HEADER TRANSFERASE 15-FEB-12 4DQ6 TITLE CRYSTAL STRUCTURE OF PLP-BOUND PUTATIVE AMINOTRANSFERASE FROM TITLE 2 CLOSTRIDIUM DIFFICILE 630 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PYRIDOXAL PHOSPHATE-DEPENDENT TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM DIFFICILE; SOURCE 3 ORGANISM_TAXID: 272563; SOURCE 4 STRAIN: 630; SOURCE 5 GENE: CD2733, CD630_27330; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, CSGID, INTERNAL ALDIMINE WITH PYRIDOXALPHOSPHATE, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.G.SHABALIN,O.ONOPRIYENKO,M.KUDRITSKA,M.CHRUSZCZ,S.GRIMSHAW, AUTHOR 2 P.J.POREBSKI,D.R.COOPER,A.SAVCHENKO,W.F.ANDERSON,W.MINOR,CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 13-SEP-23 4DQ6 1 REMARK REVDAT 3 13-APR-22 4DQ6 1 AUTHOR JRNL REMARK SEQADV REVDAT 3 2 1 LINK REVDAT 2 15-NOV-17 4DQ6 1 REMARK REVDAT 1 29-FEB-12 4DQ6 0 JRNL AUTH I.G.SHABALIN,O.ONOPRIYENKO,M.KUDRITSKA,S.GRIMSHAW, JRNL AUTH 2 M.CHRUSZCZ,P.J.POREBSKI,D.R.COOPER,A.SAVCHENKO,W.F.ANDERSON, JRNL AUTH 3 W.MINOR JRNL TITL CRYSTAL STRUCTURES OF PUTATIVE AMINOTRANSFERASE FROM JRNL TITL 2 CLOSTRIDIUM DIFFICILE 630 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 118099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5910 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7595 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 439 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6258 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 1032 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.23000 REMARK 3 B22 (A**2) : -0.65000 REMARK 3 B33 (A**2) : 2.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.993 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6527 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4421 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8857 ; 1.815 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10899 ; 1.686 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 802 ; 6.070 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 311 ;35.538 ;25.563 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1211 ;13.357 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;14.353 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 971 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7179 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1247 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6320 19.2920 48.4460 REMARK 3 T TENSOR REMARK 3 T11: 0.0659 T22: 0.1041 REMARK 3 T33: 0.0252 T12: 0.0016 REMARK 3 T13: 0.0033 T23: -0.0466 REMARK 3 L TENSOR REMARK 3 L11: 1.7044 L22: 0.2259 REMARK 3 L33: 0.1136 L12: 0.2505 REMARK 3 L13: 0.0566 L23: -0.1354 