HEADER TOXIN 21-FEB-12 4DTH TITLE STRUCTURE OF A VGRG VIBRIO CHOLERAE TOXIN ACD DOMAIN IN COMPLEX WITH TITLE 2 ATP AND MG++ COMPND MOL_ID: 1; COMPND 2 MOLECULE: VGRG PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 716-1111; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: O395; SOURCE 5 GENE: VC_1416, VGRG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETG-20A KEYWDS ALPHA-BETA PROTEIN, ACTIN CROSS-LINKING TOXIN, G-ACTIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR E.DURAND,G.AUDOLY,E.DERREZ,S.SPINELLI,M.ORTIZ-LOMBARDIA,E.CASCALES, AUTHOR 2 D.RAOULT,C.CAMBILLAU REVDAT 2 28-FEB-24 4DTH 1 REMARK LINK REVDAT 1 29-AUG-12 4DTH 0 JRNL AUTH E.DURAND,G.AUDOLY,E.DERREZ,S.SPINELLI,M.ORTIZ-LOMBARDIA, JRNL AUTH 2 E.CASCALES,D.RAOULT,C.CAMBILLAU JRNL TITL STRUCTURE OF A VGRG VIBRIO CHOLERAE TOXIN ACD DOMAIN IN JRNL TITL 2 COMPLEX WITH ATP AND MG++ JRNL REF J.BIOL.CHEM. 2012 JRNL REFN ESSN 1083-351X REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 62135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1883 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.83 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4531 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2165 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4400 REMARK 3 BIN R VALUE (WORKING SET) : 0.2155 REMARK 3 BIN FREE R VALUE : 0.2467 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.89 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 131 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2757 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 568 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.30020 REMARK 3 B22 (A**2) : -3.30020 REMARK 3 B33 (A**2) : 6.60030 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.220 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.086 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2949 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4027 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1017 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 84 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 434 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2949 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 393 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3898 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.19 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.47 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A 0 A 17 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4906 89.2502 16.6126 REMARK 3 T TENSOR REMARK 3 T11: -0.0318 T22: 0.0514 REMARK 3 T33: -0.0158 T12: -0.0289 REMARK 3 T13: 0.0366 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.3434 L22: 0.0000 REMARK 3 L33: 0.0369 L12: 0.2751 REMARK 3 L13: 0.2338 L23: -0.2613 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: -0.0032 S13: -0.0033 REMARK 3 S21: 0.0101 S22: -0.0012 S23: -0.0100 REMARK 3 S31: 0.0107 S32: -0.0082 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: A 18 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): 46.0848 90.0388 6.2749 REMARK 3 T TENSOR REMARK 3 T11: -0.0476 T22: 0.0540 REMARK 3 T33: -0.0158 T12: -0.0141 REMARK 3 T13: 0.0101 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.4307 L22: 0.0000 REMARK 3 L33: 0.0344 L12: -0.0632 REMARK 3 L13: -0.4570 L23: 0.0843 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: -0.0079 S13: -0.0310 REMARK 3 S21: 0.0037 S22: -0.0075 S23: 0.0070 REMARK 3 S31: 0.0088 S32: -0.0060 S33: 0.0020 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: A 54 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): 55.0496 88.1179 -7.1972 REMARK 3 T TENSOR REMARK 3 T11: -0.0551 T22: 0.0621 REMARK 3 T33: -0.0039 T12: 0.0108 REMARK 3 T13: 0.0043 T23: -0.0474 REMARK 3 L TENSOR REMARK 3 L11: 0.2853 L22: 0.1653 REMARK 3 L33: 0.7117 L12: 0.1439 REMARK 3 L13: 0.1540 L23: 0.2035 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: 0.0107 S13: -0.0126 REMARK 3 S21: -0.0021 S22: 0.0088 S23: 0.0032 REMARK 3 S31: 0.0059 S32: 0.0033 S33: -0.0105 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: A 79 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 46.4952 98.6218 11.3384 REMARK 3 T TENSOR REMARK 3 T11: -0.0559 T22: 0.0585 REMARK 3 T33: -0.0246 T12: -0.0342 REMARK 3 T13: 0.0085 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.4576 L22: 0.3468 REMARK 3 L33: 0.6675 L12: -0.0731 REMARK 3 L13: 0.5532 L23: 0.0816 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: -0.0194 S13: 0.0175 REMARK 3 S21: 0.0260 S22: -0.0193 S23: -0.0081 REMARK 3 S31: -0.0011 S32: -0.0152 S33: 0.0209 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: A 117 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 54.1452 93.2795 9.4957 REMARK 3 T TENSOR REMARK 3 T11: -0.0393 T22: 0.0663 REMARK 3 T33: -0.0263 T12: -0.0047 REMARK 3 T13: -0.0008 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.0195 L22: 0.0050 REMARK 3 L33: 0.0423 L12: -0.0446 REMARK 3 L13: -0.1082 L23: 0.2511 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: -0.0172 S13: -0.0056 REMARK 3 S21: 0.0029 S22: -0.0088 S23: 0.0051 REMARK 3 S31: 0.0008 S32: 0.0094 S33: 0.0070 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: A 144 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): 40.7390 99.1438 2.8176 REMARK 3 T TENSOR REMARK 3 T11: -0.0364 T22: 0.0265 REMARK 3 T33: -0.0143 T12: -0.0135 REMARK 3 T13: 0.0236 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.2386 L22: 0.1655 REMARK 3 L33: 0.4726 L12: 0.0805 REMARK 3 L13: 0.4561 L23: 0.0032 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: -0.0013 S13: 0.0133 REMARK 3 S21: 0.0033 S22: -0.0040 S23: 0.0130 REMARK 3 S31: -0.0222 S32: -0.0002 S33: 0.0066 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: A 171 A 206 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2941 91.3463 13.2065 REMARK 3 T TENSOR REMARK 3 T11: -0.1037 T22: 0.1041 REMARK 3 T33: -0.0064 T12: 0.0340 REMARK 3 T13: 0.0144 T23: -0.0494 REMARK 3 L TENSOR REMARK 3 L11: 0.6619 L22: 0.0000 REMARK 3 L33: 0.5709 L12: -0.2402 REMARK 3 L13: -0.4452 L23: 0.1736 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: -0.0171 S13: 0.0062 REMARK 3 S21: 0.0146 S22: 0.0041 S23: 0.0068 REMARK 3 S31: -0.0126 S32: -0.0109 S33: -0.0067 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: A 207 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4183 85.7524 4.0131 REMARK 3 T TENSOR REMARK 3 T11: -0.1023 T22: 0.0859 REMARK 3 T33: 0.0060 T12: 0.0107 REMARK 3 T13: 0.0015 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.9805 L22: 0.2085 REMARK 3 L33: 0.0965 L12: 0.3310 REMARK 3 L13: 0.2720 L23: -0.0975 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.0464 S13: 0.0056 REMARK 3 S21: -0.0222 S22: -0.0031 S23: 0.0034 REMARK 3 S31: 0.0002 S32: -0.0210 S33: 0.0013 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: A 237 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7441 85.7852 -7.2003 REMARK 3 T TENSOR REMARK 3 T11: -0.0488 T22: 0.0647 REMARK 3 T33: -0.0238 T12: 0.0069 REMARK 3 T13: -0.0161 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.8433 