HEADER SUGAR BINDING PROTEIN 27-FEB-12 4DXF TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCAL SUPERANTIGEN-LIKE PROTEIN 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: STAPHYLOCOCCAL ENTEROTOXIN-LIKE TOXIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 109-308; COMPND 5 SYNONYM: SUPERANTIGEN-LIKE PROTEIN 4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 426430; SOURCE 4 STRAIN: NEWMAN; SOURCE 5 GENE: NWMN_0391, SSL4NM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: AD494; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-32A.3C KEYWDS OLIGONUCLEOTIDE/OLIGOSACCHARIDE BINDING FOLD, BETA GRASP FOLD, KEYWDS 2 SUPERANTIGEN FOLD, CARBOHYDRATE BINDING, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.J.HERMANS,H.M.BAKER,R.J.LANGLEY,E.N.BAKER,J.F.FRASER REVDAT 3 08-NOV-23 4DXF 1 REMARK SEQADV REVDAT 2 12-MAR-14 4DXF 1 JRNL REVDAT 1 19-SEP-12 4DXF 0 JRNL AUTH S.J.HERMANS,H.M.BAKER,R.P.SEQUEIRA,R.J.LANGLEY,E.N.BAKER, JRNL AUTH 2 J.D.FRASER JRNL TITL STRUCTURAL AND FUNCTIONAL PROPERTIES OF STAPHYLOCOCCAL JRNL TITL 2 SUPERANTIGEN-LIKE PROTEIN 4 JRNL REF INFECT.IMMUN. V. 80 4004 2012 JRNL REFN ISSN 0019-9567 JRNL PMID 22949551 JRNL DOI 10.1128/IAI.00764-12 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 44078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2345 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3196 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.5250 REMARK 3 BIN FREE R VALUE SET COUNT : 175 REMARK 3 BIN FREE R VALUE : 0.5540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3108 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.98000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.72000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.085 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3175 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4258 ; 2.096 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 386 ; 5.900 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;36.412 ;25.541 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 643 ;14.348 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;20.408 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 471 ; 0.157 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2315 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1903 ; 1.407 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3087 ; 2.353 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1272 ; 3.423 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1169 ; 5.554 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DXF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000070903. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46435 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 27.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.69800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2RDH AND 2Z8L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% MPEG 5000, 0.2M BIS-TRIS PROPANE, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.05100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.59750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.05100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.59750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 THR A 1 REMARK 465 LYS A 2 REMARK 465 GLN A 3 REMARK 465 VAL A 4 REMARK 465 PRO A 5 REMARK 465 THR A 6 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 THR B 1 REMARK 465 LYS B 2 REMARK 465 GLN B 3 REMARK 465 VAL B 4 REMARK 465 PRO B 5 REMARK 465 THR B 6 REMARK 465 GLU B 7 REMARK 465 ILE B 8 REMARK 465 ASN B 9 REMARK 465 PRO B 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 ARG B 108 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 66 O HOH A 425 3545 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 183 CG MET A 183 SD -0.163 REMARK 500 VAL B 74 CB VAL B 74 CG1 -0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 70 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU A 134 CB - CG - CD2 ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG A 142 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 151 CB - CG - CD2 ANGL. DEV. = -10.7 DEGREES REMARK 500 ARG A 182 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 LEU B 178 CB - CG - CD1 ANGL. DEV. = 10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 10 -9.67 -59.35 REMARK 500 THR A 38 -158.44 -151.62 REMARK 500 ASP A 48 -142.94 -144.52 REMARK 500 ASP A 193 -60.45 -93.72 REMARK 500 ASP B 48 -142.52 -144.