HEADER HYDROLASE 24-FEB-12 4DW8 TITLE CRYSTAL STRUCTURE OF A HALOACID DEHALOGENASE-LIKE HYDROLASE (TARGET TITLE 2 EFI-900331) FROM BACTEROIDES THETAIOTAOMICRON WITH BOUND NA CRYSTAL TITLE 3 FORM I COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOACID DEHALOGENASE-LIKE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.8.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482; SOURCE 5 GENE: BT_3352; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS HAD, PUTATIVE PHOSPHATASE, ENZYME FUNCTION INITIATIVE, EFI, KEYWDS 2 STRUCTURAL GENOMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,S.R.WASSERMAN,L.L.MORISCO,S.SOJITRA,K.N.ALLEN,D.DUNAWAY- AUTHOR 2 MARIANO,H.J.IMKER,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 3 (EFI) REVDAT 3 13-SEP-23 4DW8 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4DW8 1 REMARK REVDAT 1 28-MAR-12 4DW8 0 JRNL AUTH M.W.VETTING,S.R.WASSERMAN,L.L.MORISCO,S.SOJITRA,K.N.ALLEN, JRNL AUTH 2 D.DUNAWAY-MARIANO,H.J.IMKER,J.A.GERLT,S.C.ALMO, JRNL AUTH 3 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF A HALOACID DEHALOGENASE-LIKE HYDROLASE JRNL TITL 2 (TARGET EFI-900331) FROM BACTEROIDES THETAIOTAOMICRON WITH JRNL TITL 3 BOUND NA CRYSTAL FORM I JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 40830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.670 REMARK 3 FREE R VALUE TEST SET COUNT : 1906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.2829 - 3.6132 0.91 2857 139 0.1789 0.2049 REMARK 3 2 3.6132 - 2.8705 1.00 2973 144 0.1824 0.2428 REMARK 3 3 2.8705 - 2.5084 0.99 2922 143 0.1931 0.1956 REMARK 3 4 2.5084 - 2.2794 0.99 2912 143 0.1843 0.2096 REMARK 3 5 2.2794 - 2.1162 0.99 2900 142 0.1728 0.1823 REMARK 3 6 2.1162 - 1.9915 0.99 2881 141 0.1779 0.2055 REMARK 3 7 1.9915 - 1.8919 0.97 2835 138 0.1750 0.2080 REMARK 3 8 1.8919 - 1.8096 0.95 2757 134 0.1673 0.2116 REMARK 3 9 1.8096 - 1.7400 0.94 2705 131 0.1697 0.1878 REMARK 3 10 1.7400 - 1.6799 0.94 2715 137 0.1679 0.2062 REMARK 3 11 1.6799 - 1.6274 0.93 2672 136 0.1790 0.2072 REMARK 3 12 1.6274 - 1.5809 0.92 2648 123 0.1872 0.2318 REMARK 3 13 1.5809 - 1.5393 0.91 2632 129 0.2040 0.2484 REMARK 3 14 1.5393 - 1.5020 0.88 2515 126 0.2124 0.2413 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 45.69 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.92750 REMARK 3 B22 (A**2) : -2.05900 REMARK 3 B33 (A**2) : -2.86840 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2193 REMARK 3 ANGLE : 1.455 2987 REMARK 3 CHIRALITY : 0.100 347 REMARK 3 PLANARITY : 0.007 388 REMARK 3 DIHEDRAL : 11.848 840 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:35) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4544 -19.1511 -30.1096 REMARK 3 T TENSOR REMARK 3 T11: 0.1991 