L22: 0.0183 REMARK 3 L33: 0.4801 L12: 0.1717 REMARK 3 L13: -0.7486 L23: -0.1996 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: 0.0030 S13: 0.0062 REMARK 3 S21: -0.0217 S22: 0.0128 S23: -0.0071 REMARK 3 S31: 0.0217 S32: 0.0013 S33: -0.0020 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: A 270 A 319 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9414 78.2093 4.3797 REMARK 3 T TENSOR REMARK 3 T11: -0.1185 T22: 0.1003 REMARK 3 T33: 0.0135 T12: -0.0197 REMARK 3 T13: -0.0171 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 1.0616 L22: 0.0000 REMARK 3 L33: 0.8260 L12: -0.3286 REMARK 3 L13: -0.3411 L23: -0.1651 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: -0.0144 S13: -0.0462 REMARK 3 S21: 0.0069 S22: -0.0143 S23: -0.0036 REMARK 3 S31: 0.0296 S32: -0.0236 S33: 0.0073 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: A 320 A 343 REMARK 3 ORIGIN FOR THE GROUP (A): 26.2310 86.5707 15.7554 REMARK 3 T TENSOR REMARK 3 T11: -0.0409 T22: 0.0731 REMARK 3 T33: -0.0301 T12: -0.0194 REMARK 3 T13: -0.0140 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 0.4887 L22: 0.0833 REMARK 3 L33: 0.1142 L12: 0.1110 REMARK 3 L13: 0.3150 L23: -0.1151 REMARK 3 S TENSOR REMARK 3 S11: 0.0068 S12: -0.0006 S13: -0.0016 REMARK 3 S21: 0.0135 S22: -0.0028 S23: -0.0066 REMARK 3 S31: 0.0061 S32: -0.0074 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: A 344 A 355 REMARK 3 ORIGIN FOR THE GROUP (A): 32.7734 105.1590 10.6926 REMARK 3 T TENSOR REMARK 3 T11: -0.0107 T22: 0.0183 REMARK 3 T33: 0.0008 T12: -0.0007 REMARK 3 T13: 0.0243 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.0187 L22: 0.0997 REMARK 3 L33: 0.0816 L12: -0.0269 REMARK 3 L13: -0.0124 L23: 0.1705 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: -0.0036 S13: 0.0030 REMARK 3 S21: -0.0037 S22: -0.0016 S23: 0.0031 REMARK 3 S31: -0.0073 S32: -0.0019 S33: 0.0020 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: A 401 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9500 88.2508 9.2754 REMARK 3 T TENSOR REMARK 3 T11: -0.0085 T22: 0.0064 REMARK 3 T33: -0.0033 T12: -0.0066 REMARK 3 T13: -0.0032 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.0268 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0337 REMARK 3 L13: 0.0111 L23: 0.0285 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: -0.0021 S13: -0.0012 REMARK 3 S21: -0.0023 S22: -0.0007 S23: -0.0007 REMARK 3 S31: 0.0013 S32: -0.0001 S33: 0.0002 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DTH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070761. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : KIRKPATRICK-BAEZ PAIR OF BI- REMARK 200 MORPH MIRRORS PLUS CHANNEL CUT REMARK 200 CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : KIRKPATRICK-BAEZ PAIR OF BI- REMARK 200 MORPH MIRRORS PLUS CHANNEL CUT REMARK 200 CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62298 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.51400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MIXING 300 NL OF PROTEIN AT 13MG/ML REMARK 280 WITH 100 NL OF 2.4 M AMSO4, 0.1 M BI-TRIS PH 6,3. , VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K, PH 6.3 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.41000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.61500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.20500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.41000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 19.20500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.61500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -188.