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: 0.3265 S13: -0.1948 REMARK 3 S21: -0.0429 S22: 0.0138 S23: -0.0281 REMARK 3 S31: 0.0221 S32: 0.0359 S33: -0.0061 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 266 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6000 33.1410 70.1010 REMARK 3 T TENSOR REMARK 3 T11: 0.0801 T22: 0.0713 REMARK 3 T33: 0.0211 T12: -0.0031 REMARK 3 T13: 0.0133 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 1.6884 L22: 0.3381 REMARK 3 L33: 0.0727 L12: 0.2015 REMARK 3 L13: 0.1570 L23: -0.0743 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: -0.2132 S13: 0.1731 REMARK 3 S21: 0.0427 S22: -0.0291 S23: 0.0282 REMARK 3 S31: 0.0058 S32: -0.0240 S33: 0.0135 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 267 A 388 REMARK 3 ORIGIN FOR THE GROUP (A): -11.5150 16.5900 56.1290 REMARK 3 T TENSOR REMARK 3 T11: 0.0566 T22: 0.0424 REMARK 3 T33: 0.0359 T12: -0.0030 REMARK 3 T13: 0.0102 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 1.2949 L22: 0.3745 REMARK 3 L33: 0.1876 L12: 0.0754 REMARK 3 L13: -0.0303 L23: -0.0629 REMARK 3 S TENSOR REMARK 3 S11: -0.0157 S12: 0.1501 S13: -0.1828 REMARK 3 S21: 0.0043 S22: 0.0093 S23: 0.0438 REMARK 3 S31: 0.0336 S32: 0.0018 S33: 0.0064 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 61 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3400 34.5110 48.5750 REMARK 3 T TENSOR REMARK 3 T11: 0.0786 T22: 0.1662 REMARK 3 T33: 0.0393 T12: 0.0074 REMARK 3 T13: 0.0096 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 1.2968 L22: 0.2965 REMARK 3 L33: 0.0646 L12: 0.3513 REMARK 3 L13: 0.0970 L23: 0.0171 REMARK 3 S TENSOR REMARK 3 S11: -0.0289 S12: 0.3514 S13: 0.1961 REMARK 3 S21: -0.0487 S22: -0.0043 S23: 0.0419 REMARK 3 S31: -0.0097 S32: -0.0031 S33: 0.0332 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 62 B 266 REMARK 3 ORIGIN FOR THE GROUP (A): 30.5490 20.6530 70.1150 REMARK 3 T TENSOR REMARK 3 T11: 0.0763 T22: 0.0324 REMARK 3 T33: 0.0250 T12: -0.0023 REMARK 3 T13: -0.0009 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.2499 L22: 0.2430 REMARK 3 L33: 0.2246 L12: 0.1204 REMARK 3 L13: 0.1468 L23: 0.0751 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: -0.0665 S13: -0.1717 REMARK 3 S21: 0.0401 S22: -0.0132 S23: -0.0284 REMARK 3 S31: -0.0033 S32: -0.0070 S33: -0.0256 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 267 B 388 REMARK 3 ORIGIN FOR THE GROUP (A): 37.6270 37.0780 56.1230 REMARK 3 T TENSOR REMARK 3 T11: 0.0630 T22: 0.0558 REMARK 3 T33: 0.0258 T12: -0.0018 REMARK 3 T13: 0.0053 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 1.1506 L22: 0.4037 REMARK 3 L33: 0.2832 L12: 0.1628 REMARK 3 L13: 0.1095 L23: 0.0835 