HEADER ISOMERASE 18-FEB-12 4DSH TITLE CRYSTAL STRUCTURE OF REDUCED UDP-GALACTOPYRANOSE MUTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GALACTOPYRANOSE MUTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.4.99.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 3 ORGANISM_TAXID: 5693; SOURCE 4 GENE: TC00.1047053507993.160; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSMANN FOLD, FLAVIN ADENINE DINUCLEOTIDE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.DHATWALIA,H.SINGH,J.J.TANNER REVDAT 3 13-SEP-23 4DSH 1 REMARK SEQADV REVDAT 2 05-SEP-12 4DSH 1 JRNL REVDAT 1 13-JUN-12 4DSH 0 JRNL AUTH R.DHATWALIA,H.SINGH,M.OPPENHEIMER,P.SOBRADO,J.J.TANNER JRNL TITL CRYSTAL STRUCTURES OF TRYPANOSOMA CRUZI UDP-GALACTOPYRANOSE JRNL TITL 2 MUTASE IMPLICATE FLEXIBILITY OF THE HISTIDINE LOOP IN ENZYME JRNL TITL 3 ACTIVATION. JRNL REF BIOCHEMISTRY V. 51 4968 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22646091 JRNL DOI 10.1021/BI300498C REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.2_432 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 102877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 5134 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9117 - 4.8459 0.99 10348 557 0.1707 0.1876 REMARK 3 2 4.8459 - 3.8469 1.00 9907 531 0.1304 0.1518 REMARK 3 3 3.8469 - 3.3608 1.00 9809 516 0.1801 0.2059 REMARK 3 4 3.3608 - 3.0536 1.00 9776 504 0.1994 0.2278 REMARK 3 5 3.0536 - 2.8347 1.00 9694 515 0.1876 0.2247 REMARK 3 6 2.8347 - 2.6676 1.00 9694 498 0.1936 0.2427 REMARK 3 7 2.6676 - 2.5340 1.00 9663 543 0.2030 0.2386 REMARK 3 8 2.5340 - 2.4237 1.00 9665 480 0.2125 0.2674 REMARK 3 9 2.4237 - 2.3304 1.00 9603 496 0.2252 0.2782 REMARK 3 10 2.3304 - 2.2500 1.00 9584 494 0.2381 0.2853 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 20.23 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.31090 REMARK 3 B22 (A**2) : 3.31090 REMARK 3 B33 (A**2) : -6.62170 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7914 REMARK 3 ANGLE : 1.106 10820 REMARK 3 CHIRALITY : 0.073 1138 REMARK 3 PLANARITY : 0.005 1374 REMARK 3 DIHEDRAL : 15.538 2929 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 65.6826 -12.4597 -35.3515 REMARK 3 T TENSOR REMARK 3 T11: 0.1531 T22: 0.0444 REMARK 3 T33: 0.0655 T12: -0.0313 REMARK 3 T13: 0.0031 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.1462 L22: 0.7861 REMARK 3 L33: 0.2070 L12: 0.0230 REMARK 3 L13: 0.0229 L23: -0.4412 REMARK 3 S TENSOR REMARK 3 S11: -0.0302 S12: -0.0175 S13: -0.0030 REMARK 3 S21: 0.1534 S22: 0.0018 S23: 0.0561 REMARK 3 S31: -0.0977 S32: -0.0087 S33: 0.0229 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 