data_4DRE # _entry.id 4DRE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4DRE RCSB RCSB070687 WWPDB D_1000070687 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4DQU _pdbx_database_related.details 'Mycobacterium tuberculosis InhA-D148G mutant in complex with NADH' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4DRE _pdbx_database_status.recvd_initial_deposition_date 2012-02-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pojer, F.' 1 'Hartkoorn, R.C.' 2 'Boy, S.' 3 'Cole, S.T.' 4 # _citation.id primary _citation.title ;Towards a new tuberculosis drug: pyridomycin - nature's isoniazid. ; _citation.journal_abbrev 'EMBO Mol Med' _citation.journal_volume 4 _citation.page_first 1032 _citation.page_last 1042 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1757-4676 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22987724 _citation.pdbx_database_id_DOI 10.1002/emmm.201201689 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hartkoorn, R.C.' 1 primary 'Sala, C.' 2 primary 'Neres, J.' 3 primary 'Pojer, F.' 4 primary 'Magnet, S.' 5 primary 'Mukherjee, R.' 6 primary 'Uplekar, S.' 7 primary 'Boy-Rottger, S.' 8 primary 'Altmann, K.H.' 9 primary 'Cole, S.T.' 10 # _cell.entry_id 4DRE _cell.length_a 97.649 _cell.length_b 97.649 _cell.length_c 139.561 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4DRE _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Enoyl-[acyl-carrier-protein] reductase [NADH]' 28554.781 1 1.3.1.9 ? ? ? 2 non-polymer syn '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 665.441 1 ? ? ? ? 3 water nat water 18.015 38 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NADH-dependent enoyl-ACP reductase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTGLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTE AIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNW MTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAK TVCALLSDWLPATTGDIIYADGGAHTQLL ; _entity_poly.pdbx_seq_one_letter_code_can ;MTGLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTE AIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNW MTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAK TVCALLSDWLPATTGDIIYADGGAHTQLL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 GLY n 1 4 LEU n 1 5 LEU n 1 6 ASP n 1 7 GLY n 1 8 LYS n 1 9 ARG n 1 10 ILE n 1 11 LEU n 1 12 VAL n 1 13 SER n 1 14 GLY n 1 15 ILE n 1 16 ILE n 1 17 THR n 1 18 ASP n 1 19 SER n 1 20 SER n 1 21 ILE n 1 22 ALA n 1 23 PHE n 1 24 HIS n 1 25 ILE n 1 26 ALA n 1 27 ARG n 1 28 VAL n 1 29 ALA n 1 30 GLN n 1 31 GLU n 1 32 GLN n 1 33 GLY n 1 34 ALA n 1 35 GLN n 1 36 LEU n 1 37 VAL n 1 38 LEU n 1 39 THR n 1 40 GLY n 1 41 PHE n 1 42 ASP n 1 43 ARG n 1 44 LEU n 1 45 ARG n 1 46 LEU n 1 47 ILE n 1 48 GLN n 1 49 ARG n 1 50 ILE n 1 51 THR n 1 52 ASP n 1 53 ARG n 1 54 LEU n 1 55 PRO n 1 56 ALA n 1 57 LYS n 1 58 ALA n 1 59 PRO n 1 60 LEU n 1 61 LEU n 1 62 GLU n 1 63 LEU n 1 64 ASP n 1 65 VAL n 1 66 GLN n 1 67 ASN n 1 68 GLU n 1 69 GLU n 1 70 HIS n 1 71 LEU n 1 72 ALA n 1 73 SER n 1 74 LEU n 1 75 ALA n 1 76 GLY n 1 77 ARG n 1 78 VAL n 1 79 THR n 1 80 GLU n 1 81 ALA n 1 82 ILE n 1 83 GLY n 1 84 ALA n 1 85 GLY n 1 86 ASN n 1 87 LYS n 1 88 LEU n 1 89 ASP n 1 90 GLY n 1 91 VAL n 1 92 VAL n 1 93 HIS n 1 94 SER n 1 95 ILE n 