HEADER TRANSFERASE 15-FEB-12 4DQ8 TITLE CRYSTAL STRUCTURE OF ACETATE KINASE ACKA FROM MYCOBACTERIUM MARINUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACETOKINASE; COMPND 5 EC: 2.7.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM MARINUM; SOURCE 3 ORGANISM_TAXID: 216594; SOURCE 4 STRAIN: ATCC BAA-535 / M; SOURCE 5 GENE: ACKA, MMAR_0711; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAVA0421 KEYWDS ACETOKINASE, MYCOBACTERIUM, ATP-DEPENDENT, METABOLIC INTERMEDIATE KEYWDS 2 BIOSYNTHESIS, ACETYL-COA BIOSYNTHESIS, CYTOPLASMIC, TRANSFERASE, KEYWDS 3 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 4 INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 4DQ8 1 SEQADV REVDAT 2 22-APR-15 4DQ8 1 JRNL REVDAT 1 22-FEB-12 4DQ8 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 41316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2099 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2631 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5385 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.277 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.225 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.607 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5492 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3540 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7487 ; 1.318 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8615 ; 0.930 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 739 ; 6.170 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 218 ;32.824 ;22.936 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 775 ;14.406 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;19.334 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 870 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6334 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1124 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 386 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7240 -1.6100 16.5162 REMARK 3 T TENSOR REMARK 3 T11: 0.1346 T22: 0.2549 REMARK 3 T33: 0.1180 T12: 0.0850 REMARK 3 T13: 0.0214 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.9705 L22: 1.2255 REMARK 3 L33: 0.3924 L12: 0.1365 REMARK 3 L13: 0.0635 L23: -0.1771 REMARK 3 S TENSOR REMARK 3 S11: 0.0341 S12: 0.4007 S13: -0.1534 REMARK 3 S21: 0.0259 S22: 0.0560 S23: 0.1007 REMARK 3 S31: 0.1801 S32: 0.0441 S33: -0.0901 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 385 REMARK 3 ORIGIN FOR THE GROUP (A): -16.4528 31.4888 26.6904 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.1016 REMARK 3 T33: 0.3120 T12: 0.0734 REMARK 3 T13: 0.1609 T23: 0.1286 REMARK 3 L TENSOR REMARK 3 L11: 1.0854 L22: 0.6715 REMARK 3 L33: 0.8888 L12: 0.3377 REMARK 3 L13: -0.1782 L23: 0.5225 REMARK 3 S TENSOR REMARK 3 S11: 0.1355 S12: 0.1899 S13: 0.5108 REMARK 3 S21: 0.0914 S22: 0.1124 S23: 0.1107 REMARK 3 S31: -0.1656 S32: 0.0207 S33: -0.2479 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES WITH TLS ADDED. HYDROGENS HAVE