69.9004 -41.9500 -67.6645 REMARK 3 T TENSOR REMARK 3 T11: 0.0395 T22: 0.0581 REMARK 3 T33: 0.0402 T12: -0.0201 REMARK 3 T13: -0.0293 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.4699 L22: 0.4046 REMARK 3 L33: 0.2583 L12: -0.0299 REMARK 3 L13: 0.0635 L23: 0.0898 REMARK 3 S TENSOR REMARK 3 S11: 0.0161 S12: -0.0035 S13: 0.0524 REMARK 3 S21: -0.0606 S22: 0.0181 S23: 0.0173 REMARK 3 S31: 0.0092 S32: 0.0604 S33: -0.0320 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DSH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070725. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102978 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 47.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.52600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3UTE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M AMMONIUM SULFATE, 0.5% PEG8000, REMARK 280 0.1 M HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 236.25933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 118.12967 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 177.19450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.06483 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 295.32417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 236.25933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 118.12967 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 59.06483 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 177.19450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 295.32417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -2 REMARK 465 ILE A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 477 REMARK 465 LYS A 478 REMARK 465 ASP A 479 REMARK 465 MET A 480 REMARK 465 VAL A 481 REMARK 465 ALA B -2 REMARK 465 ILE B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 LEU B 4 REMARK 465 LEU B 5 REMARK 465 GLY B 466 REMARK 465 THR B 467 REMARK 465 ARG B 468 REMARK 465 ALA B 469 REMARK 465 THR B 470 REMARK 465 LEU B 476 REMARK 465 GLN B 477 REMARK 465 LYS B 478 REMARK 465 ASP B 479 REMARK 465 MET B 480 REMARK 465 VAL B 481 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 LYS A 115 CE NZ REMARK 470 GLU A 131 OE1 OE2 REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 ASP A 150 OD1 OD2 REMARK 470 GLU A 171 CD OE1 OE2 REMARK 470 GLU A 174 OE1 OE2 REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 LYS A 278 CD CE NZ REMARK 470 LYS A 336 NZ REMARK 470 GLU A 341 CG CD OE1 OE2 REMARK 470 LYS A 354 CD CE NZ REMARK 470 GLU A 407 CG CD OE1 OE2 REMARK 470 ARG A 428 CZ NH1 NH2 REMARK 470 GLU A 454 OE1 OE2 REMARK 470 ASN A 460 CG OD1 ND2 REMARK 470 ARG A 