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: 0.2128 S13: 0.1203 REMARK 3 S21: -0.0046 S22: 0.0129 S23: -0.0465 REMARK 3 S31: -0.0509 S32: 0.0269 S33: 0.0112 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4DQ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97718 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 118460 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : 0.07200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.49300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4DGT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 0.3M NACL, 10MM HEPES PH 7.5. REMARK 280 PRECIPITANT: 25%PEG 2K MME, 0.2M NA CHLORIDE, 0.1M NA CITRATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.04700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 24 CD CE NZ REMARK 470 LYS A 25 CD CE NZ REMARK 470 ARG A 317 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 337 CG CD OE1 OE2 REMARK 470 GLN A 353 CG CD OE1 NE2 REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 24 CG CD CE NZ REMARK 470 GLU B 337 CG CD OE1 OE2 REMARK 470 GLU B 340 CG CD OE1 OE2 REMARK 470 GLN B 353 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 35 -84.69 -111.01 REMARK 500 ASP A 40 49.61 -95.06 REMARK 500 TYR A 121 119.49 -28.95 REMARK 500 GLN A 243 91.91 62.06 REMARK 500 LYS A 268 -33.16 -130.48 REMARK 500 THR A 322 167.75 70.75 REMARK 500 TRP B 35 -86.26 -109.43 REMARK 500 ASP B 40 50.78 -96.61 REMARK 500 TYR B 121 117.02 -24.26 REMARK 500 GLN B 243 93.08 68.27 REMARK 500 THR B 322 165.86 71.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DGT RELATED DB: PDB REMARK 900 THE SAME PROTEIN CRYSTALLIZED WITH MAGNESIUM REMARK 900 RELATED ID: CSGID-IDP05302 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: IDP05302 RELATED DB: TARGETTRACK DBREF 4DQ6 A 1 388 UNP Q183G9 Q183G9_CLOD6 1 388 DBREF 4DQ6 B 1 388 UNP Q183G9 Q183G9_CLOD6 1 388 SEQADV 4DQ6 SER A -2 UNP Q183G9 EXPRESSION TAG SEQADV 4DQ6 ASN A -1 UNP Q183G9 EXPRESSION TAG SEQADV 4DQ6 ALA A 0 UNP Q183G9 EXPRESSION TAG SEQADV 4DQ6 SER B -2 UNP Q183G9 EXPRESSION TAG SEQADV 4DQ6 ASN B -1 UNP Q183G9 EXPRESSION TAG SEQADV 4DQ6 ALA B 0 UNP Q183G9 EXPRESSION TAG SEQRES 1 A 391 SER ASN ALA MET ASN TYR ASN PHE ASN GLU ILE VAL ASP SEQRES 2 A 391 ARG SER ASN ASN PHE SER SER LYS TRP SER GLU MET GLU SEQRES 3 A 391 LYS LYS TYR GLY THR ASN ASP LEU LEU PRO MET TRP VAL SEQRES 4 A 391 ALA ASP MET ASP PHE LYS ALA ALA PRO CYS ILE ILE ASP SEQRES 5 A 391 SER LEU LYS ASN ARG LEU GLU GLN GLU ILE TYR GLY TYR SEQRES 6 A 391 THR THR ARG PRO ASP SER TYR ASN GLU SER ILE VAL ASN SEQRES 7 A 391 TRP LEU TYR ARG ARG HIS ASN TRP LYS ILE LYS SER GLU SEQRES 8 A 391 TRP LEU ILE TYR SER PRO