HEADER OXIDOREDUCTASE 16-FEB-12 4DR0 TITLE CRYSTAL STRUCTURE OF BACILLUS SUBTILIS DIMANGANESE(II) NRDF COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT; COMPND 5 EC: 1.17.4.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: BSU17390, NRDF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS RIBONUCLEOTIDE REDUCTASE, MANGANESE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.BOAL,J.A.COTRUVO JR.,J.STUBBE,A.C.ROSENZWEIG REVDAT 4 28-FEB-24 4DR0 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4DR0 1 REMARK REVDAT 2 23-MAY-12 4DR0 1 JRNL REVDAT 1 11-APR-12 4DR0 0 JRNL AUTH A.K.BOAL,J.A.COTRUVO,J.STUBBE,A.C.ROSENZWEIG JRNL TITL THE DIMANGANESE(II) SITE OF BACILLUS SUBTILIS CLASS IB JRNL TITL 2 RIBONUCLEOTIDE REDUCTASE. JRNL REF BIOCHEMISTRY V. 51 3861 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22443445 JRNL DOI 10.1021/BI201925T REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 49350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2471 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2829 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4771 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.76000 REMARK 3 B22 (A**2) : -1.75000 REMARK 3 B33 (A**2) : 3.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.716 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4905 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6635 ; 1.089 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 585 ; 4.699 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 255 ;41.007 ;25.843 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 881 ;13.865 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.234 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 708 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3734 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2898 ; 0.537 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4660 ; 1.067 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2007 ; 1.823 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1974 ; 3.040 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): -27.9178 4.4648 -18.3114 REMARK 3 T TENSOR REMARK 3 T11: 0.0172 T22: 0.0108 REMARK 3 T33: 0.0257 T12: -0.0051 REMARK 3 T13: -0.0034 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.2967 L22: 0.4442 REMARK 3 L33: 0.2193 L12: 0.0254 REMARK 3 L13: -0.0345 L23: 0.1472 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: -0.0402 S13: -0.0219 REMARK 3 S21: 0.0107 S22: -0.0132 S23: -0.0390 REMARK 3 S31: 0.0101 S32: 0.0135 S33: 0.0093 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 293 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1835 25.5109 -32.6242 REMARK 3 T TENSOR REMARK 3 T11: 0.0255 T22: 0.0030 REMARK 3 T33: 0.0304 T12: 0.0008 REMARK 3 T13: -0.0008 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.6343 L22: 0.2862 REMARK 3 L33: 0.1219 L12: 0.2876 REMARK 3 L13: 0.0524 L23: -0.0154 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: -0.0145 S13: -0.0052 REMARK 3 S21: -0.0013 S22: -0.0160 S23: -0.0235 REMARK 3 S31: -0.0008 S32: -0.0107 S33: 0.0226 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070674. