HEADER TRANSFERASE/TRANSFERASE INHIBITOR 24-FEB-12 4DWG TITLE CRYSTAL STRUCTURE OF TRYPANOSOME CRUZI FARNESYL DIPHOSPHATE SYNTHASE TITLE 2 IN COMPLEX WITH [2-(N-HEPTYLAMINO)ETHANE-1,1-DIYL]BISPHOSPHONIC ACID TITLE 3 AND MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FPPS, FARNESYL DIPHOSPHATE SYNTHASE; COMPND 5 EC: 2.5.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 3 ORGANISM_TAXID: 5693; SOURCE 4 GENE: FPPS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GERANYL TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.ARIPIRALA,L.M.AMZEL,S.B.GABELLI REVDAT 2 13-SEP-23 4DWG 1 REMARK LINK REVDAT 1 16-JAN-13 4DWG 0 JRNL AUTH S.ARIPIRALA,S.H.SZAJNMAN,J.JAKONCIC,J.B.RODRIGUEZ,R.DOCAMPO, JRNL AUTH 2 S.B.GABELLI,L.M.AMZEL JRNL TITL DESIGN, SYNTHESIS, CALORIMETRY, AND CRYSTALLOGRAPHIC JRNL TITL 2 ANALYSIS OF 2-ALKYLAMINOETHYL-1,1-BISPHOSPHONATES AS JRNL TITL 3 INHIBITORS OF TRYPANOSOMA CRUZI FARNESYL DIPHOSPHATE JRNL TITL 4 SYNTHASE. JRNL REF J.MED.CHEM. V. 55 6445 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22715997 JRNL DOI 10.1021/JM300425Y REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 27229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1370 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1813 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : 0.59000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.30000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.205 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.192 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.335 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3006 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4076 ; 1.861 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 5.498 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;38.024 ;24.348 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 513 ;15.742 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.004 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 447 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2256 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1817 ; 0.988 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2935 ; 1.705 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1189 ; 3.086 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1140 ; 4.505 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4DWG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070868. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27252 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 65.304 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 1YHL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5 MG/ML PROTEIN IN 250 UM REMARK 280 INHIBITOR, 250 UM IPP, 1 MM MAGNESIUM CHLORIDE, MOTHER LIQUOR: REMARK 280 100 MM SODIUM ACETATE, PH 4.6-5.2, 200 MM AMMONIUM SULFATE, 2-10% REMARK 280 PEG4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K, PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.60733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 261.21467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 195.91100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 326.51833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.30367 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 130.60733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 261.21467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 326.51833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 195.91100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.30367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -212.