GLY VAL ILE PRO ALA ILE SER SEQRES 9 A 391 LEU LEU ILE ASN GLU LEU THR LYS ALA ASN ASP LYS ILE SEQRES 10 A 391 MET ILE GLN GLU PRO VAL TYR SER PRO PHE ASN SER VAL SEQRES 11 A 391 VAL LYS ASN ASN ASN ARG GLU LEU ILE ILE SER PRO LEU SEQRES 12 A 391 GLN LYS LEU GLU ASN GLY ASN TYR ILE MET ASP TYR GLU SEQRES 13 A 391 ASP ILE GLU ASN LYS ILE LYS ASP VAL LYS LEU PHE ILE SEQRES 14 A 391 LEU CYS ASN PRO HIS ASN PRO VAL GLY ARG VAL TRP THR SEQRES 15 A 391 LYS ASP GLU LEU LYS LYS LEU GLY ASP ILE CYS LEU LYS SEQRES 16 A 391 HIS ASN VAL LYS ILE ILE SER ASP GLU ILE HIS SER ASP SEQRES 17 A 391 ILE ILE LEU LYS LYS HIS LYS HIS ILE PRO MET ALA SER SEQRES 18 A 391 ILE SER LYS GLU PHE GLU LYS ASN THR ILE THR CYS MET SEQRES 19 A 391 ALA PRO THR LYS THR PHE ASN ILE ALA GLY LEU GLN SER SEQRES 20 A 391 SER TYR VAL VAL LEU PRO ASP GLU LYS ASP TYR LYS LEU SEQRES 21 A 391 LEU ASP ASP ALA PHE THR ARG ILE ASP ILE LYS ARG ASN SEQRES 22 A 391 ASN CYS PHE SER LEU VAL ALA THR GLU ALA SER TYR ASN SEQRES 23 A 391 ASN GLY GLU SER TRP LEU GLU SER PHE LEU GLU TYR LEU SEQRES 24 A 391 GLU SER ASN ILE ASP PHE ALA ILE LYS TYR ILE ASN GLU SEQRES 25 A 391 ASN MET PRO LYS LEU LYS VAL ARG LYS PRO GLU GLY THR SEQRES 26 A 391 TYR LEU LEU TRP VAL ASP PHE SER ALA LEU GLY LEU SER SEQRES 27 A 391 ASP GLU GLU LEU GLU SER ILE LEU VAL GLN LYS GLY LYS SEQRES 28 A 391 VAL ALA LEU ASN GLN GLY ASN SER PHE GLY ILE GLY GLY SEQRES 29 A 391 SER GLY TYR GLN ARG ILE ASN LEU ALA CYS PRO ARG SER SEQRES 30 A 391 MET LEU GLU GLU ALA LEU ILE ARG ILE LYS ASN ALA ILE SEQRES 31 A 391 ASN SEQRES 1 B 391 SER ASN ALA MET ASN TYR ASN PHE ASN GLU ILE VAL ASP SEQRES 2 B 391 ARG SER ASN ASN PHE SER SER LYS TRP SER GLU MET GLU SEQRES 3 B 391 LYS LYS TYR GLY THR ASN ASP LEU LEU PRO MET TRP VAL SEQRES 4 B 391 ALA ASP MET ASP PHE LYS ALA ALA PRO CYS ILE ILE ASP SEQRES 5 B 391 SER LEU LYS ASN ARG LEU GLU GLN GLU ILE TYR GLY TYR SEQRES 6 B 391 THR THR ARG PRO ASP SER TYR ASN GLU SER ILE VAL ASN SEQRES 7 B 391 TRP LEU TYR ARG ARG HIS ASN TRP LYS ILE LYS SER GLU SEQRES 8 B 391 TRP LEU ILE TYR SER PRO GLY VAL ILE PRO ALA ILE SER SEQRES 9 B 391 LEU LEU ILE ASN GLU LEU THR LYS ALA ASN ASP LYS ILE SEQRES 10 B 391 MET ILE GLN GLU PRO VAL TYR SER PRO PHE ASN SER VAL SEQRES 11 B 391 VAL LYS ASN ASN ASN ARG GLU LEU ILE ILE SER PRO LEU SEQRES 12 B 391 GLN LYS LEU GLU ASN GLY ASN TYR ILE MET ASP TYR GLU SEQRES 13 B 391 ASP ILE GLU ASN LYS ILE LYS ASP VAL LYS LEU PHE ILE SEQRES 14 B 391 LEU CYS ASN PRO HIS ASN PRO VAL GLY ARG VAL TRP THR SEQRES 15 B 391 LYS ASP GLU LEU LYS LYS LEU GLY ASP ILE CYS LEU LYS SEQRES 16 B 391 HIS ASN VAL LYS ILE ILE SER ASP GLU ILE HIS SER ASP SEQRES 17 B 391 ILE ILE LEU LYS LYS HIS LYS