HEADER OXIDOREDUCTASE 22-FEB-12 4DUP TITLE CRYSTAL STRUCTURE OF A QUINONE OXIDOREDUCTASE FROM RHIZOBIUM ETLI CFN TITLE 2 42 COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUINONE OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM ETLI; SOURCE 3 ORGANISM_TAXID: 347834; SOURCE 4 STRAIN: CFN 42; SOURCE 5 GENE: RHE_CH01141; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS PSI-BIOLOGY, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, YORK KEYWDS 2 STRUCTURAL GENOMICS RESEARCH CONSORTIUM, NYSGRC, KEYWDS 3 P53_INDUCIBLE_OXIDOREDUCTASE, NEW YORK STRUCTURAL GENOMICS RESEARCH KEYWDS 4 CONSORTIUM, ROSSMANN FOLD, NAD(P) BINDING DOMAIN, QUINONE KEYWDS 5 OXIDOREDUCTASE, NAD(P)H, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KUMARAN,S.RICE,B.EVANS,R.FOTI,A.GIZZI,B.HILLERICH,A.KAR,J.LAFLEUR, AUTHOR 2 R.SEIDEL,G.VILLIGAS,W.ZENCHECK,S.C.ALMO,S.SWAMINATHAN,NEW YORK AUTHOR 3 STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 1 07-MAR-12 4DUP 0 JRNL AUTH D.KUMARAN,S.RICE,S.C.ALMO,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF A QUINONE OXIDOREDUCTASE FROM RHIZOBIUM JRNL TITL 2 ETLI CFN 42 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1495 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1866 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4764 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.66000 REMARK 3 B22 (A**2) : -0.68000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.412 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.304 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.221 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.528 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4850 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6573 ; 1.902 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 638 ; 7.478 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;39.096 ;23.716 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 747 ;19.931 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;22.589 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 756 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3634 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-12. REMARK 100 THE RCSB ID CODE IS RCSB070805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI III REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29550 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.200 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : 0.27500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHELXE AND ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CITRATE 25% PEG 3350, PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 45.85350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.41150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.85350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 71.41150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MSE B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 GLY B 81 REMARK 465 VAL B 82 REMARK 465 SER B 83 REMARK 465 GLY B 84 REMARK 465 GLY B 178 REMARK 465 SER B 179 REMARK 465 THR B 180 REMARK 465 GLY B 181 REMARK 465 LYS B 182 REMARK 465 CYS B 183 REMARK 465 GLU B 184 REMARK 465 GLU B 320 REMARK 465 GLY B 321 REMARK 465 SER B 322 REMARK 465 HIS B 323 REMARK 465 VAL B 324 REMARK 465 GLY B 325 