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.078 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49535 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, LITHIUM SULFATE, PH 6.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 55.26250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.45600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.26250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.45600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 ASN A 291 REMARK 465 THR A 292 REMARK 465 LYS A 293 REMARK 465 THR A 294 REMARK 465 LYS A 295 REMARK 465 SER A 296 REMARK 465 HIS A 297 REMARK 465 ASP A 298 REMARK 465 PHE A 299 REMARK 465 PHE A 300 REMARK 465 SER A 301 REMARK 465 MET A 302 REMARK 465 LYS A 303 REMARK 465 GLY A 304 REMARK 465 ASN A 305 REMARK 465 GLY A 306 REMARK 465 TYR A 307 REMARK 465 LYS A 308 REMARK 465 LYS A 309 REMARK 465 ALA A 310 REMARK 465 THR A 311 REMARK 465 VAL A 312 REMARK 465 GLU A 313 REMARK 465 PRO A 314 REMARK 465 LEU A 315 REMARK 465 LYS A 316 REMARK 465 ASP A 317 REMARK 465 ASP A 318 REMARK 465 ASP A 319 REMARK 465 PHE A 320 REMARK 465 TYR A 321 REMARK 465 PHE A 322 REMARK 465 GLU A 323 REMARK 465 ASP A 324 REMARK 465 GLU A 325 REMARK 465 LYS A 326 REMARK 465 GLU A 327 REMARK 465 GLN A 328 REMARK 465 ILE A 329 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 294 REMARK 465 LYS B 295 REMARK 465 SER B 296 REMARK 465 HIS B 297 REMARK 465 ASP B 298 REMARK 465 PHE B 299 REMARK 465 PHE B 300 REMARK 465 SER B 301 REMARK 465 MET B 302 REMARK 465 LYS B 303 REMARK 465 GLY B 304 REMARK 465 ASN B 305 REMARK 465 GLY B 306 REMARK 465 TYR B 307 REMARK 465 LYS B 308 REMARK 465 LYS B 309 REMARK 465 ALA B 310 REMARK 465 THR B 311 REMARK 465 VAL B 312 REMARK 465 GLU B 313 REMARK 465 PRO B 314 REMARK 465 LEU B 315 REMARK 465 LYS B 316 REMARK 465 ASP B 317 REMARK 465 ASP B 318 REMARK 465 ASP B 319 REMARK 465 PHE B 320 REMARK 465 TYR B 321 REMARK 465 PHE B 322 REMARK 465 GLU B 323 REMARK 465 ASP B 324 REMARK 465 GLU B 325 REMARK 465 LYS B 326 REMARK 465 GLU B 327 REMARK 465 GLN B 328 REMARK 465 ILE B 329 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 86 OE1 GLU B 211 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 8 88.23 -12.63 REMARK 500 ASN A 9 -160.39 -110.55 REMARK 500 THR A 72 -59.06 -128.05 REMARK 500 ASP A 148 15.68 58.06 REMARK 500 PHE A 166 -60.81 -125.64 REMARK 500 THR B 72 -58.47 -128.18 REMARK 500 PHE B 166 -61.16 -144.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 66 OD1 REMARK 620 2 GLU A 97 OE1 89.6 REMARK 620 3 HIS A 101 ND1 120.6 90.1 REMARK 620 4 GLU A 198 OE2 117.3 137.9 101.2 REMARK 620 5 GLU A 198 OE1 138.4 85.1 100.7 53.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 97 OE2 REMARK 620 2 GLU A 164 OE2 87.2 REMARK 620 3 GLU A 164 OE1 141.6 64.8 REMARK 620 4 GLU A 198 OE1 120.1 142.1 78.3 REMARK 620 5 HIS A 201 ND1 97.1 103.9 114.2 98.