1 96 GLY n 1 97 PHE n 1 98 MET n 1 99 PRO n 1 100 GLN n 1 101 THR n 1 102 GLY n 1 103 MET n 1 104 GLY n 1 105 ILE n 1 106 ASN n 1 107 PRO n 1 108 PHE n 1 109 PHE n 1 110 ASP n 1 111 ALA n 1 112 PRO n 1 113 TYR n 1 114 ALA n 1 115 ASP n 1 116 VAL n 1 117 SER n 1 118 LYS n 1 119 GLY n 1 120 ILE n 1 121 HIS n 1 122 ILE n 1 123 SER n 1 124 ALA n 1 125 TYR n 1 126 SER n 1 127 TYR n 1 128 ALA n 1 129 SER n 1 130 MET n 1 131 ALA n 1 132 LYS n 1 133 ALA n 1 134 LEU n 1 135 LEU n 1 136 PRO n 1 137 ILE n 1 138 MET n 1 139 ASN n 1 140 PRO n 1 141 GLY n 1 142 GLY n 1 143 SER n 1 144 ILE n 1 145 VAL n 1 146 GLY n 1 147 MET n 1 148 ASP n 1 149 PHE n 1 150 ASP n 1 151 PRO n 1 152 SER n 1 153 ARG n 1 154 ALA n 1 155 MET n 1 156 PRO n 1 157 ALA n 1 158 TYR n 1 159 ASN n 1 160 TRP n 1 161 MET n 1 162 THR n 1 163 VAL n 1 164 ALA n 1 165 LYS n 1 166 SER n 1 167 ALA n 1 168 LEU n 1 169 GLU n 1 170 SER n 1 171 VAL n 1 172 ASN n 1 173 ARG n 1 174 PHE n 1 175 VAL n 1 176 ALA n 1 177 ARG n 1 178 GLU n 1 179 ALA n 1 180 GLY n 1 181 LYS n 1 182 TYR n 1 183 GLY n 1 184 VAL n 1 185 ARG n 1 186 SER n 1 187 ASN n 1 188 LEU n 1 189 VAL n 1 190 ALA n 1 191 ALA n 1 192 GLY n 1 193 PRO n 1 194 ILE n 1 195 ARG n 1 196 THR n 1 197 LEU n 1 198 ALA n 1 199 MET n 1 200 SER n 1 201 ALA n 1 202 ILE n 1 203 VAL n 1 204 GLY n 1 205 GLY n 1 206 ALA n 1 207 LEU n 1 208 GLY n 1 209 GLU n 1 210 GLU n 1 211 ALA n 1 212 GLY n 1 213 ALA n 1 214 GLN n 1 215 ILE n 1 216 GLN n 1 217 LEU n 1 218 LEU n 1 219 GLU n 1 220 GLU n 1 221 GLY n 1 222 TRP n 1 223 ASP n 1 224 GLN n 1 225 ARG n 1 226 ALA n 1 227 PRO n 1 228 ILE n 1 229 GLY n 1 230 TRP n 1 231 ASN n 1 232 MET n 1 233 LYS n 1 234 ASP n 1 235 ALA n 1 236 THR n 1 237 PRO n 1 238 VAL n 1 239 ALA n 1 240 LYS n 1 241 THR n 1 242 VAL n 1 243 CYS n 1 244 ALA n 1 245 LEU n 1 246 LEU n 1 247 SER n 1 248 ASP n 1 249 TRP n 1 250 LEU n 1 251 PRO n 1 252 ALA n 1 253 THR n 1 254 THR n 1 255 GLY n 1 256 ASP n 1 257 ILE n 1 258 ILE n 1 259 TYR n 1 260 ALA n 1 261 ASP n 1 262 GLY n 1 263 GLY n 1 264 ALA n 1 265 HIS n 1 266 THR n 1 267 GLN n 1 268 LEU n 1 269 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'inhA, MT1531, MTCY277.05, Rv1484' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain H37Rv _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1773 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code INHA_MYCTU _struct_ref.pdbx_db_accession P0A5Y6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTGLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTE AIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNW MTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAK TVCALLSDWLPATTGDIIYADGGAHTQLL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4DRE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 269 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0A5Y6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 269 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 269 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAI non-polymer . '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' NADH 'C21 H29 N7 O14 P2' 665.441 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4DRE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.36 _exptl_crystal.density_percent_sol 63.