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 303 CG HIS B 303 CD2 0.067 REMARK 500 HIS B 315 CG HIS B 315 CD2 0.057 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 242 CG1 - CB - CG2 ANGL. DEV. = -16.1 DEGREES REMARK 500 MSE B 21 CG - SE - CE ANGL. DEV. = -17.0 DEGREES REMARK 500 ARG B 273 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 -160.79 -78.62 REMARK 500 PRO A 4 152.16 -40.71 REMARK 500 SER A 14 -174.97 -171.35 REMARK 500 ASP A 62 10.28 -69.90 REMARK 500 VAL A 76 -14.94 -143.96 REMARK 500 VAL A 87 131.23 -39.20 REMARK 500 PRO B 4 -178.03 -66.88 REMARK 500 GLN B 5 -70.02 -83.65 REMARK 500 SER B 14 -96.36 -176.10 REMARK 500 ARG B 26 -177.46 -176.79 REMARK 500 VAL B 30 -83.21 -75.05 REMARK 500 ALA B 31 88.03 122.51 REMARK 500 LEU B 69 -51.52 93.15 REMARK 500 ASN B 96 60.39 -61.34 REMARK 500 TYR B 100 44.16 -73.13 REMARK 500 ASP B 119 166.07 -32.12 REMARK 500 LYS B 252 74.64 22.05 REMARK 500 ASP B 310 23.92 -68.80 REMARK 500 LEU B 318 13.14 -63.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-014350 RELATED DB: TARGETTRACK DBREF 4DUP A 1 331 UNP Q2KB38 Q2KB38_RHIEC 1 331 DBREF 4DUP B 1 331 UNP Q2KB38 Q2KB38_RHIEC 1 331 SEQADV 4DUP MSE A -21 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP HIS A -20 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP HIS A -19 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP HIS A -18 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP HIS A -17 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP HIS A -16 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP HIS A -15 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP SER A -14 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP SER A -13 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP GLY A -12 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP VAL A -11 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP ASP A -10 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP LEU A -9 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP GLY A -8 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP THR A -7 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP GLU A -6 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP ASN A -5 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP LEU A -4 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP TYR A -3 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP PHE A -2 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP GLN A -1 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP SER A 0 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP MSE B -21 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP HIS B -20 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP HIS B -19 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP HIS B -18 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP HIS B -17 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP HIS B -16 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP HIS B -15 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP SER B -14 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP SER B -13 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP GLY B -12 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP VAL B -11 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP ASP B -10 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP LEU B -9 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP GLY B -8 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP THR B -7 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP GLU B -6 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP ASN B -5 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP LEU B -4 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP TYR B -3 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP PHE B -2 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP GLN B -1 UNP Q2KB38 EXPRESSION TAG SEQADV 4DUP SER B 0 UNP Q2KB38 EXPRESSION TAG SEQRES 1 A 353 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 353 GLY THR GLU ASN LEU TYR PHE GLN SER MSE SER LEU PRO SEQRES 3 A 353 GLN GLU MSE ARG PHE VAL ASP LEU LYS SER PHE GLY GLY SEQRES 4 A 353 PRO ASP VAL MSE VAL ILE GLY LYS ARG PRO LEU PRO VAL SEQRES 5 A 353 ALA GLY GLU GLY GLU VAL LEU VAL ARG ALA GLU ALA ILE SEQRES 6 A 353 GLY VAL ASN ARG PRO ASP ILE ALA GLN ARG GLN GLY SER SEQRES 7 A 353 TYR PRO PRO PRO LYS ASP ALA SER PRO ILE LEU GLY LEU SEQRES 8 A 353 GLU LEU SER GLY GLU ILE VAL GLY VAL GLY PRO GLY VAL SEQRES 9 A 353 SER GLY TYR ALA VAL GLY ASP LYS VAL CYS GLY LEU ALA SEQRES 10 A 353 ASN GLY GLY ALA TYR ALA GLU TYR CYS LEU LEU PRO ALA SEQRES 11 A 353 GLY GLN ILE LEU PRO PHE PRO LYS GLY TYR ASP ALA VAL SEQRES 12 A 353 LYS ALA ALA ALA LEU PRO GLU THR PHE PHE THR VAL TRP SEQRES 13 A 353 ALA ASN LEU PHE GLN MSE ALA GLY LEU THR GLU GLY GLU SEQRES 14 A 353 SER VAL LEU ILE HIS GLY GLY THR SER GLY ILE GLY THR SEQRES 15 A 353 THR ALA ILE GLN LEU ALA ARG ALA PHE GLY ALA GLU VAL SEQRES 16 A 353 TYR ALA THR ALA GLY SER THR GLY LYS CYS GLU ALA CYS SEQRES 17 A 353 GLU ARG LEU GLY ALA LYS ARG GLY ILE ASN TYR ARG SER SEQRES 18 A 353 GLU ASP PHE ALA ALA VAL ILE LYS ALA GLU THR GLY GLN SEQRES 19 A 353 GLY VAL ASP ILE ILE LEU ASP MSE ILE GLY ALA ALA TYR SEQRES 20 A 353 PHE GLU ARG ASN ILE ALA SER LEU ALA LYS ASP GLY CYS SEQRES 21 A 353 LEU SER ILE ILE ALA PHE LEU GLY GLY ALA VAL ALA GLU SEQRES 22 A 353 LYS VAL ASN LEU SER PRO ILE MSE VAL LYS ARG LEU THR SEQRES 23 A 353 VAL THR GLY SER THR MSE ARG PRO ARG THR ALA GLU GLU SEQRES 24 A 353 LYS ARG ALA ILE ARG ASP ASP LEU LEU SER GLU VAL TRP SEQRES 25 A 353 PRO LEU LEU GLU ALA GLY THR VAL ALA PRO VAL ILE HIS SEQRES 26 A 353 LYS VAL PHE ALA PHE GLU ASP VAL ALA ASP ALA HIS ARG SEQRES 27 A 353 LEU LEU GLU GLU GLY SER HIS VAL GLY LYS VAL MSE LEU SEQRES 28 A 353 THR VAL SEQRES 1 B 353 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 353 GLY THR GLU ASN LEU TYR PHE GLN SER MSE SER LEU PRO SEQRES 3 B 353 GLN GLU MSE ARG PHE VAL ASP LEU LYS SER PHE GLY GLY SEQRES 4 B 353 PRO ASP VAL MSE VAL ILE GLY LYS ARG PRO LEU PRO VAL SEQRES 5 B 353 ALA GLY GLU GLY GLU VAL LEU VAL ARG ALA GLU ALA ILE SEQRES 6 B 353 GLY VAL ASN ARG PRO ASP ILE ALA GLN ARG GLN GLY SER SEQRES 7 B 353 TYR PRO PRO PRO LYS ASP ALA SER PRO ILE LEU GLY LEU SEQRES 8 B 353 GLU LEU SER GLY GLU ILE VAL GLY VAL GLY PRO GLY VAL SEQRES 9 B 353 SER GLY TYR ALA VAL GLY ASP LYS VAL CYS GLY LEU ALA SEQRES 10 B 353 ASN GLY GLY ALA TYR ALA GLU TYR CYS LEU LEU PRO ALA SEQRES 11 B 353 GLY GLN ILE LEU PRO PHE PRO LYS GLY TYR ASP ALA VAL SEQRES 12 B 353 LYS ALA ALA ALA LEU PRO GLU THR PHE PHE THR VAL TRP SEQRES 13 B 353 ALA ASN LEU PHE GLN MSE ALA GLY LEU THR GLU GLY