REMARK 3 BEEN ADDED IN THE RIDING POSITIONS. REMARK 4 REMARK 4 4DQ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41517 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3P4I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYMAA.00640.A.A1 PW29994 AT 14.2 MG/ML REMARK 280 AGAINST PACT C10 FOCUS SCREEN, 0.2 M MGCL2, 0.1 M HEPES, 18% PEG REMARK 280 6000 WITH 20% ETHYLENE GLYCOL AS CRYO-PROTECTANT, CRYSTAL REMARK 280 TRACKING ID 220845F4, PH 7.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.75000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.37000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.37000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.75000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 ARG A 5 REMARK 465 PRO A 6 REMARK 465 GLY A 42 REMARK 465 GLU A 43 REMARK 465 GLU A 44 REMARK 465 SER A 45 REMARK 465 SER A 46 REMARK 465 SER A 47 REMARK 465 VAL A 48 REMARK 465 ALA A 387 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 ARG B 5 REMARK 465 PRO B 6 REMARK 465 GLU B 43 REMARK 465 GLU B 44 REMARK 465 SER B 45 REMARK 465 ASP B 68 REMARK 465 LEU B 69 REMARK 465 GLN B 70 REMARK 465 SER B 71 REMARK 465 CYS B 72 REMARK 465 VAL B 386 REMARK 465 ALA B 387 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 7 CG OD1 ND2 REMARK 470 ARG A 8 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 SER A 29 OG REMARK 470 MET A 31 CG SD CE REMARK 470 ILE A 38 CG1 CG2 CD1 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 41 CG1 CG2 CD1 REMARK 470 ASP A 52 CG OD1 OD2 REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 57 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 ASP A 66 CG OD1 OD2 REMARK 470 ILE A 67 CG1 CG2 CD1 REMARK 470 GLN A 70 CG CD OE1 NE2 REMARK 470 LEU A 93 CG CD1 CD2 REMARK 470 ILE A 99 CG1 CG2 CD1 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 ASP A 129 CG OD1 OD2 REMARK 470 VAL A 160 CG1 CG2 REMARK 470 ARG A 273 CG CD NE CZ NH1 NH2 REMARK 470 SER A 351 OG REMARK 470 SER A 383 OG REMARK 470 VAL A 384 CG1 CG2 REMARK 470 VAL A 386 CG1 CG2 REMARK 470 ARG B 8 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 9 CG1 CG2 REMARK 470 SER B 17 OG REMARK 470 LEU B 20 CG CD1 CD2 REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 LEU B 24 CG CD1 CD2 REMARK 470 ASP B 28 CG OD1 OD2 REMARK 470 MET B 31 CG SD CE REMARK 470 SER B 32 OG REMARK 470 ASN B 37 CG OD1 ND2 REMARK 470 ILE B 38 CG1 CG2 CD1 REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 ARG B 40 CG CD NE CZ NH1 NH2 REMARK 470 SER B 46 OG REMARK 470 VAL B 48 CG1 CG2 REMARK 470 ASP B 52 CG OD1 OD2 REMARK 470 ARG B 56 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 57 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 ILE B 61 CG1 CG2 CD1 REMARK 470 LEU B 62 CG CD1 CD2 REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 470 ASP B 65 CG OD1 OD2 REMARK 470 ASP B 66 CG OD1 OD2 REMARK 470 ILE B 67 CG1 CG2 CD1 REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 99 CG1 CG2 CD1 REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 VAL B 117 CG1 CG2 REMARK 470 ILE B 120 CG1 CG2 CD1 REMARK 470 LEU B 127 CG CD1 CD2 REMARK 470 ASP B 129 CG OD1 OD2 REMARK 470 VAL B 130 CG1 CG2 REMARK 470 GLN B 143 CG CD OE1 NE2 REMARK 470 ASN B 200 CG OD1 ND2 REMARK 470 ARG B 211 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 273 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 274 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 287 CG CD OE1 OE2 REMARK 470 ARG B 345 CG CD NE CZ NH1 NH2 REMARK 470 SER B 383 OG REMARK 470 VAL B 384 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 360 O HOH B 436 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 18 15.02 -141.95 REMARK 500 ASN A 37 111.92 -161.47 REMARK 500 ARG A 40 -29.20 98.10 REMARK 500 SER A 71 86.69 -156.12 REMARK 500 CYS A 72 18.35 -159.23 REMARK 500 ASP A 129 34.28 -86.79 REMARK 500 MET A 227 -167.20 -123.39 REMARK 500 SER A 261 -156.16 -126.45 REMARK 500 ALA A 318 168.45 69.66 REMARK 500 LEU A 385 -78.06 -72.32 REMARK 500 SER B 18 46.76 -155.86 REMARK 500 SER B 19 147.39 -174.06 REMARK 500 ASN B 37 118.03 -163.34 REMARK 500 ARG B 40 18.04 50.83 REMARK 500 GLU B 64 1.87 -67.95 REMARK 500 ASP B 66 61.87 60.27 REMARK 500 TYR B 89 31.04 -142.94 REMARK 500 ASN B 95 -165.21 -170.38 REMARK 500 LEU B 127 61.64 -157.61 REMARK 500 ASP B 154 115.69 -38.91 REMARK 500 ALA B 318 172.88 77.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYMAA.00640.A RELATED DB: TARGETTRACK DBREF 4DQ8 A 1 387 UNP B2HPZ3 B2HPZ3_MYCMM 1 387 DBREF 4DQ8 B 1 387 UNP B2HPZ3 B2HPZ3_MYCMM 1 387 SEQADV 4DQ8 GLY A -3 UNP B2HPZ3 EXPRESSION TAG SEQADV 4DQ8 PRO A -2 UNP B2HPZ3 EXPRESSION TAG SEQADV 4DQ8 GLY A -1 UNP B2HPZ3 EXPRESSION TAG SEQADV 4DQ8 SER A 0 UNP B2HPZ3 EXPRESSION TAG SEQADV 4DQ8 GLY B -3 UNP B2HPZ3 EXPRESSION TAG SEQADV 4DQ8 PRO B -2 UNP B2HPZ3 EXPRESSION TAG SEQADV 4DQ8 GLY B -1 UNP B2HPZ3 EXPRESSION TAG SEQADV 4DQ8 SER B 0 UNP B2HPZ3 EXPRESSION TAG SEQRES 1 A 391 GLY PRO GLY SER MET SER ALA SER ARG PRO ASN ARG VAL SEQRES 2 A 391 VAL LEU VAL LEU ASN SER GLY SER SER SER LEU LYS PHE SEQRES 3 A 391 GLN LEU VAL GLU PRO ASP SER GLY MET SER ARG ALA THR SEQRES 4 A 391 GLY ASN ILE GLU ARG ILE GLY GLU GLU SER SER SER VAL SEQRES 5 A 391 PRO ASP HIS ASP ALA ALA LEU ARG ARG VAL PHE GLU ILE SEQRES 6 A 391 LEU ALA GLU ASP ASP ILE ASP LEU GLN SER CYS GLY LEU SEQRES 7 A 391 VAL ALA VAL GLY HIS ARG VAL VAL HIS GLY GLY LYS ASP SEQRES 8 A 391 PHE TYR GLU PRO THR LEU LEU ASN ASP ALA VAL ILE GLY SEQRES 9 A 391 LYS LEU ASP GLU LEU SER PRO LEU ALA PRO LEU HIS ASN SEQRES 10 A 391 PRO PRO ALA VAL LEU CYS ILE ARG VAL ALA ARG ALA LEU SEQRES 11 A 391 LEU PRO ASP VAL PRO HIS ILE ALA VAL PHE ASP THR ALA SEQRES 12 A 391 PHE PHE HIS GLN LEU PRO PRO ALA ALA ALA THR TYR ALA SEQRES 13 A 391 ILE ASP ARG GLU LEU ALA ASP VAL TRP LYS ILE ARG ARG SEQRES 14 A 391 TYR GLY PHE HIS GLY THR SER HIS GLU TYR VAL SER GLN SEQRES 15 A 391 GLN ALA ALA GLU PHE LEU GLY LYS PRO ILE GLY ASP LEU SEQRES 16 A 391 ASN GLN ILE VAL LEU