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8 _exptl_crystal_grow.pdbx_details '10% (v/v) MPD and 0.1 M TRIS, pH 8, VAPOR DIFFUSION, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-12-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 # _reflns.entry_id 4DRE _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.4 _reflns.number_obs ? _reflns.number_all 29145 _reflns.percent_possible_obs 99 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4DRE _refine.ls_number_reflns_obs 15218 _refine.ls_number_reflns_all 14464 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50 _refine.ls_d_res_high 2.4 _refine.ls_percent_reflns_obs 99.79 _refine.ls_R_factor_obs 0.19519 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19245 _refine.ls_R_factor_R_free 0.24933 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 801 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.946 _refine.correlation_coeff_Fo_to_Fc_free 0.911 _refine.B_iso_mean 32.681 _refine.aniso_B[1][1] 1.51 _refine.aniso_B[2][2] 1.51 _refine.aniso_B[3][3] -2.27 _refine.aniso_B[1][2] 0.76 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.257 _refine.pdbx_overall_ESU_R_Free 0.225 _refine.overall_SU_ML 0.156 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.830 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1989 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 38 _refine_hist.number_atoms_total 2071 _refine_hist.d_res_high 2.4 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.018 0.020 ? 2075 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.207 1.997 ? 2826 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 7.362 5.000 ? 266 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 34.297 23.924 ? 79 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 20.996 15.000 ? 329 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 21.704 15.000 ? 13 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.173 0.200 ? 325 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.010 0.021 ? 1551 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.3980 _refine_ls_shell.d_res_low 2.4600 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.8100 _refine_ls_shell.number_reflns_R_work 945 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2660 _refine_ls_shell.R_factor_R_free 0.3670 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 54 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.number_reflns_all 999 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4DRE _struct.title 'Mycobacterium tuberculosis InhA in complex with NADH' _struct.pdbx_descriptor 'Enoyl-[acyl-carrier-protein] reductase [NADH] (E.C.1.3.1.9)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DRE _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'enoyl-ACP reductase, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 20 ? GLN A 32 ? SER A 20 GLN A 32 1 ? 13 HELX_P HELX_P2 2 ARG A 43 ? ASP A 52 ? ARG A 43 ASP A 52 1 ? 10 HELX_P HELX_P3 3 ASN A 67 ? GLY A 83 ? ASN A 67 GLY A 83 1 ? 17 HELX_P HELX_P4 4 PRO A 99 ? MET A 103 ? PRO A 99 MET A 103 5 ? 5 HELX_P HELX_P5 5 PRO A 107 ? ALA A 111 ? PRO A 107 ALA A 111 5 ? 5 HELX_P HELX_P6 6 PRO A 112 ? ALA A 124 ? PRO A 112 ALA A 124 1 ? 13 HELX_P HELX_P7 7 ALA A 124 ? LEU A 135 ? ALA A 124 LEU A 135 1 ? 