HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 15-FEB-12 4DQA TITLE CRYSTAL STRUCTURE OF A PUTATIVE CARBOHYDRATE BINDING PROTEIN TITLE 2 (BACOVA_03559) FROM BACTEROIDES OVATUS ATCC 8483 AT 1.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 411476; SOURCE 4 STRAIN: ATCC 8483; SOURCE 5 GENE: BACOVA_03559; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS TWO DOMAINS STRUCTURE, DUF 1735, LAMININ_G_3 CONCANAVALIN A-LIKE KEYWDS 2 LECTIN/GLUCANASES SUPERFAMILY DOMAIN, STRUCTURAL GENOMICS, JOINT KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 4 PSI-BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4DQA 1 SEQADV LINK REVDAT 4 24-JAN-18 4DQA 1 JRNL REVDAT 3 15-NOV-17 4DQA 1 REMARK REVDAT 2 24-DEC-14 4DQA 1 TITLE REVDAT 1 21-MAR-12 4DQA 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (BACOVA_03559) JRNL TITL 2 FROM BACTEROIDES OVATUS ATCC 8483 AT 1.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 65902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1887 - 4.3223 0.99 2882 137 0.1764 0.1872 REMARK 3 2 4.3223 - 3.4324 1.00 2715 150 0.1431 0.1586 REMARK 3 3 3.4324 - 2.9991 1.00 2658 155 0.1517 0.1555 REMARK 3 4 2.9991 - 2.7251 1.00 2661 131 0.1506 0.1841 REMARK 3 5 2.7251 - 2.5299 1.00 2637 140 0.1425 0.1783 REMARK 3 6 2.5299 - 2.3808 1.00 2622 150 0.1446 0.1667 REMARK 3 7 2.3808 - 2.2616 1.00 2595 139 0.1402 0.1625 REMARK 3 8 2.2616 - 2.1632 1.00 2615 138 0.1366 0.1757 REMARK 3 9 2.1632 - 2.0799 1.00 2602 134 0.1367 0.1496 REMARK 3 10 2.0799 - 2.0082 1.00 2567 157 0.1385 0.1501 REMARK 3 11 2.0082 - 1.9454 1.00 2606 123 0.1425 0.1685 REMARK 3 12 1.9454 - 1.8898 1.00 2605 128 0.1417 0.1785 REMARK 3 13 1.8898 - 1.8401 1.00 2588 133 0.1504 0.1710 REMARK 3 14 1.8401 - 1.7952 1.00 2561 155 0.1483 0.1924 REMARK 3 15 1.7952 - 1.7544 1.00 2564 131 0.1604 0.1956 REMARK 3 16 1.7544 - 1.7170 1.00 2591 126 0.1568 0.1739 REMARK 3 17 1.7170 - 1.6827 1.00 2546 157 0.1636 0.1982 REMARK 3 18 1.6827 - 1.6509 1.00 2574 135 0.1668 0.1892 REMARK 3 19 1.6509 - 1.6215 1.00 2587 122 0.1865 0.2200 REMARK 3 20 1.6215 - 1.5940 1.00 2550 155 0.1981 0.2441 REMARK 3 21 1.5940 - 1.5683 1.00 2518 144 0.2150 0.2368 REMARK 3 22 1.5683 - 1.5441 1.00 2574 138 0.2243 0.2474 REMARK 3 23 1.5441 - 1.5214 1.00 2569 137 0.2398 0.2684 REMARK 3 24 1.5214 - 1.5000 1.00 2572 128 0.2580 0.2979 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 44.19 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.32110 REMARK 3 B22 (A**2) : -1.32110 REMARK 3 B33 (A**2) : 2.64220 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2884 REMARK 3 ANGLE : 1.284 3955 REMARK 3 CHIRALITY : 0.079 442 REMARK 3 PLANARITY : 0.007 512 REMARK 3 DIHEDRAL : 12.934 1061 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 32:159) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0643 70.1231 20.4950 REMARK 3 T TENSOR REMARK 3 T11: 0.1295 T22: 0.1099 REMARK 3 T33: 0.1428 T12: 0.0330 REMARK 3 T13: -0.0423 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 