HIS LEU GLY ASN GLY ALA SER ALA SEQRES 17 A 391 SER ALA VAL ALA GLY GLY ARG PRO VAL GLU THR SER MET SEQRES 18 A 391 GLY LEU THR PRO LEU GLU GLY LEU VAL MET GLY THR ARG SEQRES 19 A 391 SER GLY ASP LEU ASP PRO GLY VAL ILE GLY TYR LEU TRP SEQRES 20 A 391 ARG THR ALA LYS LEU GLY VAL ASP GLU ILE GLU SER MET SEQRES 21 A 391 LEU ASN HIS ARG SER GLY MET LEU GLY LEU ALA GLY GLU SEQRES 22 A 391 ARG ASP PHE ARG ARG LEU ARG ALA MET ILE ASP ASP GLY SEQRES 23 A 391 ASP PRO ALA ALA GLU LEU ALA TYR ASP VAL PHE ILE HIS SEQRES 24 A 391 ARG LEU ARG LYS TYR VAL GLY ALA TYR LEU ALA VAL LEU SEQRES 25 A 391 GLY HIS THR ASP VAL VAL SER PHE THR ALA GLY ILE GLY SEQRES 26 A 391 GLU HIS ASP ALA ALA VAL ARG ARG ASP THR LEU ALA GLY SEQRES 27 A 391 MET ALA GLU LEU GLY ILE SER LEU ASP GLU ARG ARG ASN SEQRES 28 A 391 ALA CYS PRO SER GLY GLY ALA ARG ARG ILE SER ALA ASP SEQRES 29 A 391 ASP SER PRO VAL THR VAL LEU VAL ILE PRO THR ASN GLU SEQRES 30 A 391 GLU LEU ALA ILE ALA ARG HIS CYS CYS SER VAL LEU VAL SEQRES 31 A 391 ALA SEQRES 1 B 391 GLY PRO GLY SER MET SER ALA SER ARG PRO ASN ARG VAL SEQRES 2 B 391 VAL LEU VAL LEU ASN SER GLY SER SER SER LEU LYS PHE SEQRES 3 B 391 GLN LEU VAL GLU PRO ASP SER GLY MET SER ARG ALA THR SEQRES 4 B 391 GLY ASN ILE GLU ARG ILE GLY GLU GLU SER SER SER VAL SEQRES 5 B 391 PRO ASP HIS ASP ALA ALA LEU ARG ARG VAL PHE GLU ILE SEQRES 6 B 391 LEU ALA GLU ASP ASP ILE ASP LEU GLN SER CYS GLY LEU SEQRES 7 B 391 VAL ALA VAL GLY HIS ARG VAL VAL HIS GLY GLY LYS ASP SEQRES 8 B 391 PHE TYR GLU PRO THR LEU LEU ASN ASP ALA VAL ILE GLY SEQRES 9 B 391 LYS LEU ASP GLU LEU SER PRO LEU ALA PRO LEU HIS ASN SEQRES 10 B 391 PRO PRO ALA VAL LEU CYS ILE ARG VAL ALA ARG ALA LEU SEQRES 11 B 391 LEU PRO ASP VAL PRO HIS ILE ALA VAL PHE ASP THR ALA SEQRES 12 B 391 PHE PHE HIS GLN LEU PRO PRO ALA ALA ALA THR TYR ALA SEQRES 13 B 391 ILE ASP ARG GLU LEU ALA ASP VAL TRP LYS ILE ARG ARG SEQRES 14 B 391 TYR GLY PHE HIS GLY THR SER HIS GLU TYR VAL SER GLN SEQRES 15 B 391 GLN ALA ALA GLU PHE LEU GLY LYS PRO ILE GLY ASP LEU SEQRES 16 B 391 ASN GLN ILE VAL LEU HIS LEU GLY ASN GLY ALA SER ALA SEQRES 17 B 391 SER ALA VAL ALA GLY GLY ARG PRO VAL GLU THR SER MET SEQRES 18 B 391 GLY LEU THR PRO LEU GLU GLY LEU VAL MET GLY THR ARG SEQRES 19 B 391 SER GLY ASP LEU ASP PRO GLY VAL ILE GLY TYR LEU TRP SEQRES 20 B 391 ARG THR ALA LYS LEU GLY VAL ASP GLU ILE GLU SER MET SEQRES 21 B 391 LEU ASN HIS ARG SER GLY MET LEU GLY LEU ALA GLY GLU SEQRES 22 B 391 ARG ASP PHE ARG ARG LEU ARG ALA MET ILE ASP ASP GLY SEQRES 23 B 391 ASP PRO ALA ALA GLU LEU ALA TYR ASP VAL PHE ILE HIS SEQRES 24 B 391 ARG LEU ARG LYS TYR VAL GLY ALA TYR LEU ALA VAL LEU SEQRES 25 B 391 GLY HIS THR ASP VAL VAL SER PHE THR ALA GLY ILE GLY SEQRES 26 B 391 GLU HIS ASP ALA ALA VAL ARG ARG ASP THR LEU ALA GLY SEQRES 27 B 391 MET ALA GLU LEU GLY ILE SER LEU ASP GLU ARG ARG ASN SEQRES 28 B 391 ALA CYS PRO SER GLY GLY ALA ARG ARG ILE SER ALA ASP SEQRES 29 B 391 ASP SER PRO VAL THR VAL LEU VAL ILE PRO THR ASN GLU SEQRES 30 B 391 