HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-FEB-12 4DWE TITLE CRYSTAL STRUCTURE OF A PUTATIVE POLYSACCHARIDE DEACETYLASE TITLE 2 (BACOVA_03992) FROM BACTEROIDES OVATUS ATCC 8483 AT 2.01 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 411476; SOURCE 4 STRAIN: ATCC 8483; SOURCE 5 GENE: BACOVA_03992; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS HYPOTHETICAL PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, UNKNOWN FUNCTION, CSAP EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 24-JAN-18 4DWE 1 JRNL REVDAT 3 15-NOV-17 4DWE 1 REMARK REVDAT 2 24-DEC-14 4DWE 1 TITLE REVDAT 1 02-MAY-12 4DWE 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (BACOVA_03992) JRNL TITL 2 FROM BACTEROIDES OVATUS ATCC 8483 AT 2.01 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 32268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1596 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2048 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3745 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 426 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.50000 REMARK 3 B22 (A**2) : -1.80000 REMARK 3 B33 (A**2) : 0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.127 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3892 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2631 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5268 ; 1.770 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6401 ; 1.371 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 465 ; 7.203 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 202 ;37.675 ;24.802 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 658 ;12.441 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.572 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 558 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4333 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 809 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 499 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9910 1.1550 7.2860 REMARK 3 T TENSOR REMARK 3 T11: 0.0026 T22: 0.0289 REMARK 3 T33: 0.0187 T12: -0.0070 REMARK 3 T13: 0.0039 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.4199 L22: 0.3061 REMARK 3 L33: 0.3516 L12: -0.1138 REMARK 3 L13: 0.0504 L23: -0.0220 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: -0.0160 S13: 0.0034 REMARK 3 S21: -0.0060 S22: 0.0191 S23: 0.0067 REMARK 3 S31: 0.0020 S32: -0.0194 S33: -0.0141 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 6. GLYCEROL (GOL) MOLECULES FROM THE REMARK 3 CRYSTALLIZATION SOLUTION ARE MODELED. REMARK 4 REMARK 4 4DWE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070866. