HEADER LIGASE 17-FEB-12 4DS2 TITLE UBIQUITIN CONJUGATING ENZYME (PUTATIVE) FROM TRYPANOSOMA CRUZI COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 3 ORGANISM_TAXID: 5693; SOURCE 4 GENE: TC00.1047053506635.90, TCCLB.506635.90; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, STRUCTURAL KEYWDS 2 GENOMICS OF PATHOGENIC PROTOZOA CONSORTIUM, SGPP, UBCC SUPERFAMILY, KEYWDS 3 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR E.A.MERRITT,STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA CONSORTIUM AUTHOR 2 (SGPP) REVDAT 3 28-FEB-24 4DS2 1 SEQADV REVDAT 2 15-NOV-17 4DS2 1 REMARK REVDAT 1 29-FEB-12 4DS2 0 JRNL AUTH E.A.MERRITT,T.ARAKAKI,A.NAPULI,W.C.VAN VOORHIS,F.S.BUCKNER, JRNL AUTH 2 E.FAN,F.ZUCKER,L.M.J.VERLINDE,J.KIM,W.G.J.HOL JRNL TITL UBIQUITIN CONJUGATING ENZYME (PUTATIVE) FROM TRYPANOSOMA JRNL TITL 2 CRUZI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 3 NUMBER OF REFLECTIONS : 11703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 555 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 404 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 47.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 18 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2508 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.11000 REMARK 3 B22 (A**2) : -1.26000 REMARK 3 B33 (A**2) : -2.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.999 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.361 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.265 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.522 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.900 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2580 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1745 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3511 ; 1.644 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4234 ; 1.178 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 7.269 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;33.571 ;23.817 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 415 ;17.777 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.070 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 385 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2881 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 539 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 0 A 1 A 159 0 REMARK 3 0 B 1 B 159 0 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3070 9.9450 14.1060 REMARK 3 T TENSOR REMARK 3 T11: 0.1960 T22: 0.2374 REMARK 3 T33: 0.0724 T12: 0.0370 REMARK 3 T13: 0.0027 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 1.3976 L22: 4.6837 REMARK 3 L33: 4.5187 L12: -0.4077 REMARK 3 L13: -1.0951 L23: 2.7376 REMARK 3 S TENSOR REMARK 3 S11: -0.1030 S12: -0.0987 S13: 0.0273 REMARK 3 S21: 0.4407 S22: -0.1850 S23: 0.4517 REMARK 3 S31: 0.0654 S32: -0.2475 S33: 0.2879 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2620 15.6300 16.6510 REMARK 3 T TENSOR REMARK 3 T11: 0.2501 T22: 0.1028 REMARK 3 T33: 0.0823 T12: -0.0091 REMARK 3 T13: 0.0433 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 1.2149 L22: 3.4202 REMARK 3 L33: 3.0560 L12: 0.9073 REMARK 3 L13: 0.9114 L23: 0.7573 REMARK 3 S TENSOR REMARK 3 S11: -0.1031 S12: -0.0821 S13: 0.0562 REMARK 3 S21: -0.4810 S22: -0.0200 S23: -0.2870 REMARK 3 S31: -0.2084 S32: -0.0362 S33: 0.1231 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7270 17.7980 27.7260 REMARK 3 T TENSOR REMARK 3 T11: 0.1905 T22: 0.1197 REMARK 3 T33: 0.0830 T12: -0.0087 REMARK 3 T13: 0.0188 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.9189 L22: 6.1534 REMARK 3 L33: 1.0668 L12: 0.6638 REMARK 3 L13: 0.5313 L23: 1.6720 REMARK 3 S TENSOR REMARK 3 S11: 0.0877 S12: -0.1748 S13: 0.0663 REMARK 3 S21: 0.1016 S22: 0.0537 S23: -0.3030 REMARK 3 S31: 0.1740 S32: -0.0726 S33: -0.1415 