12 HELX_P HELX_P8 8 TYR A 158 ? TYR A 182 ? TYR A 158 TYR A 182 1 ? 25 HELX_P HELX_P9 9 THR A 196 ? GLY A 204 ? THR A 196 GLY A 204 1 ? 9 HELX_P HELX_P10 10 GLY A 208 ? ALA A 226 ? GLY A 208 ALA A 226 1 ? 19 HELX_P HELX_P11 11 ALA A 235 ? SER A 247 ? ALA A 235 SER A 247 1 ? 13 HELX_P HELX_P12 12 GLY A 263 ? GLN A 267 ? GLY A 263 GLN A 267 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 60 ? GLU A 62 ? LEU A 60 GLU A 62 A 2 GLN A 35 ? GLY A 40 ? GLN A 35 GLY A 40 A 3 ARG A 9 ? VAL A 12 ? ARG A 9 VAL A 12 A 4 LEU A 88 ? HIS A 93 ? LEU A 88 HIS A 93 A 5 MET A 138 ? ASP A 148 ? MET A 138 ASP A 148 A 6 ARG A 185 ? ALA A 191 ? ARG A 185 ALA A 191 A 7 ASP A 256 ? ALA A 260 ? ASP A 256 ALA A 260 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 61 ? O LEU A 61 N LEU A 38 ? N LEU A 38 A 2 3 O GLN A 35 ? O GLN A 35 N ILE A 10 ? N ILE A 10 A 3 4 N ARG A 9 ? N ARG A 9 O ASP A 89 ? O ASP A 89 A 4 5 N HIS A 93 ? N HIS A 93 O VAL A 145 ? O VAL A 145 A 5 6 N ASP A 148 ? N ASP A 148 O VAL A 189 ? O VAL A 189 A 6 7 N ALA A 190 ? N ALA A 190 O ALA A 260 ? O ALA A 260 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 25 _struct_site.details 'BINDING SITE FOR RESIDUE NAI A 500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 25 GLY A 14 ? GLY A 14 . ? 1_555 ? 2 AC1 25 ILE A 15 ? ILE A 15 . ? 1_555 ? 3 AC1 25 ILE A 16 ? ILE A 16 . ? 1_555 ? 4 AC1 25 SER A 20 ? SER A 20 . ? 1_555 ? 5 AC1 25 ILE A 21 ? ILE A 21 . ? 1_555 ? 6 AC1 25 PHE A 41 ? PHE A 41 . ? 1_555 ? 7 AC1 25 LEU A 63 ? LEU A 63 . ? 1_555 ? 8 AC1 25 ASP A 64 ? ASP A 64 . ? 1_555 ? 9 AC1 25 VAL A 65 ? VAL A 65 . ? 1_555 ? 10 AC1 25 SER A 94 ? SER A 94 . ? 1_555 ? 11 AC1 25 ILE A 95 ? ILE A 95 . ? 1_555 ? 12 AC1 25 GLY A 96 ? GLY A 96 . ? 1_555 ? 13 AC1 25 ILE A 122 ? ILE A 122 . ? 1_555 ? 14 AC1 25 MET A 147 ? MET A 147 . ? 1_555 ? 15 AC1 25 ASP A 148 ? ASP A 148 . ? 1_555 ? 16 AC1 25 PHE A 149 ? PHE A 149 . ? 1_555 ? 17 AC1 25 LYS A 165 ? LYS A 165 . ? 1_555 ? 18 AC1 25 ALA A 191 ? ALA A 191 . ? 1_555 ? 19 AC1 25 GLY A 192 ? GLY A 192 . ? 1_555 ? 20 AC1 25 PRO A 193 ? PRO A 193 . ? 1_555 ? 21 AC1 25 ILE A 194 ? ILE A 194 . ? 1_555 ? 22 AC1 25 THR A 196 ? THR A 196 . ? 1_555 ? 23 AC1 25 HOH C . ? HOH A 617 . ? 1_555 ? 24 AC1 25 HOH C . ? HOH A 623 . ? 1_555 ? 25 AC1 25 HOH C . ? HOH A 634 . ? 1_555 ? # _database_PDB_matrix.entry_id 4DRE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4DRE _atom_sites.fract_transf_matrix[1][1] 0.010241 _atom_sites.fract_transf_matrix[1][2] 0.005913 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011825 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007165 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 HIS 24 24 24 HIS HIS A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 GLN 32 32 32 GLN GLN A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 GLN 66 66 66 GLN GLN A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 ASN 86 86 86 ASN ASN A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 HIS 93 93 93 HIS HIS A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 MET 98 98 98 MET MET A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 GLN 100 100 100 GLN GLN A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 MET 103 103 103 MET MET