A 198 SHEET 12 B13 ARG A 399 SER A 405 -1 O GLY A 401 N VAL A 392 SHEET 13 B13 TYR A 232 PRO A 240 -1 N THR A 239 O ILE A 400 SHEET 1 C 5 GLU A 248 VAL A 249 0 SHEET 2 C 5 SER A 273 VAL A 275 -1 O SER A 273 N VAL A 249 SHEET 3 C 5 THR A 379 MET A 381 1 O MET A 381 N ILE A 274 SHEET 4 C 5 LEU A 282 PRO A 285 -1 N ARG A 283 O VAL A 380 SHEET 5 C 5 ILE A 372 SER A 375 1 O SER A 373 N LEU A 284 SHEET 1 D 5 GLN A 259 ASP A 260 0 SHEET 2 D 5 ILE A 251 ILE A 256 -1 N ILE A 256 O GLN A 259 SHEET 3 D 5 ILE A 331 MET A 336 -1 O TYR A 334 N VAL A 252 SHEET 4 D 5 GLN A 342 ILE A 348 -1 O ILE A 348 N ILE A 331 SHEET 5 D 5 ALA A 417 VAL A 423 -1 O GLU A 419 N ARG A 345 SHEET 1 E 3 VAL A 316 GLN A 319 0 SHEET 2 E 3 ASP A 365 PHE A 370 -1 O TYR A 368 N VAL A 316 SHEET 3 E 3 LEU A 354 PRO A 356 -1 N ARG A 355 O LYS A 369 SSBOND 1 CYS A 203 CYS A 407 1555 1555 2.11 SSBOND 2 CYS A 265 CYS A 430 1555 1555 2.03 SSBOND 3 CYS A 317 CYS A 367 1555 1555 2.10 CISPEP 1 SER A 70 PRO A 71 0 2.35 CISPEP 2 ARG A 176 PRO A 177 0 -3.73 CISPEP 3 TYR A 270 ASP A 271 0 6.30 CISPEP 4 GLY A 420 PRO A 421 0 -1.44 SITE 1 AC1 21 GLY A 59 GLN A 60 LEU A 78 ASP A 80 SITE 2 AC1 21 GLY A 82 SER A 83 PRO A 118 TYR A 119 SITE 3 AC1 21 THR A 120 GLN A 121 ILE A 158 TYR A 246 SITE 4 AC1 21 ASP A 276 GLY A 278 THR A 279 THR A 280 SITE 5 AC1 21 ASN A 281 ARG A 283 SER A 373 HOH A 601 SITE 6 AC1 21 HOH A 692 CRYST1 47.760 76.710 103.880 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020938 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009626 0.00000