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 29.08650 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 50.37930 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 326.51833 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 362 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 107 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 119 -86.14 -104.07 REMARK 500 THR A 120 161.85 81.48 REMARK 500 ASP A 181 111.10 -168.59 REMARK 500 LYS A 284 -8.33 -142.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 98 OD2 REMARK 620 2 ASP A 102 OD2 86.6 REMARK 620 3 0M8 A 404 O5 92.1 82.8 REMARK 620 4 0M8 A 404 O2 96.1 176.1 94.3 REMARK 620 5 HOH A 722 O 174.3 90.6 92.4 87.0 REMARK 620 6 HOH A 723 O 82.2 93.7 173.5 89.5 93.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 98 OD1 REMARK 620 2 ASP A 102 OD2 87.7 REMARK 620 3 0M8 A 404 O5 105.9 93.7 REMARK 620 4 HOH A 501 O 166.2 96.2 87.1 REMARK 620 5 HOH A 503 O 77.9 86.5 176.2 89.1 REMARK 620 6 HOH A 619 O 79.0 160.7 103.2 93.7 77.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 409 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 176 OD2 REMARK 620 2 THR A 190 OG1 154.0 REMARK 620 3 HOH A 655 O 78.7 85.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 250 OD2 REMARK 620 2 0M8 A 404 O3 86.7 REMARK 620 3 0M8 A 404 O4 91.5 79.9 REMARK 620 4 HOH A 502 O 175.5 97.5 87.5 REMARK 620 5 HOH A 602 O 95.1 176.3 96.8 80.6 REMARK 620 6 HOH A 724 O 98.6 94.6 168.3 82.9 88.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0M8 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 411 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YHK RELATED DB: PDB REMARK 900 RELATED ID: 1YHL RELATED DB: PDB REMARK 900 RELATED ID: 1YHM RELATED DB: PDB REMARK 900 RELATED ID: 3IBA RELATED DB: PDB REMARK 900 RELATED ID: 3ICK RELATED DB: PDB REMARK 900 RELATED ID: 3ICM RELATED DB: PDB REMARK 900 RELATED ID: 3ICN RELATED DB: PDB REMARK 900 RELATED ID: 3ICZ RELATED DB: PDB REMARK 900 RELATED ID: 4DWB RELATED DB: PDB REMARK 900 RELATED ID: 4DXJ RELATED DB: PDB DBREF 4DWG A 1 362 UNP Q95WL3 Q95WL3_TRYCR 1 362 SEQRES 1 A 362 MET ALA SER MET GLU ARG PHE LEU SER VAL TYR ASP GLU SEQRES 2 A 362 VAL GLN ALA PHE LEU LEU ASP GLN LEU GLN SER LYS TYR SEQRES 3 A 362 GLU ILE ASP PRO ASN ARG ALA ARG TYR LEU ARG ILE MET SEQRES 4 A 362 MET ASP THR THR CYS LEU GLY GLY LYS TYR PHE ARG GLY SEQRES 5 A 362 MET THR VAL VAL ASN VAL ALA GLU GLY PHE LEU ALA VAL SEQRES 6 A 362 THR GLN HIS ASP GLU ALA THR LYS GLU ARG ILE LEU HIS SEQRES 7 A 362 ASP ALA CYS VAL GLY GLY TRP MET ILE GLU PHE LEU GLN SEQRES 8 A 362 ALA HIS TYR LEU VAL GLU ASP ASP ILE MET ASP GLY SER SEQRES 9 A 362 VAL MET ARG ARG GLY LYS PRO CYS TRP TYR ARG PHE PRO SEQRES 10 A 362 GLY VAL THR THR GLN CYS ALA ILE ASN ASP GLY ILE ILE SEQRES 11 A 362 LEU LYS SER TRP THR GLN ILE MET ALA TRP HIS TYR PHE SEQRES 12 A 362 ALA ASP ARG PRO PHE LEU LYS ASP LEU LEU CYS LEU PHE SEQRES 13 A 362 GLN LYS VAL ASP TYR ALA THR ALA VAL GLY GLN MET TYR SEQRES 14 A 362 ASP VAL THR SER MET CYS ASP SER ASN LYS LEU ASP PRO SEQRES 15 A 362 GLU VAL ALA GLN PRO MET THR THR ASP PHE ALA GLU PHE SEQRES 16 A 362 THR PRO ALA ILE TYR LYS ARG ILE VAL LYS TYR LYS THR SEQRES 17 A 362 THR PHE TYR THR TYR LEU LEU PRO LEU VAL MET GLY LEU SEQRES 18 A 362 PHE VAL SER GLU ALA ALA ALA SER VAL GLU MET ASN LEU SEQRES 19 A 362 VAL GLU ARG VAL ALA HIS LEU ILE GLY GLU TYR PHE GLN SEQRES 20 A 362 VAL GLN ASP ASP VAL MET ASP CYS PHE THR PRO PRO GLU SEQRES 21 A 362 GLN LEU GLY LYS VAL GLY THR ASP ILE GLU ASP ALA LYS SEQRES 22 A 362 CYS SER TRP LEU ALA VAL THR PHE LEU GLY LYS ALA ASN SEQRES 23 A 362 ALA ALA GLN VAL ALA GLU PHE LYS ALA ASN TYR GLY ASP SEQRES 24 A 362 LYS ASP PRO ALA LYS VAL ALA VAL VAL LYS ARG LEU TYR SEQRES 25 A 362 SER GLU ALA ASN LEU GLN ALA ASP PHE ALA ALA TYR GLU SEQRES 26 A 362 ALA GLU VAL VAL ARG GLU VAL GLU SER LEU ILE GLU GLN