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 66 OD2 REMARK 620 2 ASP B 66 OD1 58.6 REMARK 620 3 GLU B 97 OE1 119.5 93.4 REMARK 620 4 HIS B 101 ND1 107.0 165.7 93.8 REMARK 620 5 GLU B 198 OE2 111.3 90.2 122.1 96.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 97 OE2 REMARK 620 2 GLU B 164 OE1 153.3 REMARK 620 3 GLU B 164 OE2 99.6 55.6 REMARK 620 4 GLU B 198 OE1 121.7 81.3 136.7 REMARK 620 5 HIS B 201 ND1 91.4 103.0 102.6 89.6 REMARK 620 6 HOH B 501 O 81.5 85.1 82.7 90.7 171.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 DBREF 4DR0 A 1 329 UNP P50621 RIR2_BACSU 1 329 DBREF 4DR0 B 1 329 UNP P50621 RIR2_BACSU 1 329 SEQADV 4DR0 MET A -20 UNP P50621 EXPRESSION TAG SEQADV 4DR0 GLY A -19 UNP P50621 EXPRESSION TAG SEQADV 4DR0 SER A -18 UNP P50621 EXPRESSION TAG SEQADV 4DR0 SER A -17 UNP P50621 EXPRESSION TAG SEQADV 4DR0 HIS A -16 UNP P50621 EXPRESSION TAG SEQADV 4DR0 HIS A -15 UNP P50621 EXPRESSION TAG SEQADV 4DR0 HIS A -14 UNP P50621 EXPRESSION TAG SEQADV 4DR0 HIS A -13 UNP P50621 EXPRESSION TAG SEQADV 4DR0 HIS A -12 UNP P50621 EXPRESSION TAG SEQADV 4DR0 HIS A -11 UNP P50621 EXPRESSION TAG SEQADV 4DR0 SER A -10 UNP P50621 EXPRESSION TAG SEQADV 4DR0 SER A -9 UNP P50621 EXPRESSION TAG SEQADV 4DR0 GLY A -8 UNP P50621 EXPRESSION TAG SEQADV 4DR0 LEU A -7 UNP P50621 EXPRESSION TAG SEQADV 4DR0 VAL A -6 UNP P50621 EXPRESSION TAG SEQADV 4DR0 PRO A -5 UNP P50621 EXPRESSION TAG SEQADV 4DR0 ARG A -4 UNP P50621 EXPRESSION TAG SEQADV 4DR0 GLY A -3 UNP P50621 EXPRESSION TAG SEQADV 4DR0 SER A -2 UNP P50621 EXPRESSION TAG SEQADV 4DR0 HIS A -1 UNP P50621 EXPRESSION TAG SEQADV 4DR0 MET A 0 UNP P50621 EXPRESSION TAG SEQADV 4DR0 MET B -20 UNP P50621 EXPRESSION TAG SEQADV 4DR0 GLY B -19 UNP P50621 EXPRESSION TAG SEQADV 4DR0 SER B -18 UNP P50621 EXPRESSION TAG SEQADV 4DR0 SER B -17 UNP P50621 EXPRESSION TAG SEQADV 4DR0 HIS B -16 UNP P50621 EXPRESSION TAG SEQADV 4DR0 HIS B -15 UNP P50621 EXPRESSION TAG SEQADV 4DR0 HIS B -14 UNP P50621 EXPRESSION TAG SEQADV 4DR0 HIS B -13 UNP P50621 EXPRESSION TAG SEQADV 4DR0 HIS B -12 UNP P50621 EXPRESSION TAG SEQADV 4DR0 HIS B -11 UNP P50621 EXPRESSION TAG SEQADV 4DR0 SER B -10 UNP P50621 EXPRESSION TAG SEQADV 4DR0 SER B -9 UNP P50621 EXPRESSION TAG SEQADV 4DR0 GLY B -8 UNP P50621 EXPRESSION TAG SEQADV 4DR0 LEU B -7 UNP P50621 EXPRESSION TAG SEQADV 4DR0 VAL B -6 UNP P50621 EXPRESSION TAG SEQADV 4DR0 PRO B -5 UNP P50621 EXPRESSION TAG SEQADV 4DR0 ARG B -4 UNP P50621 EXPRESSION TAG SEQADV 4DR0 GLY B -3 UNP P50621 EXPRESSION TAG SEQADV 4DR0 SER B -2 UNP P50621 EXPRESSION TAG SEQADV 4DR0 HIS B -1 UNP P50621 EXPRESSION TAG SEQADV 4DR0 MET B 0 UNP P50621 EXPRESSION TAG SEQRES 1 A 350 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 350 LEU VAL PRO ARG GLY SER HIS MET MET THR LYS ILE TYR SEQRES 3 A 350 ASP ALA ALA ASN TRP SER LYS HIS GLU ASP ASP PHE THR SEQRES 4 A 350 GLN MET PHE TYR ASN GLN ASN VAL LYS GLN PHE TRP LEU SEQRES 5 A 350 PRO GLU GLU ILE ALA LEU ASN GLY ASP LEU LEU THR TRP SEQRES 6 A 350 LYS TYR LEU GLY LYS ASN GLU GLN ASP THR TYR MET LYS SEQRES 7 A 350 VAL LEU ALA GLY LEU THR LEU LEU ASP THR GLU GLN GLY SEQRES 8 A 350 ASN THR GLY MET PRO ILE VAL ALA