463 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 31 CE NZ REMARK 470 GLU B 52 OE1 OE2 REMARK 470 LYS B 115 CE NZ REMARK 470 GLU B 131 CG CD OE1 OE2 REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 470 GLU B 174 OE1 OE2 REMARK 470 ARG B 184 NH1 NH2 REMARK 470 ARG B 187 NH1 NH2 REMARK 470 GLU B 226 CG CD OE1 OE2 REMARK 470 LYS B 273 CE NZ REMARK 470 LYS B 278 CG CD CE NZ REMARK 470 GLU B 282 OE1 OE2 REMARK 470 LYS B 336 NZ REMARK 470 GLU B 341 CG CD OE1 OE2 REMARK 470 LYS B 354 CD CE NZ REMARK 470 GLU B 407 CG CD OE1 OE2 REMARK 470 GLU B 412 OE1 OE2 REMARK 470 ARG B 428 CZ NH1 NH2 REMARK 470 GLU B 454 CD OE1 OE2 REMARK 470 ARG B 463 CG CD NE CZ NH1 NH2 REMARK 470 THR B 471 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 152 -59.90 -123.30 REMARK 500 ASN A 192 55.73 39.57 REMARK 500 PHE A 234 40.08 -100.82 REMARK 500 CYS A 314 -78.79 -105.30 REMARK 500 THR A 467 -168.42 -124.60 REMARK 500 PHE B 152 -55.72 -125.84 REMARK 500 PHE B 234 42.78 -103.88 REMARK 500 CYS B 314 -83.05 -100.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FDA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FDA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DSG RELATED DB: PDB DBREF 4DSH A 1 480 UNP Q4E1W2 Q4E1W2_TRYCC 1 480 DBREF 4DSH B 1 480 UNP Q4E1W2 Q4E1W2_TRYCC 1 480 SEQADV 4DSH ALA A -2 UNP Q4E1W2 EXPRESSION TAG SEQADV 4DSH ILE A -1 UNP Q4E1W2 EXPRESSION TAG SEQADV 4DSH ALA A 0 UNP Q4E1W2 EXPRESSION TAG SEQADV 4DSH VAL A 481 UNP Q4E1W2 CLONING ARTIFACT SEQADV 4DSH ALA B -2 UNP Q4E1W2 EXPRESSION TAG SEQADV 4DSH ILE B -1 UNP Q4E1W2 EXPRESSION TAG SEQADV 4DSH ALA B 0 UNP Q4E1W2 EXPRESSION TAG SEQADV 4DSH VAL B 481 UNP Q4E1W2 CLONING ARTIFACT SEQRES 1 A 484 ALA ILE ALA MET ALA GLU LEU LEU THR PRO LYS ILE VAL SEQRES 2 A 484 ILE ILE GLY ALA GLY PRO THR GLY LEU GLY ALA ALA VAL SEQRES 3 A 484 ARG LEU THR GLU LEU GLY TYR LYS ASN TRP HIS LEU TYR SEQRES 4 A 484 GLU CYS ASN ASP THR PRO GLY GLY LEU SER ARG SER PHE SEQRES 5 A 484 LEU ASP GLU ASN GLY PHE THR TRP ASP LEU GLY GLY HIS SEQRES 6 A 484 VAL ILE PHE SER HIS TYR GLN TYR PHE ASP ASP VAL MET SEQRES 7 A 484 ASP TRP ALA VAL GLN GLY TRP ASN VAL LEU GLN ARG GLU SEQRES 8 A 484 SER TRP VAL TRP VAL ARG GLY ARG TRP VAL PRO TYR PRO SEQRES 9 A 484 PHE GLN ASN ASN ILE HIS ARG LEU PRO GLU GLN ASP ARG SEQRES 10 A 484 LYS ARG CYS LEU ASP GLU LEU VAL ARG SER HIS ALA ARG SEQRES 11 A 484 THR TYR THR GLU PRO PRO ASN ASN PHE GLU GLU SER PHE SEQRES 12 A 484 THR ARG GLN PHE GLY GLU GLY ILE ALA ASP ILE PHE MET SEQRES 13 A 484 ARG PRO TYR ASN PHE LYS VAL TRP ALA VAL PRO PRO CYS SEQRES 14 A 484 LEU MET SER THR GLU TRP VAL GLU GLU ARG VAL ALA PRO SEQRES 