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 153 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4850 34.3060 28.8870 REMARK 3 T TENSOR REMARK 3 T11: 0.5995 T22: 0.1897 REMARK 3 T33: 0.3826 T12: -0.0775 REMARK 3 T13: 0.1700 T23: -0.1012 REMARK 3 L TENSOR REMARK 3 L11: 4.2049 L22: 39.7521 REMARK 3 L33: 11.0746 L12: 3.1450 REMARK 3 L13: -6.6281 L23: -0.1274 REMARK 3 S TENSOR REMARK 3 S11: 0.9737 S12: 0.2015 S13: 0.4359 REMARK 3 S21: 1.3259 S22: -0.3805 S23: 0.6851 REMARK 3 S31: -1.4249 S32: -0.4045 S33: -0.5932 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 37 REMARK 3 ORIGIN FOR THE GROUP (A): 35.9550 40.7320 10.3490 REMARK 3 T TENSOR REMARK 3 T11: 0.2997 T22: 0.1210 REMARK 3 T33: 0.0551 T12: -0.0066 REMARK 3 T13: 0.0088 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 4.5528 L22: 5.3448 REMARK 3 L33: 3.7617 L12: -1.3559 REMARK 3 L13: 2.4303 L23: -0.9991 REMARK 3 S TENSOR REMARK 3 S11: -0.2264 S12: 0.3799 S13: 0.4096 REMARK 3 S21: 0.1467 S22: -0.0356 S23: -0.0135 REMARK 3 S31: -0.4349 S32: 0.1396 S33: 0.2620 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 38 B 88 REMARK 3 ORIGIN FOR THE GROUP (A): 28.1370 33.0220 8.8950 REMARK 3 T TENSOR REMARK 3 T11: 0.2196 T22: 0.0745 REMARK 3 T33: 0.0727 T12: 0.0347 REMARK 3 T13: 0.0263 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 3.2892 L22: 0.8095 REMARK 3 L33: 4.3333 L12: 0.6440 REMARK 3 L13: 2.3323 L23: 0.3246 REMARK 3 S TENSOR REMARK 3 S11: -0.1596 S12: -0.1605 S13: 0.0508 REMARK 3 S21: 0.2010 S22: 0.1069 S23: 0.1913 REMARK 3 S31: 0.1111 S32: -0.2604 S33: 0.0527 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 89 B 144 REMARK 3 ORIGIN FOR THE GROUP (A): 28.8360 27.5880 -2.3710 REMARK 3 T TENSOR REMARK 3 T11: 0.1881 T22: 0.1152 REMARK 3 T33: 0.0237 T12: -0.0325 REMARK 3 T13: -0.0116 T23: 0.0442 REMARK 3 L TENSOR REMARK 3 L11: 3.1666 L22: 2.0490 REMARK 3 L33: 2.4187 L12: 0.6932 REMARK 3 L13: 0.9355 L23: 0.6418 REMARK 3 S TENSOR REMARK 3 S11: -0.2157 S12: 0.0599 S13: -0.0330 REMARK 3 S21: -0.2334 S22: 0.2263 S23: 0.0041 REMARK 3 S31: 0.0340 S32: -0.0395 S33: -0.0106 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 145 B 160 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1230 25.3340 -8.6840 REMARK 3 T TENSOR REMARK 3 T11: 0.2650 T22: 0.3475 REMARK 3 T33: 0.3506 T12: -0.0852 REMARK 3 T13: -0.2093 T23: 0.1293 REMARK 3 L TENSOR REMARK 3 L11: 10.8555 L22: 12.8212 REMARK 3 L33: 24.8975 L12: -1.4272 REMARK 3 L13: -5.4736 L23: 8.2495 REMARK 3 S TENSOR REMARK 3 S11: -0.5881 S12: 0.6931 S13: 0.1215 REMARK 3 S21: -0.7983 S22: 0.1983 S23: 1.1639 REMARK 3 S31: 0.1702 S32: -0.7676 S33: 0.3898 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 4DS2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11741 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.630 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.39400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION BUFFER: 100 MM KH2PO4, REMARK 280 50 MM SODIUM CITRATE PH 4.0, 4% PEG 20000, 2% PEG 400. PROTEIN REMARK 280 BUFFER: 20 MM HEPES PH 7.5, 500 MM NACL, 2 MM DTT, 5% GLYCEROL. REMARK 280 CRYO: ETHYLENE GLYCOL, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.06950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.55850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.18800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.55850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.06950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.18800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ASN A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 GLY A 30 REMARK 465 ARG A 162 REMARK 465 GLY A 163 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 ASN B 27 REMARK 465 SER B 28 REMARK 465 SER B 29 REMARK 465 GLY B 30 REMARK 465 GLY B 161 REMARK 465 ARG B 162 REMARK 465 GLY B 163 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 LYS B 2 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 75 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 24 39.06 -73.33 REMARK 500 GLU A 25 -40.46 -133.45 REMARK 500 ASP A 43 80.36 -152.14 REMARK 500 THR A 44 156.20 80.89 REMARK 500 ARG A 135 -126.86 -130.95 REMARK 500 ARG A 160 -78.69 -76.74 REMARK 500 ASN B 24 40.93 -73.43 REMARK 500 GLU B 25 -44.56 -136.02 REMARK 500 THR B 44 158.73 79.49 REMARK 500 ARG B 135 -127.68 -132.