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 128.68000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 128.68000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -19.20500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A -11 REMARK 465 ALA A -10 REMARK 465 GLN A -9 REMARK 465 PRO A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 GLY A -5 REMARK 465 ARG A -4 REMARK 465 SER A -3 REMARK 465 THR A -2 REMARK 465 LYS A -1 REMARK 465 SER A 356 REMARK 465 THR A 357 REMARK 465 THR A 358 REMARK 465 LYS A 359 REMARK 465 SER A 360 REMARK 465 GLU A 361 REMARK 465 VAL A 362 REMARK 465 LYS A 363 REMARK 465 LEU A 364 REMARK 465 LEU A 365 REMARK 465 ASP A 366 REMARK 465 GLN A 367 REMARK 465 PHE A 368 REMARK 465 ASP A 369 REMARK 465 PRO A 370 REMARK 465 MET A 371 REMARK 465 LYS A 372 REMARK 465 ARG A 373 REMARK 465 LYS A 374 REMARK 465 THR A 375 REMARK 465 VAL A 376 REMARK 465 ILE A 377 REMARK 465 GLN A 378 REMARK 465 GLN A 379 REMARK 465 VAL A 380 REMARK 465 GLU A 381 REMARK 465 SER A 382 REMARK 465 LEU A 383 REMARK 465 VAL A 384 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 355 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 10 -147.61 -136.18 REMARK 500 ASP A 51 -91.61 -128.07 REMARK 500 ASN A 238 -116.86 54.99 REMARK 500 ASN A 238 -116.86 58.01 REMARK 500 GLU A 264 -59.82 73.25 REMARK 500 ALA A 317 70.28 -153.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 16 OE1 REMARK 620 2 GLN A 162 OE1 90.9 REMARK 620 3 GLU A 339 OE2 99.1 104.1 REMARK 620 4 HOH A1044 O 119.0 131.7 107.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 16 OE2 REMARK 620 2 GLU A 78 OE1 103.6 REMARK 620 3 HOH A 985 O 98.0 91.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DTD RELATED DB: PDB REMARK 900 STRUCTURE OF A VGRG VIBRIO CHOLERAE TOXIN ACD DOMAIN NATIVE SE REMARK 900 RELATED ID: 4DTF RELATED DB: PDB REMARK 900 STRUCTURE OF A VGRG VIBRIO CHOLERAE TOXIN ACD DOMAIN IN COMPLEX REMARK 900 WITH AMP-PNP AND MG++ REMARK 900 RELATED ID: 4DTL RELATED DB: PDB REMARK 900 RELATED ID: 4DTQ RELATED DB: PDB DBREF 4DTH A -11 384 UNP Q9KS45 Q9KS45_VIBCH 716 1111 SEQRES 1 A 396 ASN ALA GLN PRO ASN LEU GLY ARG SER THR LYS ALA THR SEQRES 2 A 396 PRO ASP PHE PRO THR HIS PHE PRO LYS SER SER ILE GLY SEQRES 3 A 396 ILE GLU ASN GLU LEU ALA GLY LEU VAL VAL ALA MET PRO SEQRES 4 A 396 ALA ASN SER ALA GLN LYS PHE GLY TYR VAL LYS SER ALA SEQRES 5 A 396 GLN GLY ASP ALA LEU PHE MET LEU THR LYS ASP MET ASN SEQRES 6 A 396 GLN GLY SER TYR GLN ARG PRO PRO SER LEU GLN ASP GLY SEQRES 7 A 396 LYS ASN TYR GLN ASN TRP GLN THR HIS THR VAL GLU LEU SEQRES 8 A 396 VAL SER TYR PRO CYS GLU MET ASP ASP LYS ALA ALA VAL SEQRES 9 A 396 GLU THR ARG LYS GLN ALA MET LEU TRP LEU ALA THR HIS SEQRES 10 A 396 PHE THR THR HIS ILE ASP GLN SER ASN HIS GLN PRO LEU SEQRES 11 A 396 ALA PRO ILE GLN SER GLU ASP GLY ARG PHE VAL ILE GLU SEQRES 12 A 396 ILE THR ASN ALA LYS HIS VAL ILE ALA ALA GLY ASN GLY SEQRES 13 A 396 ILE SER ALA GLU SER GLN GLY GLN THR ILE THR MET THR SEQRES 14 A 396 PRO SER GLY GLN GLN ALA THR VAL GLY VAL ALA ALA LYS SEQRES 15 A 396 GLY PHE GLY THR SER ALA THR PRO GLU LEU ARG LEU LEU SEQRES 16 A 396 GLU SER ALA PRO TRP TYR GLN LYS SER LEU LYS SER GLN SEQRES 17 A 396 PHE ALA SER LEU THR SER ALA GLU ASN LEU ASP ASP LYS SEQRES 18 A 396 GLU LEU ALA ALA ASN VAL PHE ALA TYR LEU THR SER ILE SEQRES 19 A 396 TYR LEU LYS THR ALA GLU LEU ALA LYS LYS PHE GLY ILE SEQRES 20 A 396 TYR ILE ASN GLU TRP ASP PRO MET SER GLU GLN ILE THR SEQRES 21 A 