15 A 484 VAL ASP LEU GLU ARG ILE ARG ARG ASN ILE GLN GLU ASN SEQRES 16 A 484 ARG ASP ASP LEU GLY TRP GLY PRO ASN ALA THR PHE ARG SEQRES 17 A 484 PHE PRO GLN ARG GLY GLY THR GLY ILE ILE TYR GLN ALA SEQRES 18 A 484 ILE LYS GLU LYS LEU PRO SER GLU LYS LEU THR PHE ASN SEQRES 19 A 484 SER GLY PHE GLN ALA ILE ALA ILE ASP ALA ASP ALA LYS SEQRES 20 A 484 THR ILE THR PHE SER ASN GLY GLU VAL VAL SER TYR ASP SEQRES 21 A 484 TYR LEU ILE SER THR VAL PRO PHE ASP ASN LEU LEU ARG SEQRES 22 A 484 MET THR LYS GLY THR GLY PHE LYS GLY TYR ASP GLU TRP SEQRES 23 A 484 PRO ALA ILE ALA ASP LYS MET VAL TYR SER SER THR ASN SEQRES 24 A 484 VAL ILE GLY ILE GLY VAL LYS GLY THR PRO PRO PRO HIS SEQRES 25 A 484 LEU LYS THR ALA CYS TRP LEU TYR PHE PRO GLU ASP THR SEQRES 26 A 484 SER PRO PHE TYR ARG ALA THR VAL PHE SER ASN TYR SER SEQRES 27 A 484 LYS TYR ASN VAL PRO GLU GLY HIS TRP SER LEU MET LEU SEQRES 28 A 484 GLU VAL SER GLU SER LYS TYR LYS PRO VAL ASN HIS SER SEQRES 29 A 484 THR LEU ILE GLU ASP CYS ILE VAL GLY CYS LEU ALA SER SEQRES 30 A 484 ASN LEU LEU LEU PRO GLU ASP LEU LEU VAL SER LYS TRP SEQRES 31 A 484 HIS TYR ARG ILE GLU LYS GLY TYR PRO THR PRO PHE ILE SEQRES 32 A 484 GLY ARG ASN ASN LEU LEU GLU LYS ALA GLN PRO GLU LEU SEQRES 33 A 484 MET SER ARG CYS ILE TYR SER ARG GLY ARG PHE GLY ALA SEQRES 34 A 484 TRP ARG TYR GLU VAL GLY ASN GLN ASP HIS SER PHE MET SEQRES 35 A 484 GLN GLY VAL GLU ALA ILE ASP HIS VAL LEU GLY LEU ALA SEQRES 36 A 484 THR GLU GLU THR THR VAL ALA ASN PRO GLY ARG VAL ASN SEQRES 37 A 484 GLY THR ARG ALA THR THR HIS PHE GLY LEU LEU GLN LYS SEQRES 38 A 484 ASP MET VAL SEQRES 1 B 484 ALA ILE ALA MET ALA GLU LEU LEU THR PRO LYS ILE VAL SEQRES 2 B 484 ILE ILE GLY ALA GLY PRO THR GLY LEU GLY ALA ALA VAL SEQRES 3 B 484 ARG LEU THR GLU LEU GLY TYR LYS ASN TRP HIS LEU TYR SEQRES 4 B 484 GLU CYS ASN ASP THR PRO GLY GLY LEU SER ARG SER PHE SEQRES 5 B 484 LEU ASP GLU ASN GLY PHE THR TRP ASP LEU GLY GLY HIS SEQRES 6 B 484 VAL ILE PHE SER HIS TYR GLN TYR PHE ASP ASP VAL MET SEQRES 7 B 484 ASP TRP ALA VAL GLN GLY TRP ASN VAL LEU GLN ARG GLU SEQRES 8 B 484 SER TRP VAL TRP VAL ARG GLY ARG TRP VAL PRO TYR PRO SEQRES 9 B 484 PHE GLN ASN ASN ILE HIS ARG LEU PRO GLU GLN ASP ARG SEQRES 10 B 484 LYS ARG CYS LEU ASP GLU LEU VAL ARG SER HIS ALA ARG SEQRES 11 B 484 THR TYR THR GLU PRO PRO ASN ASN PHE GLU GLU SER PHE SEQRES 12 B 484 THR ARG GLN PHE GLY GLU GLY ILE ALA ASP ILE PHE MET SEQRES 13 B 484 ARG PRO TYR ASN PHE LYS VAL TRP ALA VAL PRO PRO CYS SEQRES 14 B 484 LEU MET SER THR GLU TRP VAL GLU GLU ARG VAL ALA PRO SEQRES 15 B 484 VAL ASP LEU GLU ARG ILE ARG ARG ASN ILE GLN GLU ASN SEQRES 16 B 484 ARG ASP ASP LEU