HEADER TRANSFERASE 22-FEB-12 4DUT TITLE THE STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE (NDK) FROM BURKHOLDERIA TITLE 2 THAILANDENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE DIPHOSPHATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NDK, NDP KINASE, NUCLEOSIDE-2-P KINASE; COMPND 5 EC: 2.7.4.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 STRAIN: E264 / ATCC 700388 / DSM 13276 / CIP 106301; SOURCE 5 GENE: NDK, BTH_I2231; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 2 NIAID, NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 4DUT 1 REMARK SEQADV REVDAT 2 30-OCT-13 4DUT 1 JRNL REVDAT 1 07-MAR-12 4DUT 0 JRNL AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, JRNL AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, JRNL AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, JRNL AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, JRNL AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, JRNL AUTH 6 W.C.VAN VOORHIS JRNL TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE JRNL TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. JRNL REF PLOS ONE V. 8 53851 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23382856 JRNL DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 13447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 675 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 800 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2010 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : 0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.370 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.271 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.448 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2059 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1336 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2794 ; 1.371 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3249 ; 0.947 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 268 ; 5.799 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;35.960 ;23.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 314 ;16.818 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;13.066 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 321 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2346 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 421 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1606 9.2029 -2.5870 REMARK 3 T TENSOR REMARK 3 T11: 0.0862 T22: 0.0630 REMARK 3 T33: 0.0374 T12: 0.0298 REMARK 3 T13: -0.0204 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 2.4788 L22: 2.4519 REMARK 3 L33: 2.8739 L12: -0.0912 REMARK 3 L13: -0.3476 L23: -0.2912 REMARK 3 S TENSOR REMARK 3 S11: 0.0645 S12: 0.0758 S13: -0.1710 REMARK 3 S21: -0.1358 S22: 0.0214 S23: -0.1171 REMARK 3 S31: 0.1675 S32: 0.1423 S33: -0.0859 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8714 5.9355 -14.2515 REMARK 3 T TENSOR REMARK 3 T11: 0.4881 T22: 0.3918 REMARK 3 T33: 0.3913 T12: 0.2145 REMARK 3 T13: 0.2388 T23: -0.1503 REMARK 3 L TENSOR REMARK 3 L11: 12.6237 L22: 4.5071 REMARK 3 L33: 0.8503 L12: -1.9076 REMARK 3 L13: -0.1826 L23: -1.7950 REMARK 3 S TENSOR REMARK 3 S11: -0.3209 S12: 0.5540 S13: -1.3064 REMARK 3 S21: -0.5176 S22: -0.0743 S23: -0.4196 REMARK 3 S31: 0.3855 S32: 0.0168 S33: 0.3952 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4441 2.8941 1.8124 REMARK 3 T TENSOR REMARK 3 T11: 0.1302 T22: 0.0595 REMARK 3 T33: 0.1066 T12: 0.0192 REMARK 3 T13: 0.0097 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 2.7495 L22: 2.2067 REMARK 3 L33: 3.6987 L12: 0.3402 REMARK 3 L13: 0.9649 L23: -0.2616 REMARK 3 S TENSOR REMARK 3 S11: 0.1256 S12: -0.1252 S13: -0.3543 REMARK 3 S21: 0.1394 S22: -0.0812 S23: -0.0843 REMARK 3 S31: 0.3107 S32: -0.0367 S33: -0.0444 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 23.5769 4.9994 -1.7469 REMARK 3 T TENSOR REMARK 3 T11: 0.0964 T22: 0.0694 REMARK 3 T33: 0.0541 T12: 0.0487 REMARK 3 T13: -0.0126 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.4484 L22: 4.2570 REMARK 3 L33: 2.6001 L12: 1.2869 REMARK 3 L13: 0.7206 L23: 1.0052 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: 0.1005 S13: -0.2486 REMARK 