1.2582 L22: 1.9588 REMARK 3 L33: 1.1540 L12: -0.5293 REMARK 3 L13: -0.0400 L23: 1.0192 REMARK 3 S TENSOR REMARK 3 S11: 0.0620 S12: -0.0281 S13: -0.0607 REMARK 3 S21: -0.0032 S22: 0.0972 S23: 0.0123 REMARK 3 S31: 0.1331 S32: 0.2127 S33: -0.0843 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 160:380) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9847 25.9130 21.3118 REMARK 3 T TENSOR REMARK 3 T11: 0.0825 T22: 0.0907 REMARK 3 T33: 0.0489 T12: 0.0242 REMARK 3 T13: -0.0249 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.0297 L22: 1.7406 REMARK 3 L33: 0.4852 L12: -0.1969 REMARK 3 L13: -0.2970 L23: 0.1021 REMARK 3 S TENSOR REMARK 3 S11: 0.0585 S12: 0.1318 S13: -0.0146 REMARK 3 S21: -0.2332 S22: -0.0876 S23: 0.1510 REMARK 3 S31: 0.0331 S32: -0.0336 S33: 0.0110 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. REMARK 4 REMARK 4 4DQA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65989 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.183 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 0.84800 REMARK 200 R SYM FOR SHELL (I) : 0.84800 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CHLORIDE, 1.0M SODIUM REMARK 280 CITRATE, 0.1M TRIS PH 7.0, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.09100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 104.18200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.13650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 130.22750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.04550 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.09100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 104.18200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 130.22750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 78.13650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 26.04550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN A 27 REMARK 465 ASP A 28 REMARK 465 LEU A 29 REMARK 465 LEU A 30 REMARK 465 GLU A 31 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 38 OG REMARK 470 GLU A 46 CG CD OE1 OE2 REMARK 470 ASP A 47 CG OD1 OD2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 LYS A 100 CD CE NZ REMARK 470 LYS A 112 CE NZ REMARK 470 GLU A 126 CD OE1 OE2 REMARK 470 LYS A 129 CD CE NZ REMARK 470 LEU A 148 CG CD1 CD2 REMARK 470 LYS A 163 CE NZ REMARK 470 LYS A 178 CE NZ REMARK 470 LYS A 298 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H SER A 171 HD1 HIS A 173 1.26 REMARK 500 O HOH A 523 O HOH A 829 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 567 O HOH A 665 11555 2.14 REMARK 500 O HOH A 706 O HOH A 752 7455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 48 -4.86 71.20 REMARK 500 THR A 151 25.21 -143.00 REMARK 500 SER A 171 -41.04 -135.53 REMARK 500 ASN A 172 50.20 74.16 REMARK 500 ASN A 172 48.76 -147.29 REMARK 500 SER A 186 -74.70 -92.02 REMARK 500 ILE A 205 -71.16 -92.80 REMARK 500 VAL A 211 -58.86 -126.58 REMARK 500 MSE A 212 97.19 -160.79 REMARK 500 ASP A 218 56.47 -148.61 REMARK 500 ASP A 286 -125.92 57.97 REMARK 500 ARG A 293 132.57 -174.