T22: 0.1507 REMARK 3 T33: 0.1160 T12: 0.0168 REMARK 3 T13: -0.0052 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 4.2446 L22: 3.9512 REMARK 3 L33: 3.8467 L12: 0.0162 REMARK 3 L13: 0.9076 L23: 0.9309 REMARK 3 S TENSOR REMARK 3 S11: 0.0505 S12: 0.3724 S13: -0.1197 REMARK 3 S21: -0.2665 S22: 0.0548 S23: 0.1911 REMARK 3 S31: 0.2568 S32: 0.2060 S33: -0.0711 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 36:95) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4262 -21.4944 -17.8543 REMARK 3 T TENSOR REMARK 3 T11: 0.1209 T22: 0.1846 REMARK 3 T33: 0.1384 T12: 0.0258 REMARK 3 T13: 0.0078 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.4311 L22: 1.3868 REMARK 3 L33: 3.1972 L12: 0.0284 REMARK 3 L13: 0.5060 L23: -1.0946 REMARK 3 S TENSOR REMARK 3 S11: 0.1638 S12: 0.1571 S13: 0.0402 REMARK 3 S21: -0.1384 S22: -0.0462 S23: -0.1708 REMARK 3 S31: 0.0686 S32: 0.5348 S33: -0.1159 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 96:190) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4325 -31.6540 -2.8635 REMARK 3 T TENSOR REMARK 3 T11: 0.0781 T22: 0.1127 REMARK 3 T33: 0.1036 T12: 0.0017 REMARK 3 T13: -0.0276 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.8997 L22: 3.6253 REMARK 3 L33: 2.3197 L12: 0.5638 REMARK 3 L13: -0.3652 L23: 0.6744 REMARK 3 S TENSOR REMARK 3 S11: 0.0941 S12: -0.1874 S13: -0.0015 REMARK 3 S21: 0.1989 S22: -0.1425 S23: 0.0573 REMARK 3 S31: 0.1412 S32: 0.0373 S33: 0.0486 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 191:214) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7799 -8.4382 -15.8642 REMARK 3 T TENSOR REMARK 3 T11: 0.1746 T22: 0.1540 REMARK 3 T33: 0.2545 T12: -0.0474 REMARK 3 T13: -0.0466 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.9318 L22: 2.7536 REMARK 3 L33: 5.1480 L12: 0.7065 REMARK 3 L13: -0.2886 L23: -2.4998 REMARK 3 S TENSOR REMARK 3 S11: -0.0958 S12: 0.0904 S13: 0.3923 REMARK 3 S21: 0.2503 S22: -0.0891 S23: -0.2535 REMARK 3 S31: -0.8048 S32: 0.3064 S33: 0.0365 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 215:267) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7225 -11.4096 -24.1590 REMARK 3 T TENSOR REMARK 3 T11: 0.1647 T22: 0.1143 REMARK 3 T33: 0.1462 T12: 0.0083 REMARK 3 T13: 0.0113 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 2.8162 L22: 3.9501 REMARK 3 L33: 3.3696 L12: -1.1035 REMARK 3 L13: 1.1904 L23: 0.6178 REMARK 3 S TENSOR REMARK 3 S11: -0.0885 S12: -0.1360 S13: -0.0103 REMARK 3 S21: 0.2330 S22: 0.0441 S23: 0.2090 REMARK 3 S31: 0.0848 S32: -0.1969 S33: 0.0383 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DW8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42541 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3NIW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 