3 S21: -0.1097 S22: -0.0816 S23: -0.1612 REMARK 3 S31: 0.2898 S32: 0.0875 S33: 0.0351 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 45 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0375 -6.0359 21.8433 REMARK 3 T TENSOR REMARK 3 T11: 0.0820 T22: 0.1105 REMARK 3 T33: 0.1144 T12: 0.0571 REMARK 3 T13: -0.0137 T23: 0.0758 REMARK 3 L TENSOR REMARK 3 L11: 2.8881 L22: 3.4802 REMARK 3 L33: 1.7993 L12: -0.3654 REMARK 3 L13: -0.4787 L23: -0.3790 REMARK 3 S TENSOR REMARK 3 S11: 0.1326 S12: 0.2064 S13: 0.0858 REMARK 3 S21: -0.1141 S22: 0.0072 S23: 0.2554 REMARK 3 S31: -0.1892 S32: -0.2017 S33: -0.1398 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 46 B 63 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6265 -13.8149 8.9790 REMARK 3 T TENSOR REMARK 3 T11: 0.5567 T22: 0.4035 REMARK 3 T33: 0.3798 T12: 0.2653 REMARK 3 T13: 0.1101 T23: 0.0852 REMARK 3 L TENSOR REMARK 3 L11: 2.0120 L22: 1.2852 REMARK 3 L33: 37.1836 L12: 1.0715 REMARK 3 L13: -5.3639 L23: 1.1175 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: 0.0019 S13: 0.4563 REMARK 3 S21: -0.1646 S22: -0.2114 S23: 0.4611 REMARK 3 S31: -0.3029 S32: -0.6008 S33: 0.2456 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 64 B 69 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8823 -5.3124 9.6200 REMARK 3 T TENSOR REMARK 3 T11: 0.6209 T22: 0.2381 REMARK 3 T33: 0.2789 T12: -0.0128 REMARK 3 T13: 0.0456 T23: 0.0931 REMARK 3 L TENSOR REMARK 3 L11: 6.2068 L22: 30.5636 REMARK 3 L33: 10.6164 L12: -11.0827 REMARK 3 L13: 2.9772 L23: 4.6300 REMARK 3 S TENSOR REMARK 3 S11: 1.0091 S12: 0.0593 S13: -0.7102 REMARK 3 S21: -2.1895 S22: -0.2986 S23: 0.8843 REMARK 3 S31: 0.2179 S32: -0.0730 S33: -0.7105 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7508 -9.7921 18.0571 REMARK 3 T TENSOR REMARK 3 T11: 0.0627 T22: 0.1898 REMARK 3 T33: 0.1666 T12: 0.0490 REMARK 3 T13: -0.0385 T23: 0.0932 REMARK 3 L TENSOR REMARK 3 L11: 1.8857 L22: 2.7419 REMARK 3 L33: 1.3832 L12: -1.2150 REMARK 3 L13: 0.0618 L23: -1.2250 REMARK 3 S TENSOR REMARK 3 S11: 0.1381 S12: 0.1422 S13: -0.0221 REMARK 3 S21: -0.1109 S22: 0.1594 S23: 0.4490 REMARK 3 S31: -0.0968 S32: -0.3517 S33: -0.2975 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4DUT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13496 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 38.007 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PDB ENTRY 3PJ9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUTHA.00438.A.A1 PS01186 AT 42.64 REMARK 280 MG/ML, 1.5 M AMMONIUM SULFATE, 0.1 M BIS-TRIS PROPANE, PH 7.0, REMARK 280 CRYOPROTECTANT: 15% ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.48000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.36000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.36000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.24000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.36000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.36000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.72000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.36000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.36000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.24000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.36000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.36000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 84.72000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.48000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 306 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 VAL B 53 REMARK 465 HIS B 54 REMARK 465 ALA B 55 REMARK 465 GLU B 56 REMARK 465 ARG B 57 REMARK 465 PRO B 58 REMARK 465 PHE B 59 REMARK 465 PHE B 60 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 ARG A 57 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 59 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 PHE A 66 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 84 CG CD1 CD2 REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 ILE A 111 CG1 CG2 CD1 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 ASP B 62 CG OD1 OD2 REMARK 470 LEU B 63 CG CD1 CD2 REMARK 470 LEU B 84 CG CD1 CD2 REMARK 470 ARG B 87 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 96 CG CD CE NZ REMARK 470 GLU B 99 CG CD OE1 OE2 REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 ILE B 111 CG1 CG2 CD1 REMARK 470 GLU B 123 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 51 O4 SO4 B 201 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 48 OD1 ASP A 81 4554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 115 -47.86 75.09 REMARK 500 ASP B 62 -2.84 -151.71 REMARK 500 ALA B 115 -55.88 78.