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-416724 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 27-380) WAS EXPRESSED WITH AN N- TERMINAL REMARK 999 PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4DQA A 27 380 UNP A7M0D0 A7M0D0_BACOV 27 380 SEQADV 4DQA GLY A 0 UNP A7M0D0 EXPRESSION TAG SEQRES 1 A 355 GLY ASN ASP LEU LEU GLU PRO LYS VAL TYR PHE GLU SER SEQRES 2 A 355 LYS GLU TYR ASN PHE SER VAL GLU ASP GLU MSE ASP VAL SEQRES 3 A 355 MSE THR PHE ASP LEU VAL SER ARG LEU SER SER ALA THR SEQRES 4 A 355 SER SER GLN VAL ASP VAL SER TYR SER VAL ALA GLU PRO SEQRES 5 A 355 SER VAL VAL ASP GLU TYR ASN ALA LYS TYR GLY THR ASN SEQRES 6 A 355 TYR GLU MSE LEU ASP VAL SER GLN VAL LYS LEU SER SER SEQRES 7 A 355 THR THR SER SER ILE SER SER GLY LYS LEU TYR ALA ASP SEQRES 8 A 355 ASN ILE GLU VAL GLU LEU SER GLY LEU GLU ALA LEU LYS SEQRES 9 A 355 ALA GLY ASN SER TYR VAL LEU PRO MSE ARG VAL HIS SER SEQRES 10 A 355 SER SER VAL SER THR LEU SER GLY THR ASN ILE ALA TYR SEQRES 11 A 355 PHE PHE PHE SER LYS PRO LEU LYS ILE THR LYS ALA GLY SEQRES 12 A 355 ASN PHE SER ASN HIS TYR ILE SER VAL LYS PHE PRO VAL SEQRES 13 A 355 GLY THR PHE PHE SER SER PHE THR TYR GLU ALA LEU ILE SEQRES 14 A 355 ASN VAL ASP TYR PHE LEU ASP ASN ASN THR ILE MSE GLY SEQRES 15 A 355 THR GLU GLY VAL MSE ILE LEU ARG ILE GLY ASP ALA GLY SEQRES 16 A 355 GLY GLY ILE THR PRO LYS ASP TYR LEU GLU VAL ALA GLY SEQRES 17 A 355 GLY GLN ASN TYR ARG VAL THR LYS PRO LEU LEU THR ASN SEQRES 18 A 355 ARG TRP TYR HIS VAL ALA LEU THR TYR ASP GLN PRO THR SEQRES 19 A 355 GLY LYS THR GLY ILE TYR VAL ASN GLY GLU LYS TRP ALA SEQRES 20 A 355 GLY SER ASP TRP GLY ILE ASP GLY PHE ASP PRO ASN SER SEQRES 21 A 355 ASP MSE GLY PHE TYR ILE GLY ARG ILE TYR GLY PHE LYS SEQRES 22 A 355 TRP GLY GLU ARG PRO PHE HIS GLY LYS MSE SER GLU VAL SEQRES 23 A 355 ARG VAL TRP SER VAL ALA ARG THR GLU ASN GLN LEU LYS SEQRES 24 A 355 GLN ASN MSE LEU GLY VAL ASP PRO ALA SER GLU GLY LEU SEQRES 25 A 355 ALA LEU TYR TYR LYS LEU ASP GLY SER GLU THR GLN GLU SEQRES 26 A 355 GLY GLY VAL ILE LYS ASP ALA THR GLY ARG ILE ASN GLY SEQRES 27 A 355 THR THR ASN GLY ILE THR ILE LYS THR LEU ASP ALA PRO SEQRES 28 A 355 ILE ALA ILE ASN MODRES 4DQA MSE A 49 MET SELENOMETHIONINE MODRES 4DQA MSE A 52 MET SELENOMETHIONINE MODRES 4DQA MSE A 93 MET SELENOMETHIONINE MODRES 4DQA MSE A 138 MET SELENOMETHIONINE MODRES 4DQA MSE A 206 MET SELENOMETHIONINE MODRES 4DQA MSE A 212 MET SELENOMETHIONINE MODRES 4DQA MSE A 287 MET SELENOMETHIONINE MODRES 4DQA MSE A 308 MET SELENOMETHIONINE MODRES 4DQA MSE A 327 MET SELENOMETHIONINE HET MSE A 49 17 HET MSE A 52 17 HET MSE A 93 17 HET MSE A 138 17 HET MSE A 206 31 HET MSE A 212 17 HET MSE A 287 17 HET MSE A 308 17 HET MSE A 327 17 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 HOH *438(H2 O) HELIX 1 1 GLU A 76 GLY A 88 1 13 HELIX 2 2 ASP A 95 SER A 97 5 3 HELIX 3 3 ASP A 218 GLY A 222 5 5 HELIX 4 4 THR A 319 ASN A 326 1 8 