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.9796,0.97925 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE DECEMBER 29, 2011 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32317 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 29.571 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17M SODIUM ACETATE, 25.5% REMARK 280 POLYETHYLENE GLYCOL 4000, 15.0% GLYCEROL, 0.1M TRIS REMARK 280 HYDROCHLORIDE PH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.38100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.71200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.48750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.71200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.38100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.48750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY A 21 REMARK 465 CYS A 22 REMARK 465 ILE A 23 REMARK 465 ARG A 24 REMARK 465 LYS A 25 REMARK 465 LEU A 26 REMARK 465 ASN A 27 REMARK 465 LEU A 28 REMARK 465 TYR A 29 REMARK 465 GLN A 30 REMARK 465 GLY A 31 REMARK 465 ASP A 32 REMARK 465 LYS A 33 REMARK 465 ASP A 34 REMARK 465 GLU A 35 REMARK 465 ASP A 36 REMARK 465 GLU A 37 REMARK 465 ASN A 38 REMARK 465 LYS A 39 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 304 CG CD OE1 OE2 REMARK 470 LYS A 381 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 457 CG HIS A 457 CD2 0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 237 CG - SE - CE ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG A 356 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 179 85.50 -163.71 REMARK 500 HIS A 213 -131.77 -146.64 REMARK 500 LYS A 222 53.23 -90.79 REMARK 500 HIS A 337 -107.75 -103.53 REMARK 500 LYS A 441 -124.03 48.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-416920 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 21-499 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4DWE A 21 499 UNP A7M1K9 A7M1K9_BACOV 21 499 SEQADV 4DWE GLY A 0 UNP A7M1K9 LEADER SEQUENCE SEQRES 1 A 480 GLY GLY CYS ILE ARG LYS LEU ASN LEU TYR GLN GLY ASP SEQRES 2 A 480 LYS ASP GLU ASP GLU ASN LYS ASP ASN GLY LYS ARG ARG SEQRES 3 A 480 ASP VAL ILE CYS GLU THR GLU PHE ILE TYR PRO PHE GLY SEQRES 4 A 480 ASN GLU THR ALA ASP LYS GLU ILE GLU ILE THR ILE HIS SEQRES 5 A 480 LEU LYS ALA ASP ARG GLN VAL GLY TYR LEU TYR THR GLU SEQRES 6 A 480 ILE PRO THR LEU LYS TYR ASN LYS ASP TRP LEU PHE LEU SEQRES 7 A 480 MSE THR GLN ASP ASP CYS MSE HIS SER ALA PHE SER TYR SEQRES 8 A 480 THR TRP ALA ALA ILE HIS GLY LYS PRO LEU SER TYR ILE SEQRES 9 A 480 TYR TYR CYS ASP LEU ALA HIS LEU GLN ASN GLY ASP LEU SEQRES 10 A 480 PRO PRO ASP TYR TYR SER LEU GLY LYS THR LEU ALA THR SEQRES 11 A 480 THR ASN GLY THR GLY GLN GLU VAL ARG PHE SER PHE GLY SEQRES 12 A 480 THR THR VAL ALA ALA ASP ASP ASP LEU MSE ASN THR GLN SEQRES 13 A 480 THR TRP VAL GLN ASN GLY TYR THR ARG ASP TYR PHE ARG SEQRES 14 A 480 PHE TYR LYS LYS THR MSE LEU VAL TRP GLY ASN LEU GLN SEQRES 15 A 480 GLU MSE MSE ASN TYR GLY VAL SER ILE ALA PHE HIS ASP SEQRES 16 A 480 LEU ASN LEU PRO ASP GLU ASP LYS THR GLU ASP LYS LEU SEQRES 17 A 480 LEU ALA GLN PHE PRO VAL ALA GLN SER MSE ILE ARG GLU SEQRES 18 A 480 LYS LEU ASN ASN ARG THR CYS LYS MSE LEU ALA GLU PRO SEQRES 19 A 480 ASN GLY ASP LYS ASN TYR ILE LYS ALA ALA LEU ARG TYR SEQRES 20 A 480 ASP LYS ILE ARG THR LEU CYS ALA GLN SER GLY ALA THR SEQRES 21 A 