HIS ILE PRO MET ALA SER SEQRES 18 B 391 ILE SER LYS GLU PHE GLU LYS ASN THR ILE THR CYS MET SEQRES 19 B 391 ALA PRO THR LYS THR PHE ASN ILE ALA GLY LEU GLN SER SEQRES 20 B 391 SER TYR VAL VAL LEU PRO ASP GLU LYS ASP TYR LYS LEU SEQRES 21 B 391 LEU ASP ASP ALA PHE THR ARG ILE ASP ILE LYS ARG ASN SEQRES 22 B 391 ASN CYS PHE SER LEU VAL ALA THR GLU ALA SER TYR ASN SEQRES 23 B 391 ASN GLY GLU SER TRP LEU GLU SER PHE LEU GLU TYR LEU SEQRES 24 B 391 GLU SER ASN ILE ASP PHE ALA ILE LYS TYR ILE ASN GLU SEQRES 25 B 391 ASN MET PRO LYS LEU LYS VAL ARG LYS PRO GLU GLY THR SEQRES 26 B 391 TYR LEU LEU TRP VAL ASP PHE SER ALA LEU GLY LEU SER SEQRES 27 B 391 ASP GLU GLU LEU GLU SER ILE LEU VAL GLN LYS GLY LYS SEQRES 28 B 391 VAL ALA LEU ASN GLN GLY ASN SER PHE GLY ILE GLY GLY SEQRES 29 B 391 SER GLY TYR GLN ARG ILE ASN LEU ALA CYS PRO ARG SER SEQRES 30 B 391 MET LEU GLU GLU ALA LEU ILE ARG ILE LYS ASN ALA ILE SEQRES 31 B 391 ASN HET PLP A 401 15 HET CL A 402 1 HET CL A 403 1 HET PLP B 401 15 HET CL B 402 1 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM CL CHLORIDE ION HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 CL 3(CL 1-) FORMUL 8 HOH *1032(H2 O) HELIX 1 1 SER A 16 GLU A 21 1 6 HELIX 2 2 GLU A 21 GLY A 27 1 7 HELIX 3 3 ALA A 44 GLU A 56 1 13 HELIX 4 4 PRO A 66 ASN A 82 1 17 HELIX 5 5 LYS A 86 GLU A 88 5 3 HELIX 6 6 GLY A 95 THR A 108 1 14 HELIX 7 7 SER A 122 ASN A 131 1 10 HELIX 8 8 ASP A 151 ILE A 159 1 9 HELIX 9 9 THR A 179 HIS A 193 1 15 HELIX 10 10 PRO A 215 ILE A 219 5 5 HELIX 11 11 SER A 220 ASN A 226 1 7 HELIX 12 12 PRO A 233 ASN A 238 1 6 HELIX 13 13 ILE A 239 GLN A 243 5 5 HELIX 14 14 ASP A 251 ILE A 265 1 15 HELIX 15 15 ASN A 271 GLY A 285 1 15 HELIX 16 16 GLY A 285 MET A 311 1 27 HELIX 17 17 SER A 330 GLY A 333 5 4 HELIX 18 18 SER A 335 LYS A 346 1 12 HELIX 19 19 ASN A 355 GLY A 358 5 4 HELIX 20 20 PRO A 372 ASN A 388 1 17 HELIX 21 21 SER B 16 GLU B 21 1 6 HELIX 22 22 GLU B 21 GLY B 27 1 7 HELIX 23 23 ALA B 44 GLN B 57 1 14 HELIX 24 24 PRO B 66 ASN B 82 1 17 HELIX 25 25 LYS B 86 GLU B 88 5 3 HELIX 26 26 GLY B 95 THR B 108 1 14 HELIX 27 27 SER B 122 ASN B 131 1 10 HELIX 28 28 ASP B 151 ILE B 159 1 9 HELIX 29 29 THR B 179 ASN B 194 1 16 HELIX 30 30 PRO B 215 ILE B 219 5 5 HELIX 31 31 SER B 220 ASN B 226 1 7 HELIX 32 32 PRO B 233 ASN B 238 1 6 HELIX 33 33 ILE B 239 GLN B 243 5 5 HELIX 34 34 ASP B 251 ILE B 265 1 15 HELIX 35 35 ASN B 271 GLY B 285 1 15 HELIX 36 36 GLY B 285 MET B 311 1 27 HELIX 37 37 SER B 330 GLY B 333 5 4 HELIX 38 38 SER B 335 LYS B 346 1 12 HELIX 39 39 ASN B 355 GLY B 358 5 4 HELIX 40 40 PRO B 372 ASN B 388 1 17 SHEET 1 A 2 LEU A 32 PRO A 33 0 SHEET 2 A 2 VAL A 349 ALA A 350 1 O ALA A 