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUTHA.00438.A RELATED DB: TARGETTRACK DBREF 4DUT A 1 141 UNP Q2SWE7 NDK_BURTA 1 141 DBREF 4DUT B 1 141 UNP Q2SWE7 NDK_BURTA 1 141 SEQADV 4DUT GLY A -3 UNP Q2SWE7 EXPRESSION TAG SEQADV 4DUT PRO A -2 UNP Q2SWE7 EXPRESSION TAG SEQADV 4DUT GLY A -1 UNP Q2SWE7 EXPRESSION TAG SEQADV 4DUT SER A 0 UNP Q2SWE7 EXPRESSION TAG SEQADV 4DUT GLY B -3 UNP Q2SWE7 EXPRESSION TAG SEQADV 4DUT PRO B -2 UNP Q2SWE7 EXPRESSION TAG SEQADV 4DUT GLY B -1 UNP Q2SWE7 EXPRESSION TAG SEQADV 4DUT SER B 0 UNP Q2SWE7 EXPRESSION TAG SEQRES 1 A 145 GLY PRO GLY SER MET ALA LEU GLU ARG THR LEU SER ILE SEQRES 2 A 145 ILE LYS PRO ASP ALA VAL ALA LYS ASN VAL ILE GLY GLN SEQRES 3 A 145 ILE TYR SER ARG PHE GLU ASN ALA GLY LEU LYS ILE VAL SEQRES 4 A 145 ALA ALA ARG MET ALA HIS LEU SER ARG ALA ASP ALA GLU SEQRES 5 A 145 LYS PHE TYR ALA VAL HIS ALA GLU ARG PRO PHE PHE LYS SEQRES 6 A 145 ASP LEU VAL GLU PHE MET ILE SER GLY PRO VAL MET ILE SEQRES 7 A 145 GLN VAL LEU GLU GLY GLU ASP ALA ILE LEU LYS ASN ARG SEQRES 8 A 145 ASP LEU MET GLY ALA THR ASP PRO LYS LYS ALA GLU LYS SEQRES 9 A 145 GLY THR ILE ARG ALA ASP PHE ALA ASP SER ILE ASP ALA SEQRES 10 A 145 ASN ALA VAL HIS GLY SER ASP ALA PRO GLU THR ALA ARG SEQRES 11 A 145 VAL GLU ILE ALA PHE PHE PHE PRO GLU MET ASN VAL TYR SEQRES 12 A 145 SER ARG SEQRES 1 B 145 GLY PRO GLY SER MET ALA LEU GLU ARG THR LEU SER ILE SEQRES 2 B 145 ILE LYS PRO ASP ALA VAL ALA LYS ASN VAL ILE GLY GLN SEQRES 3 B 145 ILE TYR SER ARG PHE GLU ASN ALA GLY LEU LYS ILE VAL SEQRES 4 B 145 ALA ALA ARG MET ALA HIS LEU SER ARG ALA ASP ALA GLU SEQRES 5 B 145 LYS PHE TYR ALA VAL HIS ALA GLU ARG PRO PHE PHE LYS SEQRES 6 B 145 ASP LEU VAL GLU PHE MET ILE SER GLY PRO VAL MET ILE SEQRES 7 B 145 GLN VAL LEU GLU GLY GLU ASP ALA ILE LEU LYS ASN ARG SEQRES 8 B 145 ASP LEU MET GLY ALA THR ASP PRO LYS LYS ALA GLU LYS SEQRES 9 B 145 GLY THR ILE ARG ALA ASP PHE ALA ASP SER ILE ASP ALA SEQRES 10 B 145 ASN ALA VAL HIS GLY SER ASP ALA PRO GLU THR ALA ARG SEQRES 11 B 145 VAL GLU ILE ALA PHE PHE PHE PRO GLU MET ASN VAL TYR SEQRES 12 B 145 SER ARG HET SO4 A 201 5 HET CL A 202 1 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 4 CL CL 1- FORMUL 8 HOH *57(H2 O) HELIX 1 1 LYS A 11 LYS A 17 1 7 HELIX 2 2 VAL A 19 ALA A 30 1 12 HELIX 3 3 SER A 43 TYR A 51 1 9 HELIX 4 4 ALA A 52 ALA A 55 5 4 HELIX 5 5 PHE A 59 SER A 69 1 11 HELIX 6 6 ASP A 81 GLY A 91 1 11 HELIX 7 7 THR A 102 ALA A 108 1 7 HELIX 8 8 ALA A 121 PHE A 133 1 13 HELIX 9 9 PRO A 134 VAL A 138 5 5 HELIX 10 10 LYS B 11 LYS B 17 1 7 HELIX 11 11 VAL B 19 ALA B 30 1 12 HELIX 12 12 SER B 43 TYR B 51 1 9 HELIX 13 13 ASP B 62 ILE B 68 1 7 HELIX 14 14 ASP B 81 GLY B 91 1 11 HELIX 15 15 THR B 102 ALA B 108 1 7 HELIX 16 16 ALA B 121 PHE B 133 1 13 HELIX 17 17 PRO B 134 VAL B 138 5 5 SHEET 1 A 4 LYS A 33 ALA A 40 0 SHEET 2 A 4 VAL A 72 GLU A 80 -1 O ILE A 74 N ARG A 38 SHEET 3 A 4 LEU A 3 ILE A 10 -1 N SER A 8 O GLN A 75 SHEET 4 A 4 VAL A 116 GLY A 118 -1 O HIS A 117 N ILE A 9 SHEET 1 B 4 LYS B 33 ALA B 40 0 SHEET 2 B 4 VAL B 72 GLY B 79 -1 O ILE B 74 N ARG B 38 SHEET 3 B 4 GLU B 4 ILE B 10 -1 N ILE B 10 O MET B 73 SHEET 4 B 4 VAL B 116 GLY B 118 -1 O HIS B 117 N ILE B 9 SITE 1 AC1 6 LYS A 11 TYR A 51 ARG A 104 ASN A 114 SITE 2 AC1 6 HIS A 117 HOH A 319 SITE 1 AC2 1 ARG A 44 SITE 1 AC3 7 LYS B 11 TYR B 51 ARG B 104 ASN B 114 SITE 2 AC3 7 VAL B 116 HIS B 117 HOH B 307 SITE 1 AC4 5 ARG A 38 ASN A 137 ARG B 38 ASN B 137 SITE 2 AC4 5 HOH B 304 SITE 1 AC5 3 HIS A 41 TYR A 139 LYS B 49 CRYST1 80.720 80.720 112.960 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012389 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012389 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008853 0.00000