GLU SEQRES 14 B 353 SER VAL LEU ILE HIS GLY GLY THR SER GLY ILE GLY THR SEQRES 15 B 353 THR ALA ILE GLN LEU ALA ARG ALA PHE GLY ALA GLU VAL SEQRES 16 B 353 TYR ALA THR ALA GLY SER THR GLY LYS CYS GLU ALA CYS SEQRES 17 B 353 GLU ARG LEU GLY ALA LYS ARG GLY ILE ASN TYR ARG SER SEQRES 18 B 353 GLU ASP PHE ALA ALA VAL ILE LYS ALA GLU THR GLY GLN SEQRES 19 B 353 GLY VAL ASP ILE ILE LEU ASP MSE ILE GLY ALA ALA TYR SEQRES 20 B 353 PHE GLU ARG ASN ILE ALA SER LEU ALA LYS ASP GLY CYS SEQRES 21 B 353 LEU SER ILE ILE ALA PHE LEU GLY GLY ALA VAL ALA GLU SEQRES 22 B 353 LYS VAL ASN LEU SER PRO ILE MSE VAL LYS ARG LEU THR SEQRES 23 B 353 VAL THR GLY SER THR MSE ARG PRO ARG THR ALA GLU GLU SEQRES 24 B 353 LYS ARG ALA ILE ARG ASP ASP LEU LEU SER GLU VAL TRP SEQRES 25 B 353 PRO LEU LEU GLU ALA GLY THR VAL ALA PRO VAL ILE HIS SEQRES 26 B 353 LYS VAL PHE ALA PHE GLU ASP VAL ALA ASP ALA HIS ARG SEQRES 27 B 353 LEU LEU GLU GLU GLY SER HIS VAL GLY LYS VAL MSE LEU SEQRES 28 B 353 THR VAL MODRES 4DUP MSE A 1 MET SELENOMETHIONINE MODRES 4DUP MSE A 7 MET SELENOMETHIONINE MODRES 4DUP MSE A 21 MET SELENOMETHIONINE MODRES 4DUP MSE A 140 MET SELENOMETHIONINE MODRES 4DUP MSE A 220 MET SELENOMETHIONINE MODRES 4DUP MSE A 259 MET SELENOMETHIONINE MODRES 4DUP MSE A 270 MET SELENOMETHIONINE MODRES 4DUP MSE A 328 MET SELENOMETHIONINE MODRES 4DUP MSE B 7 MET SELENOMETHIONINE MODRES 4DUP MSE B 21 MET SELENOMETHIONINE MODRES 4DUP MSE B 140 MET SELENOMETHIONINE MODRES 4DUP MSE B 220 MET SELENOMETHIONINE MODRES 4DUP MSE B 259 MET SELENOMETHIONINE MODRES 4DUP MSE B 270 MET SELENOMETHIONINE MODRES 4DUP MSE B 328 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 7 8 HET MSE A 21 8 HET MSE A 140 8 HET MSE A 220 8 HET MSE A 259 8 HET MSE A 270 8 HET MSE A 328 8 HET MSE B 7 8 HET MSE B 21 8 HET MSE B 140 8 HET MSE B 220 8 HET MSE B 259 8 HET MSE B 270 8 HET MSE B 328 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 3 HOH *57(H2 O) HELIX 1 1 GLY A 17 ASP A 19 5 3 HELIX 2 2 ASN A 46 GLN A 54 1 9 HELIX 3 3 ASP A 119 ALA A 125 1 7 HELIX 4 4 LEU A 126 PHE A 138 1 13 HELIX 5 5 SER A 156 PHE A 169 1 14 HELIX 6 6 SER A 179 GLY A 190 1 12 HELIX 7 7 ASP A 201 GLY A 211 1 11 HELIX 8 8 GLY A 222 ALA A 224 5 3 HELIX 9 9 TYR A 225 SER A 232 1 8 HELIX 10 10 LEU A 255 LYS A 261 1 7 HELIX 11 11 THR A 274 VAL A 289 1 16 HELIX 12 12 VAL A 289 ALA A 295 1 7 HELIX 13 13 ASP A 310 GLY A 321 1 12 HELIX 14 14 GLY B 17 ASP B 19 5 3 HELIX 15 15 ASN B 46 GLN B 54 1 9 HELIX 16 16 ASP B 119 ALA B 125 1 7 HELIX 17 17 LEU B 126 PHE B 138 1 13 HELIX 18 18 SER B 156 PHE B 169 1 14 HELIX 19 19 CYS B 186 GLY B 190 1 5 HELIX 20 20 ASP B 201 THR B 210 1 10 HELIX 21 21 GLY B 222 ALA B 224 5 3 HELIX 22 22 TYR B 225 SER B 232 1 8 HELIX 23 23 LEU B 255 LYS B 261 1 7 HELIX 24 24 THR B 274 VAL B 289 1 16 HELIX 25 25 VAL B 289 ALA B 295 1 7 HELIX 26 26 ASP B 310 LEU B 318 1 9 SHEET 1 A 2 MSE A 7 LEU A 12 0 SHEET 2 A 2 MSE A 21 ARG A 26 -1 O VAL A 22 N ASP A 11 SHEET 1 B 5 TYR A 103 PRO A 107 0 SHEET 2 B 5 GLU A 35 VAL A 45 -1 N VAL A 38 O CYS A 104 SHEET 3 B 5 GLU A 70 VAL A 78 -1 O GLU A 74 N ARG A 39 SHEET 4 B 5 LYS A 90 LEU A 94 -1 O VAL A 91 N GLY A 73 SHEET 5 B 5 ILE A 111 PRO A 113 -1 O LEU A 112 N CYS A 92 SHEET 1 C 4 TYR A 103 PRO A 107 0 SHEET 2 C 4 GLU A 35 VAL A 45 -1 N VAL A 38 O CYS A 104 SHEET 3 C 4 LYS A 326 THR A 330 -1 O LEU A 329 