10 MM HEPES, PH 7.8, REMARK 280 150 MM SODIUM CHLORIDE, 10% GLYCEROL, 5 MM MAGNESIUM, RESERVOIR REMARK 280 SOLUTION: 20% PEG4000, 100 MM SODIUM ACETATE, PH 4.75, 200 MM REMARK 280 AMMONIUM ACETATE, 12% ETHYLENE GLYCOL, CRYOPROTECTANT: RESERVOIR REMARK 280 SOLUTION + 10% GLYCEROL + 10% ETHYLENE GLYCOL + 200 MM MAGNESIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.83450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.28600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.56650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.28600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.83450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.56650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 ASN A 268 REMARK 465 VAL A 269 REMARK 465 GLU A 270 REMARK 465 GLY A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O UNL A 301 O UNL A 302 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 10 -78.14 -98.55 REMARK 500 THR A 13 -80.86 -133.49 REMARK 500 ASP A 219 -33.25 -134.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD2 REMARK 620 2 ASP A 11 O 111.3 REMARK 620 3 ASP A 219 OD2 97.1 85.2 REMARK 620 4 HOH A 488 O 162.2 86.3 86.5 REMARK 620 5 HOH A 504 O 75.6 101.0 171.8 99.2 REMARK 620 6 HOH A 528 O 76.8 171.9 93.5 85.6 81.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DWO RELATED DB: PDB REMARK 900 RELATED ID: EFI-900331 RELATED DB: TARGETTRACK DBREF 4DW8 A 2 269 UNP Q8A2F3 Q8A2F3_BACTN 2 269 SEQADV 4DW8 MET A -1 UNP Q8A2F3 EXPRESSION TAG SEQADV 4DW8 SER A 0 UNP Q8A2F3 EXPRESSION TAG SEQADV 4DW8 LEU A 1 UNP Q8A2F3 EXPRESSION TAG SEQADV 4DW8 GLU A 270 UNP Q8A2F3 EXPRESSION TAG SEQADV 4DW8 GLY A 271 UNP Q8A2F3 EXPRESSION TAG SEQADV 4DW8 HIS A 272 UNP Q8A2F3 EXPRESSION TAG SEQADV 4DW8 HIS A 273 UNP Q8A2F3 EXPRESSION TAG SEQADV 4DW8 HIS A 274 UNP Q8A2F3 EXPRESSION TAG SEQADV 4DW8 HIS A 275 UNP Q8A2F3 EXPRESSION TAG SEQADV 4DW8 HIS A 276 UNP Q8A2F3 EXPRESSION TAG SEQADV 4DW8 HIS A 277 UNP Q8A2F3 EXPRESSION TAG SEQRES 1 A 279 MET SER LEU LYS TYR LYS LEU ILE VAL LEU ASP LEU ASP SEQRES 2 A 279 GLY THR LEU THR ASN SER LYS LYS GLU ILE SER SER ARG SEQRES 3 A 279 ASN ARG GLU THR LEU ILE ARG ILE GLN GLU GLN GLY ILE SEQRES 4 A 279 ARG LEU VAL LEU ALA SER GLY ARG PRO THR TYR GLY ILE SEQRES 5 A 279 VAL PRO LEU ALA ASN GLU LEU ARG MET ASN GLU PHE GLY SEQRES 6 A 279 GLY PHE ILE LEU SER TYR ASN GLY GLY GLU ILE ILE ASN SEQRES 7 A 279 TRP GLU SER LYS GLU MET MET TYR GLU ASN VAL LEU PRO SEQRES 8 A 279 ASN GLU VAL VAL PRO VAL LEU TYR GLU CYS ALA ARG THR SEQRES 9 A 279 ASN HIS LEU SER ILE LEU THR TYR ASP GLY ALA GLU ILE SEQRES 10 A 279 VAL THR GLU ASN SER LEU ASP PRO TYR VAL GLN LYS GLU SEQRES 11 A 279 ALA PHE LEU ASN LYS MET ALA ILE ARG GLU THR