SEQRES 27 A 362 LEU LYS VAL LYS SER PRO THR PHE ALA GLU SER VAL ALA SEQRES 28 A 362 VAL VAL TRP GLU LYS THR HIS LYS ARG LYS LYS HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET 0M8 A 404 18 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET NA A 408 1 HET NA A 409 1 HET PEG A 410 7 HET ACT A 411 4 HETNAM MG MAGNESIUM ION HETNAM 0M8 [2-(HEPTYLAMINO)ETHANE-1,1-DIYL]BIS(PHOSPHONIC ACID) HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ACT ACETATE ION FORMUL 2 MG 3(MG 2+) FORMUL 5 0M8 C9 H23 N O6 P2 FORMUL 6 SO4 3(O4 S 2-) FORMUL 9 NA 2(NA 1+) FORMUL 11 PEG C4 H10 O3 FORMUL 12 ACT C2 H3 O2 1- FORMUL 13 HOH *245(H2 O) HELIX 1 1 MET A 1 TYR A 26 1 26 HELIX 2 2 ASP A 29 LEU A 45 1 17 HELIX 3 3 TYR A 49 VAL A 65 1 17 HELIX 4 4 ASP A 69 ASP A 102 1 34 HELIX 5 5 TRP A 113 PHE A 116 5 4 HELIX 6 6 VAL A 119 PHE A 143 1 25 HELIX 7 7 PHE A 148 THR A 172 1 25 HELIX 8 8 ASP A 176 LEU A 180 5 5 HELIX 9 9 THR A 196 THR A 208 1 13 HELIX 10 10 THR A 208 TYR A 213 1 6 HELIX 11 11 TYR A 213 SER A 224 1 12 HELIX 12 12 ALA A 226 VAL A 230 5 5 HELIX 13 13 GLU A 231 THR A 257 1 27 HELIX 14 14 PRO A 258 GLY A 263 1 6 HELIX 15 15 THR A 267 ALA A 272 1 6 HELIX 16 16 SER A 275 ALA A 285 1 11 HELIX 17 17 ASN A 286 TYR A 297 1 12 HELIX 18 18 ASP A 301 ALA A 315 1 15 HELIX 19 19 ASN A 316 LYS A 340 1 25 HELIX 20 20 SER A 343 LYS A 359 1 17 SHEET 1 A 2 MET A 106 ARG A 107 0 SHEET 2 A 2 LYS A 110 PRO A 111 -1 O LYS A 110 N ARG A 107 LINK OD2 ASP A 98 MG MG A 402 1555 1555 2.20 LINK OD1 ASP A 98 MG MG A 403 1555 1555 2.32 LINK OD2 ASP A 102 MG MG A 402 1555 1555 2.46 LINK OD2 ASP A 102 MG MG A 403 1555 1555 2.10 LINK OD2 ASP A 176 NA NA A 409 1555 1555 2.57 LINK OE1 GLU A 183 NA NA A 408 1555 1555 3.10 LINK OG1 THR A 190 NA NA A 409 1555 1555 2.96 LINK OD2 ASP A 250 MG MG A 401 1555 1555 2.33 LINK MG MG A 401 O3 0M8 A 404 1555 1555 1.83 LINK MG MG A 401 O4 0M8 A 404 1555 1555 2.14 LINK MG MG A 401 O HOH A 502 1555 1555 2.11 LINK MG MG A 401 O HOH A 602 1555 1555 2.21 LINK MG MG A 401 O HOH A 724 1555 1555 2.09 LINK MG MG A 402 O5 0M8 A 404 1555 1555 2.06 LINK MG MG A 402 O2 0M8 A 404 1555 1555 2.17 LINK MG MG A 402 O HOH A 722 1555 1555 2.19 LINK MG MG A 402 O HOH A 723 1555 1555 2.33 LINK MG MG A 403 O5 0M8 A 404 1555 1555 2.02 LINK MG MG A 403 O HOH A 501 1555 1555 2.15 LINK MG MG A 403 O HOH A 503 1555 1555 2.34 LINK MG MG A 403 O HOH A 619 1555 1555 2.14 LINK NA NA A 409 O HOH A 655 1555 1555 2.87 SITE 1 AC1 5 ASP A 250 0M8 A 404 HOH A 502 HOH A 602 SITE 2 AC1 5 HOH A 724 SITE 1 AC2 6 ASP A 98 ASP A 102 MG A 403 0M8 A 404 SITE 2 AC2 6 HOH A 722 HOH A 723 SITE 1 AC3 7 ASP A 98 ASP A 102 MG A 402 0M8 A 404 SITE 2 AC3 7 HOH A 501 HOH A 503 HOH A 619 SITE 1 AC4 23 TYR A 94 ASP A 98 ASP A 102 ARG A 107 SITE 2 AC4 23 ASN A 126 ILE A 129 GLN A 167 LYS A 207 SITE 3 AC4 23 GLN A 247 ASP A 250 LYS A 264 MG A 401 SITE 4 AC4 23 MG A 402 MG A 403 HOH A 501 HOH A 502 SITE 5 AC4 23 HOH A 536 HOH A 583 HOH A 619 HOH A 689 SITE 6 AC4 23 HOH A 722 HOH A 724 HOH A 726 SITE 1 AC5 10 GLY A 47 LYS A 48 TYR A 49 PHE A 50 SITE 2 AC5 10 ARG A 51 GLN A 91 ARG A 108 HOH A 725 SITE 3 AC5 10 HOH A 727 HOH A 728 SITE 1 AC6 4 PHE A 17 GLN A 21 HIS A 141 HOH A 640 SITE 1 AC7 6 ASP A 191 ARG A 237 SER A 334 LEU A 335 SITE 2 AC7 6 HOH A 573 HOH A 593 SITE 1 AC8 1 GLU A 183 SITE 1 AC9 5 ASP A 176 THR A 189 THR A 190 ASP A 191 SITE 2 AC9 5 HOH A 655 SITE 1 BC1 8 LYS A 132 GLN A 136 TRP A 140 LEU A 153 SITE 2 BC1 8 PHE A 156 GLN A 157 ASP A 160 HOH A 541 SITE 1 BC2 3 LYS A 201 GLU A 244 HOH A 745 CRYST1 58.173 58.173 391.822 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017190 0.009925 0.000000 0.00000 SCALE2 0.000000 0.019849 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002552 0.00000