GLU HIS VAL ASP GLY SEQRES 9 A 350 HIS GLN ARG LYS ALA VAL LEU ASN PHE MET ALA MET MET SEQRES 10 A 350 GLU ASN ALA VAL HIS ALA LYS SER TYR SER ASN ILE PHE SEQRES 11 A 350 MET THR LEU ALA PRO THR GLU THR ILE ASN GLU VAL PHE SEQRES 12 A 350 GLU TRP VAL LYS GLN ASN LYS TYR LEU GLN LYS LYS ALA SEQRES 13 A 350 GLN MET ILE VAL GLY LEU TYR LYS ALA ILE GLN LYS ASP SEQRES 14 A 350 ASP GLU ILE SER LEU PHE LYS ALA MET VAL ALA SER VAL SEQRES 15 A 350 TYR LEU GLU SER PHE LEU PHE TYR SER GLY PHE TYR TYR SEQRES 16 A 350 PRO LEU TYR PHE TYR GLY GLN GLY LYS LEU MET GLN SER SEQRES 17 A 350 GLY GLU ILE ILE ASN LEU ILE LEU ARG ASP GLU ALA ILE SEQRES 18 A 350 HIS GLY VAL TYR VAL GLY LEU LEU ALA GLN GLU ILE TYR SEQRES 19 A 350 ASN LYS GLN THR GLU GLU LYS LYS ALA GLU LEU ARG GLU SEQRES 20 A 350 PHE ALA ILE ASP LEU LEU ASN GLN LEU TYR GLU ASN GLU SEQRES 21 A 350 LEU GLU TYR THR GLU ASP LEU TYR ASP GLN VAL GLY LEU SEQRES 22 A 350 SER HIS ASP VAL LYS LYS PHE ILE ARG TYR ASN ALA ASN SEQRES 23 A 350 LYS ALA LEU MET ASN LEU GLY PHE ASP PRO TYR PHE GLU SEQRES 24 A 350 GLU GLU ASP ILE ASN PRO ILE VAL LEU ASN GLY LEU ASN SEQRES 25 A 350 THR LYS THR LYS SER HIS ASP PHE PHE SER MET LYS GLY SEQRES 26 A 350 ASN GLY TYR LYS LYS ALA THR VAL GLU PRO LEU LYS ASP SEQRES 27 A 350 ASP ASP PHE TYR PHE GLU ASP GLU LYS GLU GLN ILE SEQRES 1 B 350 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 350 LEU VAL PRO ARG GLY SER HIS MET MET THR LYS ILE TYR SEQRES 3 B 350 ASP ALA ALA ASN TRP SER LYS HIS GLU ASP ASP PHE THR SEQRES 4 B 350 GLN MET PHE TYR ASN GLN ASN VAL LYS GLN PHE TRP LEU SEQRES 5 B 350 PRO GLU GLU ILE ALA LEU ASN GLY ASP LEU LEU THR TRP SEQRES 6 B 350 LYS TYR LEU GLY LYS ASN GLU GLN ASP THR TYR MET LYS SEQRES 7 B 350 VAL LEU ALA GLY LEU THR LEU LEU ASP THR GLU GLN GLY SEQRES 8 B 350 ASN THR GLY MET PRO ILE VAL ALA GLU HIS VAL ASP GLY SEQRES 9 B 350 HIS GLN ARG LYS ALA VAL LEU ASN PHE MET ALA MET MET SEQRES 10 B 350 GLU ASN ALA VAL HIS ALA LYS SER TYR SER ASN ILE PHE SEQRES 11 B 350 MET THR LEU ALA PRO THR GLU THR ILE ASN GLU VAL PHE SEQRES 12 B 350 GLU TRP VAL LYS GLN ASN LYS TYR LEU GLN LYS LYS ALA SEQRES 13 B 350 GLN MET ILE VAL GLY LEU TYR LYS ALA ILE GLN LYS ASP SEQRES 14 B 350 ASP GLU ILE SER LEU PHE LYS ALA MET VAL ALA SER VAL SEQRES 15 B 350 TYR LEU GLU SER PHE LEU PHE TYR SER GLY PHE TYR TYR SEQRES 16 B 350 PRO LEU TYR PHE TYR GLY GLN GLY LYS LEU MET GLN SER SEQRES 17 B 350 GLY GLU ILE ILE ASN LEU ILE LEU ARG ASP GLU ALA ILE SEQRES 18 B 350 HIS GLY VAL TYR VAL GLY LEU LEU ALA GLN GLU ILE TYR SEQRES 19 B 350 ASN LYS GLN THR GLU GLU LYS LYS ALA GLU LEU ARG GLU SEQRES 20 B 350 PHE ALA ILE ASP LEU LEU ASN GLN LEU TYR GLU ASN GLU SEQRES 21 B 350 LEU GLU TYR THR GLU ASP LEU TYR ASP GLN VAL GLY LEU SEQRES 22 B 350 SER HIS ASP VAL LYS LYS PHE ILE ARG TYR ASN ALA ASN SEQRES 23 B 350 LYS ALA LEU MET ASN LEU GLY PHE ASP PRO TYR PHE GLU SEQRES 24 B 350 GLU GLU ASP ILE ASN PRO ILE VAL LEU ASN GLY LEU ASN SEQRES 25 B 350 THR LYS THR LYS SER HIS ASP PHE PHE SER MET LYS GLY SEQRES 26 B 350 ASN GLY TYR LYS LYS ALA THR VAL GLU PRO LEU LYS ASP