A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 PHE 108 108 108 PHE PHE A . n A 1 109 PHE 109 109 109 PHE PHE A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 PRO 112 112 112 PRO PRO A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 VAL 116 116 116 VAL VAL A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 ILE 120 120 120 ILE ILE A . n A 1 121 HIS 121 121 121 HIS HIS A . n A 1 122 ILE 122 122 122 ILE ILE A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 TYR 125 125 125 TYR TYR A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 TYR 127 127 127 TYR TYR A . n A 1 128 ALA 128 128 128 ALA ALA A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 MET 130 130 130 MET MET A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 LYS 132 132 132 LYS LYS A . n A 1 133 ALA 133 133 133 ALA ALA A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 PRO 136 136 136 PRO PRO A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 MET 138 138 138 MET MET A . n A 1 139 ASN 139 139 139 ASN ASN A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 GLY 142 142 142 GLY GLY A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 VAL 145 145 145 VAL VAL A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 MET 147 147 147 MET MET A . n A 1 148 ASP 148 148 148 ASP ASP A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 ASP 150 150 150 ASP ASP A . n A 1 151 PRO 151 151 151 PRO PRO A . n A 1 152 SER 152 152 152 SER SER A . n A 1 153 ARG 153 153 153 ARG ARG A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 MET 155 155 155 MET MET A . n A 1 156 PRO 156 156 156 PRO PRO A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 TYR 158 158 158 TYR TYR A . n A 1 159 ASN 159 159 159 ASN ASN A . n A 1 160 TRP 160 160 160 TRP TRP A . n A 1 161 MET 161 161 161 MET MET A . n A 1 162 THR 162 162 162 THR THR A . n A 1 163 VAL 163 163 163 VAL VAL A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 LYS 165 165 165 LYS LYS A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 ALA 167 167 167 ALA ALA A . n A 1 168 LEU 168 168 168 LEU LEU A . n A 1 169 GLU 169 169 169 GLU GLU A . n A 1 170 SER 170 170 170 SER SER A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 ASN 172 172 172 ASN ASN A . n A 1 173 ARG 173 173 173 ARG ARG A . n A 1 174 PHE 174 174 174 PHE PHE A . n A 1 175 VAL 175 175 175 VAL VAL A . n A 1 176 ALA 176 176 176 ALA ALA A . n A 1 177 ARG 177 177 177 ARG ARG A . n A 1 178 GLU 178 178 178 GLU GLU A . n A 1 179 ALA 179 179 179 ALA ALA A . n A 1 180 GLY 180 180 180 GLY GLY A . n A 1 181 LYS 181 181 181 LYS LYS A . n A 1 182 TYR 182 182 182 TYR TYR A . n A 1 183 GLY 183 183 183 GLY GLY A . n A 1 184 VAL 184 184 184 VAL VAL A . n A 1 185 ARG 185 185 185 ARG ARG A . n A 1 186 SER 186 186 186 SER SER A . n A 1 187 ASN 187 187 187 ASN ASN A . n A 1 188 LEU 188 188 188 LEU LEU A . n A 1 189 VAL 189 189 189 VAL VAL A . n A 1 190 ALA 190 190 190 ALA ALA A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 GLY 192 192 192 GLY GLY A . n A 1 193 PRO 193 193 193 PRO PRO A . n A 1 194 ILE 194 194 194 ILE ILE A . n A 1 195 ARG 195 195 195 ARG ARG A . n A 1 196 THR 196 196 196 THR THR A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 ALA 198 198 198 ALA ALA A . n A 1 199 MET 199 199 199 MET MET A . n A 1 200 SER 