ASN ASP SEQRES 12 A 279 PHE LEU THR ASP ILE THR LEU PRO VAL ALA LYS CYS LEU SEQRES 13 A 279 ILE VAL GLY ASP ALA GLY LYS LEU ILE PRO VAL GLU SER SEQRES 14 A 279 GLU LEU CYS ILE ARG LEU GLN GLY LYS ILE ASN VAL PHE SEQRES 15 A 279 ARG SER GLU PRO TYR PHE LEU GLU LEU VAL PRO GLN GLY SEQRES 16 A 279 ILE ASP LYS ALA LEU SER LEU SER VAL LEU LEU GLU ASN SEQRES 17 A 279 ILE GLY MET THR ARG GLU GLU VAL ILE ALA ILE GLY ASP SEQRES 18 A 279 GLY TYR ASN ASP LEU SER MET ILE LYS PHE ALA GLY MET SEQRES 19 A 279 GLY VAL ALA MET GLY ASN ALA GLN GLU PRO VAL LYS LYS SEQRES 20 A 279 ALA ALA ASP TYR ILE THR LEU THR ASN ASP GLU ASP GLY SEQRES 21 A 279 VAL ALA GLU ALA ILE GLU ARG ILE PHE ASN VAL GLU GLY SEQRES 22 A 279 HIS HIS HIS HIS HIS HIS HET UNL A 301 1 HET UNL A 302 1 HET UNL A 303 1 HET NA A 304 1 HETNAM UNL UNKNOWN LIGAND HETNAM NA SODIUM ION FORMUL 5 NA NA 1+ FORMUL 6 HOH *232(H2 O) HELIX 1 1 SER A 22 GLN A 35 1 14 HELIX 2 2 PRO A 46 LEU A 57 1 12 HELIX 3 3 ARG A 58 PHE A 62 5 5 HELIX 4 4 TYR A 69 GLY A 71 5 3 HELIX 5 5 PRO A 89 GLU A 91 5 3 HELIX 6 6 VAL A 92 ASN A 103 1 12 HELIX 7 7 ASP A 122 LYS A 133 1 12 HELIX 8 8 ASP A 141 ILE A 146 1 6 HELIX 9 9 ASP A 158 LEU A 173 1 16 HELIX 10 10 ASP A 195 GLY A 208 1 14 HELIX 11 11 THR A 210 GLU A 212 5 3 HELIX 12 12 GLY A 220 ASN A 222 5 3 HELIX 13 13 ASP A 223 ALA A 230 1 8 HELIX 14 14 GLN A 240 ALA A 247 1 8 HELIX 15 15 THR A 253 GLU A 256 5 4 HELIX 16 16 ASP A 257 PHE A 267 1 11 SHEET 1 A 8 MET A 82 GLU A 85 0 SHEET 2 A 8 GLU A 73 ASN A 76 -1 N ILE A 74 O MET A 83 SHEET 3 A 8 PHE A 65 SER A 68 -1 N ILE A 66 O ILE A 75 SHEET 4 A 8 ARG A 38 ALA A 42 1 N LEU A 41 O LEU A 67 SHEET 5 A 8 LEU A 5 LEU A 8 1 N LEU A 8 O VAL A 40 SHEET 6 A 8 VAL A 214 GLY A 218 1 O ILE A 215 N VAL A 7 SHEET 7 A 8 MET A 232 ALA A 235 1 O VAL A 234 N ALA A 216 SHEET 8 A 8 TYR A 249 ILE A 250 1 O TYR A 249 N ALA A 235 SHEET 1 B 6 ALA A 135 GLU A 138 0 SHEET 2 B 6 GLU A 114 THR A 117 1 N ILE A 115 O ARG A 137 SHEET 3 B 6 SER A 106 ASP A 111 -1 N ASP A 111 O GLU A 114 SHEET 4 B 6 CYS A 153 VAL A 156 -1 O LEU A 154 N LEU A 108 SHEET 5 B 6 PHE A 186 VAL A 190 -1 O LEU A 187 N ILE A 155 SHEET 6 B 6 ASN A 178 ARG A 181 -1 N PHE A 180 O GLU A 188 LINK OD2 ASP A 9 NA NA A 304 1555 1555 2.40 LINK O ASP A 11 NA NA A 304 1555 1555 2.28 LINK OD2 ASP A 219 NA NA A 304 1555 1555 2.38 LINK NA NA A 304 O HOH A 488 1555 1555 2.43 LINK NA NA A 304 O HOH A 504 1555 1555 2.62 LINK NA NA A 304 O HOH A 528 1555 1555 2.41 CISPEP 1 LEU A 148 PRO A 149 0 0.29 SITE 1 AC1 6 ASP A 9 ASP A 11 ASP A 219 HOH A 488 SITE 2 AC1 6 HOH A 504 HOH A 528 CRYST1 43.669 73.133 82.572 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022900 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012111 0.00000