480 LYS LEU TYR PRO PHE GLN GLU ASN GLY ASP ILE GLU GLN SEQRES 22 A 480 VAL VAL ILE GLU ARG ALA PHE TYR ASP PRO PRO GLU GLY SEQRES 23 A 480 SER GLY LEU THR ASN PRO ASP MSE ILE LYS ALA ALA ILE SEQRES 24 A 480 LEU LYS GLU MSE GLU ASN PRO LYS GLU GLU ARG ALA ALA SEQRES 25 A 480 ILE SER ILE GLY ALA HIS ASN THR ASP THR GLY TRP VAL SEQRES 26 A 480 ASN PHE LEU GLU TRP LEU ASN ASP THR TYR GLY ARG ASP SEQRES 27 A 480 GLY ASP ASP SER MSE TRP PHE THR ASN GLN GLU GLU TYR SEQRES 28 A 480 TYR GLU TYR TYR TYR TYR ARG LEU HIS SER LYS PRO GLU SEQRES 29 A 480 ILE LYS GLN VAL ASN THR HIS THR TRP LYS LEU THR LEU SEQRES 30 A 480 ASN LEU ASN GLY GLU ASP SER ALA PRO PHE TYR TYR PRO SEQRES 31 A 480 SER VAL THR VAL ASN ILE PHE GLY LEU LYS MSE GLY ASP SEQRES 32 A 480 ILE GLU SER ILE LYS SER ASN GLU ASP VAL THR GLY LEU SEQRES 33 A 480 SER TYR GLY ASP HIS LYS ASP PHE PHE MSE LEU ASN ILE SEQRES 34 A 480 ASP CYS ARG LYS TYR LEU ALA GLU HIS ALA GLU ASN PHE SEQRES 35 A 480 VAL LYS ARG TYR GLU ALA ASN PRO THR ASP VAL SER ALA SEQRES 36 A 480 LYS ALA ASP ALA ASN TYR PHE VAL ASN MSE LEU LYS ASP SEQRES 37 A 480 SER ASP LYS LYS THR GLU LEU LYS LYS ARG ILE GLU MODRES 4DWE MSE A 98 MET SELENOMETHIONINE MODRES 4DWE MSE A 104 MET SELENOMETHIONINE MODRES 4DWE MSE A 172 MET SELENOMETHIONINE MODRES 4DWE MSE A 194 MET SELENOMETHIONINE MODRES 4DWE MSE A 203 MET SELENOMETHIONINE MODRES 4DWE MSE A 204 MET SELENOMETHIONINE MODRES 4DWE MSE A 237 MET SELENOMETHIONINE MODRES 4DWE MSE A 249 MET SELENOMETHIONINE MODRES 4DWE MSE A 313 MET SELENOMETHIONINE MODRES 4DWE MSE A 322 MET SELENOMETHIONINE MODRES 4DWE MSE A 362 MET SELENOMETHIONINE MODRES 4DWE MSE A 420 MET SELENOMETHIONINE MODRES 4DWE MSE A 445 MET SELENOMETHIONINE MODRES 4DWE MSE A 484 MET SELENOMETHIONINE HET MSE A 98 8 HET MSE A 104 8 HET MSE A 172 8 HET MSE A 194 8 HET MSE A 203 8 HET MSE A 204 8 HET MSE A 237 8 HET MSE A 249 8 HET MSE A 313 8 HET MSE A 322 8 HET MSE A 362 8 HET MSE A 420 8 HET MSE A 445 8 HET MSE A 484 8 HET GOL A 500 6 HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 2 GOL 7(C3 H8 O3) FORMUL 9 HOH *426(H2 O) HELIX 1 1 PRO A 56 GLU A 60 5 5 HELIX 2 2 LEU A 88 LYS A 92 5 5 HELIX 3 3 MSE A 104 TYR A 110 1 7 HELIX 4 4 TYR A 110 HIS A 116 1 7 HELIX 5 5 ASP A 127 GLY A 134 1 8 HELIX 6 6 ASP A 169 THR A 174 5 6 HELIX 7 7 TYR A 186 TYR A 190 5 5 HELIX 8 8 VAL A 196 ASN A 205 1 10 HELIX 9 9 PRO A 218 LYS A 222 5 5 HELIX 10 10 THR A 223 LEU A 242 1 20 HELIX 11 11 ASP A 256 LEU A 264 1 9 HELIX 12 12 THR A 309 GLU A 323 1 15 HELIX 13 13 ASN A 324 ARG A 329 5 6 HELIX 14 14 ASP A 340 TYR A 354 1 15 HELIX 15 15 ASN A 366 SER A 380 1 15 HELIX 16 16 LYS A 419 GLY A 421 5 3 HELIX 17 17 TYR A 453 ASN A 468 1 16 HELIX 18 18 ASP A 471 ASN A 483 1 13 HELIX 19 19 SER A 488 ILE A 498 1 11 SHEET 1 A 2 ARG A 45 VAL A 47 0 SHEET 2 A 2 THR A 176 VAL A 178 -1 O THR A 176 N VAL A 47 SHEET 1 B 4 GLU A 383 ASN A 388 0 SHEET 2 B 4 THR A 391 ASN A 399 -1 O LYS A 393 N LYS A 385 SHEET 3 B 4 ASP A 63 LEU A 72 -1 N ILE A 68 O LEU A 394 SHEET 4 B 4 ILE A 