200 200 200 SER SER A . n A 1 201 ALA 201 201 201 ALA ALA A . n A 1 202 ILE 202 202 202 ILE ILE A . n A 1 203 VAL 203 203 203 VAL VAL A . n A 1 204 GLY 204 204 204 GLY GLY A . n A 1 205 GLY 205 205 205 GLY GLY A . n A 1 206 ALA 206 206 206 ALA ALA A . n A 1 207 LEU 207 207 207 LEU LEU A . n A 1 208 GLY 208 208 208 GLY GLY A . n A 1 209 GLU 209 209 209 GLU GLU A . n A 1 210 GLU 210 210 210 GLU GLU A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 GLY 212 212 212 GLY GLY A . n A 1 213 ALA 213 213 213 ALA ALA A . n A 1 214 GLN 214 214 214 GLN GLN A . n A 1 215 ILE 215 215 215 ILE ILE A . n A 1 216 GLN 216 216 216 GLN GLN A . n A 1 217 LEU 217 217 217 LEU LEU A . n A 1 218 LEU 218 218 218 LEU LEU A . n A 1 219 GLU 219 219 219 GLU GLU A . n A 1 220 GLU 220 220 220 GLU GLU A . n A 1 221 GLY 221 221 221 GLY GLY A . n A 1 222 TRP 222 222 222 TRP TRP A . n A 1 223 ASP 223 223 223 ASP ASP A . n A 1 224 GLN 224 224 224 GLN GLN A . n A 1 225 ARG 225 225 225 ARG ARG A . n A 1 226 ALA 226 226 226 ALA ALA A . n A 1 227 PRO 227 227 227 PRO PRO A . n A 1 228 ILE 228 228 228 ILE ILE A . n A 1 229 GLY 229 229 229 GLY GLY A . n A 1 230 TRP 230 230 230 TRP TRP A . n A 1 231 ASN 231 231 231 ASN ASN A . n A 1 232 MET 232 232 232 MET MET A . n A 1 233 LYS 233 233 233 LYS LYS A . n A 1 234 ASP 234 234 234 ASP ASP A . n A 1 235 ALA 235 235 235 ALA ALA A . n A 1 236 THR 236 236 236 THR THR A . n A 1 237 PRO 237 237 237 PRO PRO A . n A 1 238 VAL 238 238 238 VAL VAL A . n A 1 239 ALA 239 239 239 ALA ALA A . n A 1 240 LYS 240 240 240 LYS LYS A . n A 1 241 THR 241 241 241 THR THR A . n A 1 242 VAL 242 242 242 VAL VAL A . n A 1 243 CYS 243 243 243 CYS CYS A . n A 1 244 ALA 244 244 244 ALA ALA A . n A 1 245 LEU 245 245 245 LEU LEU A . n A 1 246 LEU 246 246 246 LEU LEU A . n A 1 247 SER 247 247 247 SER SER A . n A 1 248 ASP 248 248 248 ASP ASP A . n A 1 249 TRP 249 249 249 TRP TRP A . n A 1 250 LEU 250 250 250 LEU LEU A . n A 1 251 PRO 251 251 251 PRO PRO A . n A 1 252 ALA 252 252 252 ALA ALA A . n A 1 253 THR 253 253 253 THR THR A . n A 1 254 THR 254 254 254 THR THR A . n A 1 255 GLY 255 255 255 GLY GLY A . n A 1 256 ASP 256 256 256 ASP ASP A . n A 1 257 ILE 257 257 257 ILE ILE A . n A 1 258 ILE 258 258 258 ILE ILE A . n A 1 259 TYR 259 259 259 TYR TYR A . n A 1 260 ALA 260 260 260 ALA ALA A . n A 1 261 ASP 261 261 261 ASP ASP A . n A 1 262 GLY 262 262 262 GLY GLY A . n A 1 263 GLY 263 263 263 GLY GLY A . n A 1 264 ALA 264 264 264 ALA ALA A . n A 1 265 HIS 265 265 265 HIS HIS A . n A 1 266 THR 266 266 266 THR THR A . n A 1 267 GLN 267 267 267 GLN GLN A . n A 1 268 LEU 268 268 268 LEU LEU A . n A 1 269 LEU 269 269 269 LEU LEU A . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3,4 A,B,C 2 1,3 A,B,C 3 1,4 A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 18840 ? 1 MORE -121 ? 1 'SSA (A^2)' 33670 ? 2 'ABSA (A^2)' 5240 ? 2 MORE -38 ? 2 'SSA (A^2)' 21010 ? 3 'ABSA (A^2)' 5100 ? 3 MORE -35 ? 3 'SSA (A^2)' 21160 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_455 -x-1,-y,z -1.0000000000 0.0000000000 0.0000000000 -97.6490000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 11_455 -x+y-1,y,-z -1.0000000000 0.0000000000 0.0000000000 -97.6490000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-03 2 'Structure model' 1 1 2012-10-17 3 'Structure model' 1 2 2017-03-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.6.0117 ? 