GLY TRP GLY PRO ASN ALA THR PHE ARG SEQRES 17 B 484 PHE PRO GLN ARG GLY GLY THR GLY ILE ILE TYR GLN ALA SEQRES 18 B 484 ILE LYS GLU LYS LEU PRO SER GLU LYS LEU THR PHE ASN SEQRES 19 B 484 SER GLY PHE GLN ALA ILE ALA ILE ASP ALA ASP ALA LYS SEQRES 20 B 484 THR ILE THR PHE SER ASN GLY GLU VAL VAL SER TYR ASP SEQRES 21 B 484 TYR LEU ILE SER THR VAL PRO PHE ASP ASN LEU LEU ARG SEQRES 22 B 484 MET THR LYS GLY THR GLY PHE LYS GLY TYR ASP GLU TRP SEQRES 23 B 484 PRO ALA ILE ALA ASP LYS MET VAL TYR SER SER THR ASN SEQRES 24 B 484 VAL ILE GLY ILE GLY VAL LYS GLY THR PRO PRO PRO HIS SEQRES 25 B 484 LEU LYS THR ALA CYS TRP LEU TYR PHE PRO GLU ASP THR SEQRES 26 B 484 SER PRO PHE TYR ARG ALA THR VAL PHE SER ASN TYR SER SEQRES 27 B 484 LYS TYR ASN VAL PRO GLU GLY HIS TRP SER LEU MET LEU SEQRES 28 B 484 GLU VAL SER GLU SER LYS TYR LYS PRO VAL ASN HIS SER SEQRES 29 B 484 THR LEU ILE GLU ASP CYS ILE VAL GLY CYS LEU ALA SER SEQRES 30 B 484 ASN LEU LEU LEU PRO GLU ASP LEU LEU VAL SER LYS TRP SEQRES 31 B 484 HIS TYR ARG ILE GLU LYS GLY TYR PRO THR PRO PHE ILE SEQRES 32 B 484 GLY ARG ASN ASN LEU LEU GLU LYS ALA GLN PRO GLU LEU SEQRES 33 B 484 MET SER ARG CYS ILE TYR SER ARG GLY ARG PHE GLY ALA SEQRES 34 B 484 TRP ARG TYR GLU VAL GLY ASN GLN ASP HIS SER PHE MET SEQRES 35 B 484 GLN GLY VAL GLU ALA ILE ASP HIS VAL LEU GLY LEU ALA SEQRES 36 B 484 THR GLU GLU THR THR VAL ALA ASN PRO GLY ARG VAL ASN SEQRES 37 B 484 GLY THR ARG ALA THR THR HIS PHE GLY LEU LEU GLN LYS SEQRES 38 B 484 ASP MET VAL HET UDP A 501 25 HET FDA A 502 53 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET EPE A 506 15 HET FDA B 501 53 HET UDP B 502 25 HET SO4 B 503 5 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM FDA DIHYDROFLAVINE-ADENINE DINUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 3 UDP 2(C9 H14 N2 O12 P2) FORMUL 4 FDA 2(C27 H35 N9 O15 P2) FORMUL 5 SO4 4(O4 S 2-) FORMUL 8 EPE C8 H18 N2 O4 S FORMUL 12 HOH *246(H2 O) HELIX 1 1 GLY A 15 GLY A 29 1 15 HELIX 2 2 GLY A 43 SER A 46 5 4 HELIX 3 3 TYR A 68 VAL A 79 1 12 HELIX 4 4 PRO A 101 LEU A 109 5 9 HELIX 5 5 PRO A 110 ALA A 126 1 17 HELIX 6 6 ASN A 135 PHE A 152 1 18 HELIX 7 7 PHE A 152 ALA A 162 1 11 HELIX 8 8 PRO A 164 MET A 168 5 5 HELIX 9 9 THR A 170 GLU A 174 5 5 HELIX 10 10 ASP A 181 ASN A 192 1 12 HELIX 11 11 THR A 212 LEU A 223 1 12 HELIX 12 12 PRO A 224 GLU A 226 5 3 HELIX 13 13 SER A 232 PHE A 234 5 3 HELIX 14 14 PRO A 264 MET A 271 1 8 HELIX 15 15 GLY A 279 ASP A 281 5 3 HELIX 16 16 GLU A 282 MET A 290 1 9 HELIX 17 17 PRO A 307 LYS A 311 5 5 HELIX 18 18 PHE A 331 TYR A 334 5 4 HELIX 19 19 SER A 335 VAL A 339 5 5 HELIX 20 20 THR A 362 SER A 374 1 13 