SEQRES 27 B 350 ASP ASP PHE TYR PHE GLU ASP GLU LYS GLU GLN ILE HET MN A 401 1 HET MN A 402 1 HET SO4 A 403 5 HET MN B 401 1 HET MN B 402 1 HET SO4 B 403 5 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION FORMUL 3 MN 4(MN 2+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 9 HOH *294(H2 O) HELIX 1 1 PHE A 17 GLN A 28 1 12 HELIX 2 2 LEU A 31 ILE A 35 5 5 HELIX 3 3 LEU A 37 GLY A 39 5 3 HELIX 4 4 ASP A 40 TYR A 46 1 7 HELIX 5 5 GLY A 48 THR A 72 1 25 HELIX 6 6 THR A 72 VAL A 81 1 10 HELIX 7 7 GLY A 83 VAL A 100 1 18 HELIX 8 8 VAL A 100 ALA A 113 1 14 HELIX 9 9 PRO A 114 ASN A 128 1 15 HELIX 10 10 ASN A 128 ALA A 144 1 17 HELIX 11 11 ASP A 149 PHE A 166 1 18 HELIX 12 12 PHE A 168 GLY A 180 1 13 HELIX 13 13 LEU A 184 ASN A 214 1 31 HELIX 14 14 THR A 217 ASP A 248 1 32 HELIX 15 15 GLN A 249 GLY A 251 5 3 HELIX 16 16 LEU A 252 LEU A 271 1 20 HELIX 17 17 ASN A 283 GLY A 289 1 7 HELIX 18 18 PHE B 17 GLN B 28 1 12 HELIX 19 19 LEU B 31 ILE B 35 5 5 HELIX 20 20 LEU B 37 GLY B 39 5 3 HELIX 21 21 ASP B 40 LYS B 45 1 6 HELIX 22 22 GLY B 48 THR B 72 1 25 HELIX 23 23 THR B 72 VAL B 81 1 10 HELIX 24 24 GLY B 83 VAL B 100 1 18 HELIX 25 25 VAL B 100 ALA B 113 1 14 HELIX 26 26 PRO B 114 ASN B 128 1 15 HELIX 27 27 ASN B 128 ALA B 144 1 17 HELIX 28 28 ASP B 149 PHE B 166 1 18 HELIX 29 29 PHE B 168 GLY B 180 1 13 HELIX 30 30 LEU B 184 ASN B 214 1 31 HELIX 31 31 THR B 217 ASP B 248 1 32 HELIX 32 32 GLN B 249 GLY B 251 5 3 HELIX 33 33 LEU B 252 LEU B 271 1 20 HELIX 34 34 ASN B 283 ASN B 291 1 9 LINK OD1 ASP A 66 MN MN A 402 1555 1555 2.03 LINK OE2 GLU A 97 MN MN A 401 1555 1555 1.96 LINK OE1 GLU A 97 MN MN A 402 1555 1555 2.11 LINK ND1 HIS A 101 MN MN A 402 1555 1555 2.18 LINK OE2 GLU A 164 MN MN A 401 1555 1555 1.97 LINK OE1 GLU A 164 MN MN A 401 1555 1555 2.13 LINK OE1 GLU A 198 MN MN A 401 1555 1555 2.17 LINK OE2 GLU A 198 MN MN A 402 1555 1555 2.10 LINK OE1 GLU A 198 MN MN A 402 1555 1555 2.71 LINK ND1 HIS A 201 MN MN A 401 1555 1555 2.41 LINK OD2 ASP B 66 MN MN B 402 1555 1555 2.16 LINK OD1 ASP B 66 MN MN B 402 1555 1555 2.33 LINK OE2 GLU B 97 MN MN B 401 1555 1555 1.91 LINK OE1 GLU B 97 MN MN B 402 1555 1555 1.99 LINK ND1 HIS B 101 MN MN B 402 1555 1555 2.15 LINK OE1 GLU B 164 MN MN B 401 1555 1555 2.30 LINK OE2 GLU B 164 MN MN B 401 1555 1555 2.32 LINK OE1 GLU B 198 MN MN B 401 1555 1555 2.08 LINK OE2 GLU B 198 MN MN B 402 1555 1555 2.09 LINK ND1 HIS B 201 MN MN B 401 1555 1555 2.33 LINK MN MN B 401 O HOH B 501 1555 1555 2.37 SITE 1 AC1 4 GLU A 97 GLU A 164 GLU A 198 HIS A 201 SITE 1 AC2 4 ASP A 66 GLU A 97 HIS A 101 GLU A 198 SITE 1 AC3 4 HIS A 254 LYS A 257 ARG A 261 HOH A 556 SITE 1 AC4 5 GLU B 97 GLU B 164 GLU B 198 HIS B 201 SITE 2 AC4 5 HOH B 501 SITE 1 AC5 4 ASP B 66 GLU B 97 HIS B 101 GLU B 198 SITE 1 AC6 7 LYS A 143 GLY B 48 LYS B 49 ASN B 50 SITE 2 AC6 7 GLU B 51 HOH B 588 HOH B 605 CRYST1 110.525 112.912 51.286 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009048 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008856 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019499 0.00000