3 XDS 'data reduction' . ? 4 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CE2 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 TRP _pdbx_validate_rmsd_bond.auth_seq_id_1 249 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 TRP _pdbx_validate_rmsd_bond.auth_seq_id_2 249 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.489 _pdbx_validate_rmsd_bond.bond_target_value 1.409 _pdbx_validate_rmsd_bond.bond_deviation 0.080 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A LEU 11 ? ? CB A LEU 11 ? ? CG A LEU 11 ? ? 135.50 115.30 20.20 2.30 N 2 1 CA A LEU 61 ? ? CB A LEU 61 ? ? CG A LEU 61 ? ? 129.91 115.30 14.61 2.30 N 3 1 CB A ASP 150 ? ? CG A ASP 150 ? ? OD1 A ASP 150 ? ? 123.70 118.30 5.40 0.90 N 4 1 NE A ARG 173 ? ? CZ A ARG 173 ? ? NH1 A ARG 173 ? ? 112.71 120.30 -7.59 0.50 N 5 1 NE A ARG 173 ? ? CZ A ARG 173 ? ? NH2 A ARG 173 ? ? 125.61 120.30 5.31 0.50 N 6 1 NE A ARG 195 ? ? CZ A ARG 195 ? ? NH2 A ARG 195 ? ? 117.27 120.30 -3.03 0.50 N 7 1 CA A LEU 269 ? ? CB A LEU 269 ? ? CG A LEU 269 ? ? 131.60 115.30 16.30 2.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 41 ? ? -95.59 -63.22 2 1 ASP A 42 ? ? -130.16 -31.29 3 1 ARG A 43 ? ? -108.52 77.45 4 1 PRO A 55 ? ? -56.72 -9.97 5 1 PHE A 97 ? ? -171.74 141.69 6 1 MET A 103 ? ? -144.19 -12.96 7 1 ASP A 150 ? ? -47.36 105.07 8 1 ALA A 157 ? ? 70.72 -40.95 9 1 ASN A 159 ? ? 45.84 -126.31 10 1 LEU A 250 ? ? -119.61 56.38 11 1 ALA A 260 ? ? -108.47 76.29 12 1 ASP A 261 ? ? -144.50 11.35 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLY _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 104 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ILE _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 105 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 143.41 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A THR 2 ? A THR 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' NAI 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAI 1 500 500 NAI NAD A . C 3 HOH 1 601 7 HOH HOH A . C 3 HOH 2 602 18 HOH HOH A . C 3 HOH 3 603 19 HOH HOH A . C 3 HOH 4 604 33 HOH HOH A . C 3 HOH 5 605 39 HOH HOH A . C 3 HOH 6 606 59 HOH HOH A . C 3 HOH 7 607 80 HOH HOH A . C 3 HOH 8 608 85 HOH HOH A . C 3 HOH 9 609 91 HOH HOH A . C 3 HOH 10 610 103 HOH HOH A . C 3 HOH 11 611 104 HOH HOH A . C 3 HOH 12 612 126 HOH HOH A . C 3 HOH 13 613 127 HOH HOH A . C 3 HOH 14 614 130 HOH HOH A . C 3 HOH 15 615 133 HOH HOH A . C 3 HOH 16 616 135 HOH HOH A . C 3 HOH 17 617 136 HOH HOH A . C 3 HOH 18 618 142 HOH HOH A . C 3 HOH 19 619 150 HOH HOH A . C 3 HOH 20 620 161 HOH HOH A . C 3 HOH 21 621 165 HOH HOH A . C 3 HOH 22 622 166 HOH HOH A . C 3 HOH 23 623 167 HOH HOH A . C 3 HOH 24 624 168 HOH HOH A . C 3 HOH 25 625 172 HOH HOH A . C 3 HOH 26 626 173 HOH HOH A . C 3 HOH 27 627 174 HOH HOH A . C 3 HOH 28 628 175 HOH HOH A . C 3 HOH 29 629 176 HOH HOH A . C 3 HOH 30 630 178 HOH HOH A . C 3 HOH 31 631 179 HOH HOH A . C 3 HOH 32 632 180 HOH HOH A . C 3 HOH 33 633 182 HOH HOH A . C 3 HOH 34 634 183 HOH HOH A . C 3 HOH 35 635 184 HOH HOH A . C 3 HOH 36 636 188 HOH HOH A . C 3 HOH 37 637 190 HOH HOH A . C 3 HOH 38 638 191 HOH HOH A . #