GLU LEU ALA ILE ALA ARG HIS CYS CYS SER VAL LEU VAL SEQRES 31 B 391 ALA FORMUL 3 HOH *190(H2 O) HELIX 1 1 ASP A 50 ASP A 65 1 16 HELIX 2 2 ASP A 68 CYS A 72 5 5 HELIX 3 3 ASN A 95 SER A 106 1 12 HELIX 4 4 PRO A 107 ALA A 109 5 3 HELIX 5 5 HIS A 112 LEU A 127 1 16 HELIX 6 6 THR A 138 LEU A 144 5 7 HELIX 7 7 PRO A 145 THR A 150 1 6 HELIX 8 8 ASP A 154 TRP A 161 1 8 HELIX 9 9 HIS A 169 GLY A 185 1 17 HELIX 10 10 PRO A 187 ASP A 190 5 4 HELIX 11 11 ASP A 235 THR A 245 1 11 HELIX 12 12 GLY A 249 ARG A 260 1 12 HELIX 13 13 SER A 261 GLY A 268 1 8 HELIX 14 14 ASP A 271 ASP A 281 1 11 HELIX 15 15 ASP A 283 GLY A 309 1 27 HELIX 16 16 ALA A 318 ASP A 324 1 7 HELIX 17 17 ASP A 324 ALA A 333 1 10 HELIX 18 18 MET A 335 GLY A 339 5 5 HELIX 19 19 ASP A 343 CYS A 349 1 7 HELIX 20 20 ASN A 372 VAL A 384 1 13 HELIX 21 21 HIS B 51 GLU B 64 1 14 HELIX 22 22 ASN B 95 SER B 106 1 12 HELIX 23 23 PRO B 107 ALA B 109 5 3 HELIX 24 24 ASN B 113 LEU B 126 1 14 HELIX 25 25 THR B 138 HIS B 142 5 5 HELIX 26 26 PRO B 145 THR B 150 1 6 HELIX 27 27 ASP B 154 TRP B 161 1 8 HELIX 28 28 HIS B 169 GLY B 185 1 17 HELIX 29 29 PRO B 187 ASP B 190 5 4 HELIX 30 30 PRO B 236 THR B 245 1 10 HELIX 31 31 GLY B 249 ARG B 260 1 12 HELIX 32 32 SER B 261 GLY B 268 1 8 HELIX 33 33 ASP B 271 ASP B 281 1 11 HELIX 34 34 ASP B 283 GLY B 309 1 27 HELIX 35 35 ALA B 318 ASP B 324 1 7 HELIX 36 36 ASP B 324 ALA B 333 1 10 HELIX 37 37 MET B 335 GLY B 339 5 5 HELIX 38 38 ASP B 343 ALA B 348 1 6 HELIX 39 39 ASN B 372 VAL B 384 1 13 SHEET 1 A 6 SER A 32 ILE A 38 0 SHEET 2 A 6 LEU A 20 VAL A 25 -1 N PHE A 22 O GLY A 36 SHEET 3 A 6 VAL A 9 SER A 15 -1 N VAL A 12 O GLN A 23 SHEET 4 A 6 LEU A 74 VAL A 81 1 O GLY A 78 N LEU A 13 SHEET 5 A 6 HIS A 132 PHE A 136 1 O ILE A 133 N HIS A 79 SHEET 6 A 6 THR A 92 LEU A 93 -1 N THR A 92 O ALA A 134 SHEET 1 B 6 ARG A 211 THR A 215 0 SHEET 2 B 6 ALA A 202 ALA A 208 -1 N ALA A 206 O VAL A 213 SHEET 3 B 6 ASN A 192 LEU A 198 -1 N GLN A 193 O VAL A 207 SHEET 4 B 6 VAL A 313 THR A 317 1 O SER A 315 N LEU A 196 SHEET 5 B 6 THR A 365 VAL A 368 1 O LEU A 367 N VAL A 314 SHEET 6 B 6 ARG A 355 ARG A 356 -1 N ARG A 355 O VAL A 368 SHEET 1 C 6 SER B 32 ILE B 38 0 SHEET 2 C 6 SER B 19 VAL B 25 -1 N PHE B 22 O GLY B 36 SHEET 3 C 6 VAL B 9 GLY B 16 -1 N VAL B 10 O VAL B 25 SHEET 4 C 6 LEU B 74 VAL B 81 1 O GLY B 78 N LEU B 13 SHEET 5 C 6 HIS B 132 PHE B 136 1 O ILE B 133 N HIS B 79 SHEET 6 C 6 THR B 92 LEU B 93 -1 N THR B 92 O ALA B 134 SHEET 1 D 6 ARG B 211 THR B 215 0 SHEET 2 D 6 ALA B 202 ALA B 208 -1 N ALA B 206 O VAL B 213 SHEET 3 D 6 ASN B 192 LEU B 198 -1 N HIS B 197 O SER B 203 SHEET 4 D 6 VAL B 313 THR B 317 1 O SER B 315 N LEU B 196 SHEET 5 D 6 THR B 365 VAL B 368 1 O THR B 365 N VAL B 314 SHEET 6 D 6 ARG B 355 ARG B 356 -1 N ARG B 355 O VAL B 368 CRYST1 55.500 87.170 176.740 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018018 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011472 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005658 0.00000