423 SER A 428 -1 O SER A 425 N HIS A 71 SHEET 1 C 4 TYR A 82 GLU A 84 0 SHEET 2 C 4 SER A 410 PHE A 416 -1 O ASN A 414 N GLU A 84 SHEET 3 C 4 PHE A 443 ASP A 449 -1 O PHE A 444 N ILE A 415 SHEET 4 C 4 GLY A 434 HIS A 440 -1 N SER A 436 O ASN A 447 SHEET 1 D 4 SER A 209 ALA A 211 0 SHEET 2 D 4 GLY A 162 THR A 164 1 N THR A 163 O SER A 209 SHEET 3 D 4 TRP A 94 GLN A 100 1 N GLN A 100 O GLY A 162 SHEET 4 D 4 ILE A 332 ALA A 336 1 O ILE A 332 N LEU A 97 SHEET 1 E 4 SER A 209 ALA A 211 0 SHEET 2 E 4 GLY A 162 THR A 164 1 N THR A 163 O SER A 209 SHEET 3 E 4 TRP A 94 GLN A 100 1 N GLN A 100 O GLY A 162 SHEET 4 E 4 MSE A 362 THR A 365 1 O TRP A 363 N PHE A 96 SHEET 1 F 2 ALA A 148 THR A 150 0 SHEET 2 F 2 GLU A 156 ARG A 158 -1 O VAL A 157 N THR A 149 SHEET 1 G 3 MSE A 249 ALA A 251 0 SHEET 2 G 3 THR A 271 ALA A 274 1 O CYS A 273 N LEU A 250 SHEET 3 G 3 VAL A 293 GLU A 296 1 O ILE A 295 N LEU A 272 LINK C LEU A 97 N MSE A 98 1555 1555 1.33 LINK C MSE A 98 N THR A 99 1555 1555 1.34 LINK C CYS A 103 N MSE A 104 1555 1555 1.33 LINK C MSE A 104 N HIS A 105 1555 1555 1.32 LINK C LEU A 171 N MSE A 172 1555 1555 1.34 LINK C MSE A 172 N ASN A 173 1555 1555 1.34 LINK C THR A 193 N MSE A 194 1555 1555 1.33 LINK C MSE A 194 N LEU A 195 1555 1555 1.33 LINK C GLU A 202 N MSE A 203 1555 1555 1.32 LINK C MSE A 203 N MSE A 204 1555 1555 1.34 LINK C MSE A 204 N ASN A 205 1555 1555 1.33 LINK C SER A 236 N MSE A 237 1555 1555 1.33 LINK C MSE A 237 N ILE A 238 1555 1555 1.33 LINK C LYS A 248 N MSE A 249 1555 1555 1.34 LINK C MSE A 249 N LEU A 250 1555 1555 1.34 LINK C ASP A 312 N MSE A 313 1555 1555 1.34 LINK C MSE A 313 N ILE A 314 1555 1555 1.33 LINK C GLU A 321 N MSE A 322 1555 1555 1.33 LINK C MSE A 322 N GLU A 323 1555 1555 1.33 LINK C SER A 361 N MSE A 362 1555 1555 1.33 LINK C MSE A 362 N TRP A 363 1555 1555 1.34 LINK C LYS A 419 N MSE A 420 1555 1555 1.34 LINK C MSE A 420 N GLY A 421 1555 1555 1.34 LINK C PHE A 444 N MSE A 445 1555 1555 1.33 LINK C MSE A 445 N LEU A 446 1555 1555 1.33 LINK C ASN A 483 N MSE A 484 1555 1555 1.33 LINK C MSE A 484 N LEU A 485 1555 1555 1.32 SITE 1 AC1 8 ASP A 101 HIS A 213 ASN A 254 GLN A 275 SITE 2 AC1 8 HIS A 337 HOH A 801 HOH A 932 HOH A 954 SITE 1 AC2 7 ASP A 93 ARG A 329 TYR A 354 ASP A 359 SITE 2 AC2 7 SER A 361 HOH A 822 HOH A 937 SITE 1 AC3 7 PRO A 56 PHE A 57 GLY A 58 ASN A 59 SITE 2 AC3 7 TYR A 190 ASN A 243 ASN A 244 SITE 1 AC4 11 TYR A 80 LEU A 81 GLY A 277 ALA A 278 SITE 2 AC4 11 THR A 279 VAL A 293 VAL A 294 ILE A 384 SITE 3 AC4 11 HOH A 748 HOH A 762 HOH A 793 SITE 1 AC5 7 TRP A 112 LYS A 118 GLU A 202 TYR A 206 SITE 2 AC5 7 ARG A 464 ASP A 471 HOH A 926 SITE 1 AC6 5 THR A 353 ASP A 359 THR A 470 GOL A 506 SITE 2 AC6 5 HOH A 944 SITE 1 AC7 6 LEU A 131 GLN A 132 GLY A 134 ASN A 468 SITE 2 AC7 6 ASP A 471 GOL A 505 CRYST1 68.762 72.975 95.424 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014543 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013703 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010480 0.00000