HELIX 21 21 GLY A 401 SER A 415 1 15 HELIX 22 22 ARG A 428 GLY A 432 5 5 HELIX 23 23 ASN A 433 LEU A 449 1 17 HELIX 24 24 GLU A 455 ASN A 460 1 6 HELIX 25 25 ASN A 460 THR A 467 1 8 HELIX 26 26 GLY B 15 LEU B 28 1 14 HELIX 27 27 GLY B 43 SER B 46 5 4 HELIX 28 28 TYR B 68 VAL B 79 1 12 HELIX 29 29 PRO B 101 LEU B 109 5 9 HELIX 30 30 PRO B 110 ARG B 127 1 18 HELIX 31 31 ASN B 135 PHE B 152 1 18 HELIX 32 32 PHE B 152 ALA B 162 1 11 HELIX 33 33 PRO B 164 MET B 168 5 5 HELIX 34 34 THR B 170 GLU B 174 5 5 HELIX 35 35 ASP B 181 ASN B 192 1 12 HELIX 36 36 THR B 212 LEU B 223 1 12 HELIX 37 37 PRO B 224 GLU B 226 5 3 HELIX 38 38 SER B 232 PHE B 234 5 3 HELIX 39 39 PRO B 264 MET B 271 1 8 HELIX 40 40 GLY B 279 ASP B 281 5 3 HELIX 41 41 GLU B 282 MET B 290 1 9 HELIX 42 42 PRO B 307 LYS B 311 5 5 HELIX 43 43 PHE B 331 TYR B 334 5 4 HELIX 44 44 SER B 335 VAL B 339 5 5 HELIX 45 45 THR B 362 SER B 374 1 13 HELIX 46 46 GLY B 401 ARG B 416 1 16 HELIX 47 47 ARG B 428 GLY B 432 5 5 HELIX 48 48 ASN B 433 LEU B 449 1 17 HELIX 49 49 GLU B 455 ASN B 460 1 6 HELIX 50 50 ASN B 460 ASN B 465 1 6 SHEET 1 A 5 LEU A 228 PHE A 230 0 SHEET 2 A 5 TRP A 33 GLU A 37 1 N GLU A 37 O THR A 229 SHEET 3 A 5 ILE A 9 ILE A 12 1 N ILE A 11 O TYR A 36 SHEET 4 A 5 TYR A 258 SER A 261 1 O ILE A 260 N VAL A 10 SHEET 5 A 5 ILE A 418 SER A 420 1 O TYR A 419 N LEU A 259 SHEET 1 B 2 SER A 48 LEU A 50 0 SHEET 2 B 2 THR A 56 ASP A 58 -1 O TRP A 57 N PHE A 49 SHEET 1 C 2 TRP A 82 GLN A 86 0 SHEET 2 C 2 THR A 203 PRO A 207 -1 O PHE A 206 N ASN A 83 SHEET 1 D 7 ARG A 96 PRO A 99 0 SHEET 2 D 7 TRP A 90 VAL A 93 -1 N VAL A 91 O VAL A 98 SHEET 3 D 7 TRP A 315 TYR A 317 1 O TYR A 317 N TRP A 92 SHEET 4 D 7 ARG A 327 THR A 329 -1 O ALA A 328 N LEU A 316 SHEET 5 D 7 HIS A 343 GLU A 352 -1 O MET A 347 N THR A 329 SHEET 6 D 7 TYR A 292 LYS A 303 -1 N ILE A 298 O LEU A 348 SHEET 7 D 7 LEU A 383 PRO A 396 -1 O ILE A 391 N THR A 295 SHEET 1 E 4 VAL A 253 SER A 255 0 SHEET 2 E 4 THR A 245 PHE A 248 -1 N ILE A 246 O VAL A 254 SHEET 3 E 4 ALA A 236 ASP A 240 -1 N ALA A 238 O THR A 247 SHEET 4 E 4 THR A 272 LYS A 273 1 O LYS A 273 N ILE A 239 SHEET 1 F 5 LEU B 228 PHE B 230 0 SHEET 2 F 5 TRP B 33 GLU B 37 1 N GLU B 37 O THR B 229 SHEET 3 F 5 ILE B 9 ILE B 12 1 N ILE B 11 O HIS B 34 SHEET 4 F 5 TYR B 258 SER B 261 1 O ILE B 260 N VAL B 10 SHEET 5 F 5 ILE B 418 SER B 420 1 O TYR B 419 N LEU B 259 SHEET 1 G 2 SER B 48 LEU B 50 0 SHEET 2 G 2 THR B 56 ASP B 58 -1 O TRP B 57 N PHE B 49 SHEET 1 H 2 TRP B 82 GLN B 86 0 SHEET 2 H 2 THR B 203 PRO B 207 -1 O PHE B 204 N LEU B 85 SHEET 1 I 7 ARG B 96 PRO B 99 0 SHEET 2 I 7 TRP B 90 VAL B 93 -1 N VAL B 91 O VAL