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SGPP-TCRU011138AAA RELATED DB: TARGETTRACK DBREF 4DS2 A 1 163 UNP Q4DIQ3 Q4DIQ3_TRYCC 1 163 DBREF 4DS2 B 1 163 UNP Q4DIQ3 Q4DIQ3_TRYCC 1 163 SEQADV 4DS2 GLY A -3 UNP Q4DIQ3 EXPRESSION TAG SEQADV 4DS2 PRO A -2 UNP Q4DIQ3 EXPRESSION TAG SEQADV 4DS2 GLY A -1 UNP Q4DIQ3 EXPRESSION TAG SEQADV 4DS2 SER A 0 UNP Q4DIQ3 EXPRESSION TAG SEQADV 4DS2 GLY B -3 UNP Q4DIQ3 EXPRESSION TAG SEQADV 4DS2 PRO B -2 UNP Q4DIQ3 EXPRESSION TAG SEQADV 4DS2 GLY B -1 UNP Q4DIQ3 EXPRESSION TAG SEQADV 4DS2 SER B 0 UNP Q4DIQ3 EXPRESSION TAG SEQRES 1 A 167 GLY PRO GLY SER MET LYS ASN ILE SER ASN LYS ARG ILE SEQRES 2 A 167 ILE LYS ASP LEU LYS LEU LEU LEU GLU GLU VAL ASP ALA SEQRES 3 A 167 ASN ASN GLU ALA ASN SER SER GLY SER PRO HIS SER THR SEQRES 4 A 167 ALA ILE PHE SER VAL ASP THR ASP THR ILE TYR ASN TRP SEQRES 5 A 167 ILE LEU LYS VAL LYS ALA PRO ALA ASP SER VAL TYR GLY SEQRES 6 A 167 GLY ALA GLY ASN THR TYR GLN LEU SER VAL LEU PHE SER SEQRES 7 A 167 ASP ASP TYR PRO HIS GLU PRO PRO THR VAL ARG PHE VAL SEQRES 8 A 167 THR PRO VAL TYR SER PRO LEU VAL THR GLY GLU GLY GLY SEQRES 9 A 167 ILE CYS ASP ARG MET VAL ASN ASP PHE TRP THR PRO ASP SEQRES 10 A 167 GLN HIS ALA SER ASP VAL ILE LYS LEU VAL LEU ASP ARG SEQRES 11 A 167 VAL PHE SER GLN TYR LYS SER ARG ARG ASP ASP ASP VAL SEQRES 12 A 167 ASN PRO GLU ALA ARG HIS TYR LEU GLU LYS PHE PRO GLN SEQRES 13 A 167 ASP PHE ALA ALA ARG VAL ARG ARG GLY ARG GLY SEQRES 1 B 167 GLY PRO GLY SER MET LYS ASN ILE SER ASN LYS ARG ILE SEQRES 2 B 167 ILE LYS ASP LEU LYS LEU LEU LEU GLU GLU VAL ASP ALA SEQRES 3 B 167 ASN ASN GLU ALA ASN SER SER GLY SER PRO HIS SER THR SEQRES 4 B 167 ALA ILE PHE SER VAL ASP THR ASP THR ILE TYR ASN TRP SEQRES 5 B 167 ILE LEU LYS VAL LYS ALA PRO ALA ASP SER VAL TYR GLY SEQRES 6 B 167 GLY ALA GLY ASN THR TYR GLN LEU SER VAL LEU PHE SER SEQRES 7 B 167 ASP ASP TYR PRO HIS GLU PRO PRO THR VAL ARG PHE VAL SEQRES 8 B 167 THR PRO VAL TYR SER PRO LEU VAL THR GLY GLU GLY GLY SEQRES 9 B 167 ILE CYS ASP ARG MET VAL ASN ASP PHE TRP THR PRO ASP SEQRES 10 B 167 GLN HIS ALA SER ASP VAL ILE LYS LEU VAL LEU ASP ARG SEQRES 11 B 167 VAL PHE SER GLN TYR LYS SER ARG ARG ASP ASP ASP VAL SEQRES 12 B 167 ASN PRO GLU ALA ARG HIS TYR LEU GLU LYS PHE PRO GLN SEQRES 13 B 167 ASP PHE ALA ALA ARG VAL ARG ARG GLY ARG GLY FORMUL 3 HOH *13(H2 O) HELIX 1 1 ASN A 6 ASN A 24 1 19 HELIX 2 2 SER A 58 GLY A 62 5 5 HELIX 3 3 ASP A 103 ASP A 108 1 6 HELIX 4 4 HIS A 115 SER A 129 1 15 HELIX 5 5 ASN A 140 PHE A 150 1 11 HELIX 6 6 PHE A 150 ARG A 159 1 10 HELIX 7 7 ASN B 6 ASN B 24 1 19 HELIX 8 8 SER B 58 GLY B 62 5 5 HELIX 9 9 ASP B 103 ASP B 108 1 6 HELIX 10 10 HIS B 115 SER B 129 1 15 HELIX 11 11 ASN B 140 PHE B 150 1 11 HELIX 12 12 PHE B 150 ARG B 159 1 10 SHEET 1 A 4 ALA A 36 THR A 42 0 SHEET 2 A 4 ASN A 47 LYS A 53 -1 O LYS A 53 N ALA A 36 SHEET 3 A 4 THR A 66 LEU A 72 -1 O VAL A 71 N TRP A 48 SHEET 4 A 4 THR A 83 PHE A 86 -1 O THR A 83 N LEU A 72 SHEET 1 B 4 ALA B 36 THR B 42 0 SHEET 2 B 4 ASN B 47 LYS B 53 -1 O LYS B 53 N ALA B 36 SHEET 3 B 4 THR B 66 LEU B 72 -1 O VAL B 71 N TRP B 48 SHEET 4 B 4 THR B 83 PHE B 86 -1 O THR B 83 N LEU B 72 CISPEP 1 TYR A 77 PRO A 78 0 13.71 CISPEP 2 TYR B 77 PRO B 78 0 10.56 CRYST1 60.139 70.376 99.117 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016628 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010089 0.00000