350 N LEU A 32 SHEET 1 B 7 LEU A 90 SER A 93 0 SHEET 2 B 7 SER A 245 VAL A 248 -1 O VAL A 247 N ILE A 91 SHEET 3 B 7 THR A 227 MET A 231 -1 N THR A 229 O VAL A 248 SHEET 4 B 7 LYS A 196 ASP A 200 1 N SER A 199 O ILE A 228 SHEET 5 B 7 VAL A 162 CYS A 168 1 N LEU A 167 O ASP A 200 SHEET 6 B 7 LYS A 113 ILE A 116 1 N MET A 115 O ILE A 166 SHEET 7 B 7 GLU A 134 ILE A 137 1 O ILE A 136 N ILE A 114 SHEET 1 C 2 GLN A 141 LYS A 142 0 SHEET 2 C 2 TYR A 148 ILE A 149 -1 O ILE A 149 N GLN A 141 SHEET 1 D 4 LYS A 315 VAL A 316 0 SHEET 2 D 4 LEU A 324 ASP A 328 -1 O ASP A 328 N LYS A 315 SHEET 3 D 4 TYR A 364 ASN A 368 -1 O ILE A 367 N LEU A 325 SHEET 4 D 4 ASN A 352 GLN A 353 -1 N ASN A 352 O ARG A 366 SHEET 1 E 2 LEU B 32 PRO B 33 0 SHEET 2 E 2 VAL B 349 ALA B 350 1 O ALA B 350 N LEU B 32 SHEET 1 F 7 LEU B 90 SER B 93 0 SHEET 2 F 7 SER B 245 VAL B 248 -1 O VAL B 247 N ILE B 91 SHEET 3 F 7 THR B 227 MET B 231 -1 N THR B 229 O VAL B 248 SHEET 4 F 7 LYS B 196 ASP B 200 1 N SER B 199 O ILE B 228 SHEET 5 F 7 VAL B 162 CYS B 168 1 N LEU B 167 O ASP B 200 SHEET 6 F 7 LYS B 113 ILE B 116 1 N LYS B 113 O LYS B 163 SHEET 7 F 7 GLU B 134 ILE B 137 1 O ILE B 136 N ILE B 114 SHEET 1 G 2 GLN B 141 LYS B 142 0 SHEET 2 G 2 TYR B 148 ILE B 149 -1 O ILE B 149 N GLN B 141 SHEET 1 H 4 LYS B 315 VAL B 316 0 SHEET 2 H 4 LEU B 324 ASP B 328 -1 O ASP B 328 N LYS B 315 SHEET 3 H 4 TYR B 364 ASN B 368 -1 O ILE B 367 N LEU B 325 SHEET 4 H 4 ASN B 352 GLN B 353 -1 N ASN B 352 O ARG B 366 LINK NZ LYS A 235 C4A PLP A 401 1555 1555 1.28 LINK NZ LYS B 235 C4A PLP B 401 1555 1555 1.31 CISPEP 1 GLU A 118 PRO A 119 0 4.67 CISPEP 2 ASN A 169 PRO A 170 0 -2.06 CISPEP 3 ASN A 172 PRO A 173 0 24.41 CISPEP 4 GLU B 118 PRO B 119 0 8.22 CISPEP 5 ASN B 169 PRO B 170 0 -0.87 CISPEP 6 ASN B 172 PRO B 173 0 22.54 SITE 1 AC1 19 GLY A 95 VAL A 96 ILE A 97 PRO A 98 SITE 2 AC1 19 TYR A 121 CYS A 168 ASN A 172 ASP A 200 SITE 3 AC1 19 ILE A 202 HIS A 203 LYS A 235 HOH A 596 SITE 4 AC1 19 HOH A 685 HOH A 837 HOH A 861 HOH A 903 SITE 5 AC1 19 HOH A 965 TYR B 62 ASP B 266 SITE 1 AC2 4 ASN A 145 ASN A 147 ASN B 145 ASN B 147 SITE 1 AC3 4 MET A 311 PRO A 312 LYS A 313 HOH A 844 SITE 1 AC4 19 TYR A 62 ASP A 266 HOH A 778 GLY B 95 SITE 2 AC4 19 VAL B 96 ILE B 97 PRO B 98 TYR B 121 SITE 3 AC4 19 CYS B 168 ASN B 172 ASP B 200 ILE B 202 SITE 4 AC4 19 HIS B 203 LYS B 235 HOH B 617 HOH B 764 SITE 5 AC4 19 HOH B 794 HOH B 812 HOH B 871 SITE 1 AC5 3 MET B 311 PRO B 312 LYS B 313 CRYST1 79.426 56.094 85.275 90.00 99.33 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012590 0.000000 0.002069 0.00000 SCALE2 0.000000 0.017827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011884 0.00000