N ILE A 43 SHEET 4 C 4 ILE A 302 ALA A 307 1 N PHE A 306 O MSE A 328 SHEET 1 D12 ARG A 193 ASN A 196 0 SHEET 2 D12 GLU A 172 ALA A 177 1 N ALA A 175 O ILE A 195 SHEET 3 D12 SER A 148 ILE A 151 1 N VAL A 149 O GLU A 172 SHEET 4 D12 VAL A 214 ASP A 219 1 O LEU A 218 N LEU A 150 SHEET 5 D12 LEU A 233 ILE A 241 1 O SER A 240 N ASP A 219 SHEET 6 D12 THR A 264 GLY A 267 1 O THR A 264 N LEU A 239 SHEET 7 D12 THR B 264 GLY B 267 -1 O VAL B 265 N VAL A 265 SHEET 8 D12 LEU B 233 ILE B 241 1 N LEU B 239 O THR B 264 SHEET 9 D12 VAL B 214 ASP B 219 1 N ILE B 217 O SER B 240 SHEET 10 D12 SER B 148 ILE B 151 1 N LEU B 150 O ILE B 216 SHEET 11 D12 GLU B 172 THR B 176 1 O TYR B 174 N VAL B 149 SHEET 12 D12 ARG B 193 ILE B 195 1 O ILE B 195 N ALA B 175 SHEET 1 E 2 VAL A 249 ASN A 254 0 SHEET 2 E 2 VAL B 249 ASN B 254 -1 O VAL B 253 N ALA A 250 SHEET 1 F 2 GLU B 6 LEU B 12 0 SHEET 2 F 2 MSE B 21 PRO B 27 -1 O VAL B 22 N ASP B 11 SHEET 1 G 5 TYR B 103 PRO B 107 0 SHEET 2 G 5 GLU B 35 VAL B 45 -1 N VAL B 38 O CYS B 104 SHEET 3 G 5 GLU B 70 VAL B 78 -1 O GLU B 74 N ARG B 39 SHEET 4 G 5 LYS B 90 LEU B 94 -1 O VAL B 91 N GLY B 73 SHEET 5 G 5 ILE B 111 PRO B 113 -1 O LEU B 112 N CYS B 92 SHEET 1 H 4 TYR B 103 PRO B 107 0 SHEET 2 H 4 GLU B 35 VAL B 45 -1 N VAL B 38 O CYS B 104 SHEET 3 H 4 VAL B 327 THR B 330 -1 O LEU B 329 N ILE B 43 SHEET 4 H 4 LYS B 304 ALA B 307 1 N PHE B 306 O MSE B 328 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C GLU A 6 N MSE A 7 1555 1555 1.34 LINK C MSE A 7 N ARG A 8 1555 1555 1.33 LINK C VAL A 20 N MSE A 21 1555 1555 1.32 LINK C MSE A 21 N VAL A 22 1555 1555 1.32 LINK C GLN A 139 N MSE A 140 1555 1555 1.33 LINK C MSE A 140 N ALA A 141 1555 1555 1.33 LINK C ASP A 219 N MSE A 220 1555 1555 1.32 LINK C MSE A 220 N ILE A 221 1555 1555 1.34 LINK C ILE A 258 N MSE A 259 1555 1555 1.33 LINK C MSE A 259 N VAL A 260 1555 1555 1.33 LINK C THR A 269 N MSE A 270 1555 1555 1.33 LINK C MSE A 270 N ARG A 271 1555 1555 1.33 LINK C VAL A 327 N MSE A 328 1555 1555 1.34 LINK C MSE A 328 N LEU A 329 1555 1555 1.33 LINK C GLU B 6 N MSE B 7 1555 1555 1.34 LINK C MSE B 7 N ARG B 8 1555 1555 1.34 LINK C VAL B 20 N MSE B 21 1555 1555 1.33 LINK C MSE B 21 N VAL B 22 1555 1555 1.34 LINK C GLN B 139 N MSE B 140 1555 1555 1.34 LINK C MSE B 140 N ALA B 141 1555 1555 1.32 LINK C ASP B 219 N MSE B 220 1555 1555 1.33 LINK C MSE B 220 N ILE B 221 1555 1555 1.32 LINK C ILE B 258 N MSE B 259 1555 1555 1.32 LINK C MSE B 259 N VAL B 260 1555 1555 1.32 LINK C THR B 269 N MSE B 270 1555 1555 1.33 LINK C MSE B 270 N ARG B 271 1555 1555 1.33 LINK C VAL B 327 N MSE B 328 1555 1555 1.33 LINK C MSE B 328 N LEU B 329 1555 1555 1.33 CISPEP 1 GLY B 16 GLY B 17 0 16.81 CRYST1 91.707 142.823 59.989 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010904 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007002 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016670 0.00000 HETATM 1 N MSE A 1 37.064 13.902 61.934 1.00 67.24 N HETATM 2 CA MSE A 1 35.899 14.274 61.067 1.00 77.47 C HETATM 3 C MSE A 1 36.273 15.150 59.888 1.00 75.33 C HETATM 4 O MSE A 1 35.423 15.495 59.071 1.00 70.01 O HETATM 5 CB MSE A 1 34.851 15.015 61.891 1.00 80.26 C HETATM 6 CG MSE A 1 33.487 14.354 61.718 1.00 83.72 C HETATM 7 SE MSE A 1 32.049 15.650 61.300 1.00113.98 SE HETATM 8 CE MSE A 1 32.649 17.243 62.310 1.00 87.57 C