B 98 SHEET 3 I 7 TRP B 315 TYR B 317 1 O TYR B 317 N TRP B 90 SHEET 4 I 7 ARG B 327 THR B 329 -1 O ALA B 328 N LEU B 316 SHEET 5 I 7 HIS B 343 GLU B 352 -1 O MET B 347 N THR B 329 SHEET 6 I 7 TYR B 292 LYS B 303 -1 N SER B 294 O GLU B 352 SHEET 7 I 7 LEU B 383 PRO B 396 -1 O TRP B 387 N GLY B 299 SHEET 1 J 4 VAL B 253 SER B 255 0 SHEET 2 J 4 THR B 245 PHE B 248 -1 N ILE B 246 O VAL B 254 SHEET 3 J 4 ALA B 236 ASP B 240 -1 N ALA B 238 O THR B 247 SHEET 4 J 4 THR B 272 LYS B 273 1 O LYS B 273 N ILE B 239 SSBOND 1 CYS A 166 CYS B 166 1555 1555 2.11 CISPEP 1 TYR A 100 PRO A 101 0 -4.88 CISPEP 2 TYR B 100 PRO B 101 0 -1.24 SITE 1 AC1 20 TYR A 100 PRO A 101 PHE A 102 GLN A 103 SITE 2 AC1 20 PHE A 152 MET A 153 ASN A 157 TRP A 161 SITE 3 AC1 20 ARG A 176 VAL A 177 TYR A 317 ARG A 327 SITE 4 AC1 20 TYR A 395 TYR A 429 HOH A 616 HOH A 630 SITE 5 AC1 20 HOH A 632 HOH A 633 HOH A 634 HOH A 671 SITE 1 AC2 35 ILE A 12 GLY A 13 GLY A 15 PRO A 16 SITE 2 AC2 35 THR A 17 GLU A 37 CYS A 38 ASN A 39 SITE 3 AC2 35 GLY A 44 LEU A 45 SER A 46 LEU A 59 SITE 4 AC2 35 GLY A 61 HIS A 62 VAL A 63 PHE A 65 SITE 5 AC2 35 PHE A 234 GLN A 235 ALA A 236 VAL A 263 SITE 6 AC2 35 GLU A 349 GLY A 394 GLY A 422 ARG A 423 SITE 7 AC2 35 GLY A 432 ASN A 433 GLN A 434 SER A 437 SITE 8 AC2 35 HOH A 601 HOH A 605 HOH A 617 HOH A 619 SITE 9 AC2 35 HOH A 660 HOH A 664 HOH A 715 SITE 1 AC3 4 ARG A 270 TYR A 292 HOH A 644 HOH A 665 SITE 1 AC4 4 HIS A 388 TYR A 389 ARG A 390 EPE A 506 SITE 1 AC5 4 VAL A 358 ASN A 359 HIS A 360 SER A 361 SITE 1 AC6 7 HIS A 388 TYR A 389 ARG A 390 GLU A 392 SITE 2 AC6 7 SO4 A 504 HOH A 668 HOH A 709 SITE 1 AC7 35 ILE B 12 GLY B 13 GLY B 15 PRO B 16 SITE 2 AC7 35 THR B 17 GLU B 37 CYS B 38 ASN B 39 SITE 3 AC7 35 GLY B 43 GLY B 44 LEU B 45 SER B 46 SITE 4 AC7 35 LEU B 59 GLY B 61 HIS B 62 VAL B 63 SITE 5 AC7 35 PHE B 234 GLN B 235 ALA B 236 THR B 262 SITE 6 AC7 35 VAL B 263 GLU B 349 GLY B 394 GLY B 422 SITE 7 AC7 35 ARG B 423 GLY B 432 ASN B 433 GLN B 434 SITE 8 AC7 35 SER B 437 HOH B 602 HOH B 605 HOH B 628 SITE 9 AC7 35 HOH B 629 HOH B 632 HOH B 671 SITE 1 AC8 20 TYR B 100 PRO B 101 PHE B 102 GLN B 103 SITE 2 AC8 20 PHE B 152 MET B 153 ASN B 157 TRP B 161 SITE 3 AC8 20 ARG B 176 VAL B 177 TYR B 317 ARG B 327 SITE 4 AC8 20 TYR B 395 TYR B 429 HOH B 603 HOH B 604 SITE 5 AC8 20 HOH B 641 HOH B 642 HOH B 644 HOH B 668 SITE 1 AC9 5 ASP B 266 ARG B 270 TYR B 292 HOH B 664 SITE 2 AC9 5 HOH B 703 CRYST1 143.840 143.840 354.389 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006952 0.004014 0.000000 0.00000 SCALE2 0.000000 0.008028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002822 0.00000