SHEET 1 A 3 ARG A 59 LEU A 60 0 SHEET 2 A 3 LYS A 33 TYR A 35 -1 N TYR A 35 O ARG A 59 SHEET 3 A 3 SER A 146 THR A 147 1 O SER A 146 N VAL A 34 SHEET 1 B 4 GLU A 40 SER A 44 0 SHEET 2 B 4 ILE A 153 LYS A 160 1 O PHE A 157 N TYR A 41 SHEET 3 B 4 ASN A 132 SER A 142 -1 N TYR A 134 O PHE A 158 SHEET 4 B 4 GLU A 92 MSE A 93 1 N GLU A 92 O SER A 133 SHEET 1 C 5 GLU A 40 SER A 44 0 SHEET 2 C 5 ILE A 153 LYS A 160 1 O PHE A 157 N TYR A 41 SHEET 3 C 5 ASN A 132 SER A 142 -1 N TYR A 134 O PHE A 158 SHEET 4 C 5 VAL A 68 VAL A 74 -1 N SER A 73 O ARG A 139 SHEET 5 C 5 THR A 105 ILE A 108 -1 O ILE A 108 N VAL A 68 SHEET 1 D 3 MSE A 52 LEU A 56 0 SHEET 2 D 3 ILE A 118 LEU A 122 -1 O VAL A 120 N PHE A 54 SHEET 3 D 3 VAL A 99 LEU A 101 -1 N LYS A 100 O GLU A 121 SHEET 1 E 6 GLU A 269 ASP A 275 0 SHEET 2 E 6 LYS A 261 VAL A 266 -1 N ILE A 264 O TRP A 271 SHEET 3 E 6 TRP A 248 ASP A 256 -1 N ASP A 256 O LYS A 261 SHEET 4 E 6 PHE A 188 VAL A 196 -1 N ALA A 192 O VAL A 251 SHEET 5 E 6 HIS A 305 TRP A 314 -1 O SER A 309 N LEU A 193 SHEET 6 E 6 LEU A 337 TYR A 341 -1 O TYR A 341 N VAL A 311 SHEET 1 F 7 GLU A 269 ASP A 275 0 SHEET 2 F 7 LYS A 261 VAL A 266 -1 N ILE A 264 O TRP A 271 SHEET 3 F 7 TRP A 248 ASP A 256 -1 N ASP A 256 O LYS A 261 SHEET 4 F 7 PHE A 188 VAL A 196 -1 N ALA A 192 O VAL A 251 SHEET 5 F 7 HIS A 305 TRP A 314 -1 O SER A 309 N LEU A 193 SHEET 6 F 7 LYS A 166 SER A 171 -1 N PHE A 170 O GLY A 306 SHEET 7 F 7 ILE A 370 THR A 372 -1 O LYS A 371 N ALA A 167 SHEET 1 G 9 TYR A 237 ARG A 238 0 SHEET 2 G 9 LEU A 229 GLY A 233 -1 N VAL A 231 O TYR A 237 SHEET 3 G 9 MSE A 212 ILE A 216 -1 N ILE A 213 O ALA A 232 SHEET 4 G 9 ASN A 203 THR A 208 -1 N MSE A 206 O LEU A 214 SHEET 5 G 9 PHE A 289 ILE A 291 -1 O TYR A 290 N GLY A 207 SHEET 6 G 9 ILE A 175 VAL A 177 -1 N VAL A 177 O PHE A 289 SHEET 7 G 9 ASN A 362 THR A 365 -1 O THR A 364 N SER A 176 SHEET 8 G 9 VAL A 353 LYS A 355 -1 N ILE A 354 O GLY A 363 SHEET 9 G 9 GLN A 349 GLU A 350 -1 N GLU A 350 O VAL A 353 LINK C GLU A 48 N MSE A 49 1555 1555 1.33 LINK C MSE A 49 N ASP A 50 1555 1555 1.33 LINK C VAL A 51 N MSE A 52 1555 1555 1.33 LINK C MSE A 52 N THR A 53 1555 1555 1.33 LINK C GLU A 92 N MSE A 93 1555 1555 1.32 LINK C MSE A 93 N LEU A 94 1555 1555 1.32 LINK C PRO A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N ARG A 139 1555 1555 1.32 LINK C ILE A 205 N MSE A 206 1555 1555 1.32 LINK C MSE A 206 N GLY A 207 1555 1555 1.33 LINK C VAL A 211 N MSE A 212 1555 1555 1.33 LINK C MSE A 212 N ILE A 213 1555 1555 1.33 LINK C ASP A 286 N MSE A 287 1555 1555 1.33 LINK C MSE A 287 N GLY A 288 1555 1555 1.33 LINK C LYS A 307 N MSE A 308 1555 1555 1.33 LINK C MSE A 308 N SER A 309 1555 1555 1.32 LINK C ASN A 326 N MSE A 327 1555 1555 1.34 LINK C MSE A 327 N LEU A 328 1555 1555 1.34 CRYST1 94.131 94.131 156.273 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010623 0.006133 0.000000 0.00000 SCALE2 0.000000 0.012267 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006399 0.00000