396 PRO ASN ALA ASN GLY LEU THR ASP PRO LYS VAL LYS ASN SEQRES 22 A 396 ALA TRP GLU ILE LEU PRO ARG THR LYS PRO SER LYS ILE SEQRES 23 A 396 VAL GLU ILE LEU SER LYS SER ASP ALA LYS ALA VAL MET SEQRES 24 A 396 LYS HIS ILE LYS PRO GLN LEU GLN SER ARG TYR SER GLU SEQRES 25 A 396 SER LEU SER LYS ASN VAL PHE GLN TYR PHE GLN ASP GLY SEQRES 26 A 396 GLY GLU VAL ALA GLY HIS GLY ILE ASN ASN ALA THR VAL SEQRES 27 A 396 GLY ASP LYS HIS SER PRO GLU LEU ALA ILE LEU PHE GLU SEQRES 28 A 396 PHE ARG THR VAL PRO ASN GLU LEU GLN SER TYR LEU PRO SEQRES 29 A 396 LYS THR GLU SER THR THR LYS SER GLU VAL LYS LEU LEU SEQRES 30 A 396 ASP GLN PHE ASP PRO MET LYS ARG LYS THR VAL ILE GLN SEQRES 31 A 396 GLN VAL GLU SER LEU VAL HET ATP A 401 31 HET GOL A 402 6 HET MG A 403 1 HET MG A 404 1 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 GOL C3 H8 O3 FORMUL 4 MG 2(MG 2+) FORMUL 6 SO4 5(O4 S 2-) FORMUL 11 HOH *568(H2 O) HELIX 1 1 PRO A 60 GLN A 64 5 5 HELIX 2 2 ASP A 88 SER A 113 1 26 HELIX 3 3 THR A 157 SER A 159 5 3 HELIX 4 4 LYS A 170 PHE A 172 5 3 HELIX 5 5 THR A 177 SER A 185 1 9 HELIX 6 6 SER A 192 THR A 201 1 10 HELIX 7 7 ASP A 208 GLY A 234 1 27 HELIX 8 8 ASP A 241 GLN A 246 5 6 HELIX 9 9 ASP A 256 GLU A 264 1 9 HELIX 10 10 LYS A 270 LEU A 278 5 9 HELIX 11 11 SER A 279 SER A 296 1 18 HELIX 12 12 SER A 299 ASP A 312 1 14 HELIX 13 13 PRO A 344 LEU A 351 5 8 SHEET 1 A10 VAL A 138 ALA A 141 0 SHEET 2 A10 LEU A 22 MET A 26 -1 N VAL A 23 O ALA A 140 SHEET 3 A10 GLN A 73 SER A 81 -1 O GLN A 73 N MET A 26 SHEET 4 A10 ALA A 44 SER A 56 -1 N GLY A 55 O THR A 74 SHEET 5 A10 LYS A 33 SER A 39 -1 N GLY A 35 O LEU A 48 SHEET 6 A10 PHE A 128 ILE A 132 -1 O GLU A 131 N TYR A 36 SHEET 7 A10 HIS A 7 PHE A 8 0 SHEET 8 A10 THR A 325 ASP A 328 1 O THR A 325 N PHE A 8 SHEET 9 A10 SER A 331 PHE A 340 -1 O GLU A 333 N VAL A 326 SHEET 10 A10 ILE A 265 PRO A 267 -1 N LEU A 266 O GLU A 339 SHEET 1 B 3 GLN A 161 ALA A 168 0 SHEET 2 B 3 SER A 12 GLU A 18 -1 N GLY A 14 O THR A 164 SHEET 3 B 3 CYS A 84 GLU A 85 -1 O CYS A 84 N ILE A 13 LINK OE1 GLU A 16 MG MG A 403 1555 1555 2.86 LINK OE2 GLU A 16 MG MG A 404 1555 1555 2.57 LINK OE1 GLU A 78 MG MG A 404 1555 1555 2.91 LINK OE1 GLN A 162 MG MG A 403 1555 1555 2.50 LINK OE2 GLU A 339 MG MG A 403 1555 1555 2.65 LINK MG MG A 403 O HOH A1044 1555 1555 2.95 LINK MG MG A 404 O HOH A 985 1555 1555 2.99 SITE 1 AC1 24 PHE A 4 SER A 12 GLY A 14 ILE A 15 SITE 2 AC1 24 GLU A 16 VAL A 80 SER A 81 PRO A 83 SITE 3 AC1 24 THR A 164 LYS A 260 ARG A 268 HIS A 319 SITE 4 AC1 24 ILE A 321 LEU A 337 GLU A 339 MG A 404 SITE 5 AC1 24 HOH A 525 HOH A 537 HOH A 593 HOH A 660 SITE 6 AC1 24 HOH A 823 HOH A 985 HOH A 993 HOH A 998 SITE 1 AC2 7 GLN A 32 LYS A 50 GLY A 55 SER A 56 SITE 2 AC2 7 HIS A 75 HOH A 628 HOH A 956 SITE 1 AC3 4 GLU A 16 GLN A 162 GLU A 339 HOH A1044 SITE 1 AC4 5 GLU A 16 GLU A 78 VAL A 80 ATP A 401 SITE 2 AC4 5 HOH A 985 SITE 1 AC5 8 MET A 52 PRO A 257 LYS A 260 ARG A 341 SITE 2 AC5 8 HOH A 706 HOH A 717 HOH A 977 HOH A1044 SITE 1 AC6 10 ALA A 141 GLY A 142 ASN A 143 GLY A 144 SITE 2 AC6 10 ILE A 145 SER A 146 HOH A 565 HOH A 682 SITE 3 AC6 10 HOH A 762 HOH A 833 SITE 1 AC7 6 TRP A 101 HIS A 105 ILE A 121 GLU A 124 SITE 2 AC7 6 HOH A 966 HOH A 967 SITE 1 AC8 6 THR A 157 PRO A 158 SER A 159 HOH A 759 SITE 2 AC8 6 HOH A 952 HOH A 992 SITE 1 AC9 6 GLU A 228 LYS A 231 TYR A 298 HOH A 576 SITE 2 AC9 6 HOH A 796 HOH A1067 CRYST1 128.680 128.680 76.820 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007771 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013017 0.00000