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DXG RELATED DB: PDB DBREF 4DXF A 1 200 UNP A6QE81 A6QE81_STAAE 109 308 DBREF 4DXF B 1 200 UNP A6QE81 A6QE81_STAAE 109 308 SEQADV 4DXF GLY A -3 UNP A6QE81 EXPRESSION TAG SEQADV 4DXF PRO A -2 UNP A6QE81 EXPRESSION TAG SEQADV 4DXF GLY A -1 UNP A6QE81 EXPRESSION TAG SEQADV 4DXF SER A 0 UNP A6QE81 EXPRESSION TAG SEQADV 4DXF GLY B -3 UNP A6QE81 EXPRESSION TAG SEQADV 4DXF PRO B -2 UNP A6QE81 EXPRESSION TAG SEQADV 4DXF GLY B -1 UNP A6QE81 EXPRESSION TAG SEQADV 4DXF SER B 0 UNP A6QE81 EXPRESSION TAG SEQRES 1 A 204 GLY PRO GLY SER THR LYS GLN VAL PRO THR GLU ILE ASN SEQRES 2 A 204 PRO LYS PHE LYS ASP LEU ARG ALA TYR TYR THR LYS PRO SEQRES 3 A 204 SER LEU GLU PHE LYS ASN GLU ILE GLY ILE ILE LEU LYS SEQRES 4 A 204 LYS TRP THR THR ILE ARG PHE MET ASN VAL VAL PRO ASP SEQRES 5 A 204 TYR PHE ILE TYR LYS ILE ALA LEU VAL GLY LYS ASP ASP SEQRES 6 A 204 LYS LYS TYR GLY GLU GLY VAL HIS ARG ASN VAL ASP VAL SEQRES 7 A 204 PHE VAL VAL LEU GLU GLU ASN ASN TYR ASN LEU GLU LYS SEQRES 8 A 204 TYR SER VAL GLY GLY ILE THR LYS SER ASN SER LYS LYS SEQRES 9 A 204 VAL ASP HIS LYS ALA GLY VAL ARG ILE THR LYS GLU ASP SEQRES 10 A 204 ASN LYS GLY THR ILE SER HIS ASP VAL SER GLU PHE LYS SEQRES 11 A 204 ILE THR LYS GLU GLN ILE SER LEU LYS GLU LEU ASP PHE SEQRES 12 A 204 LYS LEU ARG LYS GLN LEU ILE GLU LYS ASN ASN LEU TYR SEQRES 13 A 204 GLY ASN VAL GLY SER GLY LYS ILE VAL ILE LYS MET LYS SEQRES 14 A 204 ASN GLY GLY LYS TYR THR PHE GLU LEU HIS LYS LYS LEU SEQRES 15 A 204 GLN GLU ASN ARG MET ALA ASP VAL ILE ASP GLY THR ASN SEQRES 16 A 204 ILE ASP ASN ILE GLU VAL ASN ILE LYS SEQRES 1 B 204 GLY PRO GLY SER THR LYS GLN VAL PRO THR GLU ILE ASN SEQRES 2 B 204 PRO LYS PHE LYS ASP LEU ARG ALA TYR TYR THR LYS PRO SEQRES 3 B 204 SER LEU GLU PHE LYS ASN GLU ILE GLY ILE ILE LEU LYS SEQRES 4 B 204 LYS TRP THR THR ILE ARG PHE MET ASN VAL VAL PRO ASP SEQRES 5 B 204 TYR PHE ILE TYR LYS ILE ALA LEU VAL GLY LYS ASP ASP SEQRES 6 B 204 LYS LYS TYR GLY GLU GLY VAL HIS ARG ASN VAL ASP VAL SEQRES 7 B 204 PHE VAL VAL LEU GLU GLU ASN ASN TYR ASN LEU GLU LYS SEQRES 8 B 204 TYR SER VAL GLY GLY ILE THR LYS SER ASN SER LYS LYS SEQRES 9 B 204 VAL ASP HIS LYS ALA GLY VAL ARG ILE THR LYS GLU ASP SEQRES 10 B 204 ASN LYS GLY THR ILE SER HIS ASP VAL SER GLU PHE LYS SEQRES 11 B 204 ILE THR LYS GLU GLN ILE SER LEU LYS GLU LEU ASP PHE SEQRES 12 B 204 LYS LEU ARG LYS GLN LEU ILE GLU LYS ASN ASN LEU TYR SEQRES 13 B 204 GLY ASN VAL GLY SER GLY LYS ILE VAL ILE LYS MET LYS SEQRES 14 B 204 ASN GLY GLY LYS TYR THR PHE GLU LEU HIS LYS LYS LEU SEQRES 15 B 204 GLN GLU ASN ARG MET ALA ASP VAL ILE ASP GLY THR ASN SEQRES 16 B 204 ILE ASP ASN ILE GLU VAL ASN ILE LYS HET CL A 301 1 HET GOL B 301 6 HET CL B 302 1 HET CL B 303 1 HET CL B 304 1 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CL 4(CL 1-) FORMUL 4 GOL C3 H8 O3 FORMUL 8 HOH *316(H2 O) HELIX 1 1 ASN A 9 LYS A 11 5 3 HELIX 2 2 PHE A 12 TYR A 19 1 8 HELIX 3 3 LYS A 59 TYR A 64 1 6 HELIX 4 4 LEU A 134 ASN A 150 1 17 HELIX 5 5 GLN A 179 ALA A 184 1 6 HELIX 6 6 PHE B 12 TYR B 19 1 8 HELIX 7 7 LYS B 59 TYR B 64 1 6 HELIX 8 8 LEU B 134 ASN B 150 1 17 HELIX 9 9 GLN B 179 ALA B 184 1 6 SHEET 1 A 6 TYR A 88 VAL A 90 0 SHEET 2 A 6 TYR A 52 ALA A 55 1 N ALA A 55 O SER A 89 SHEET 3 A 6 PHE A 42 VAL A 45 -1 N VAL A 45 O TYR A 52 SHEET 4 A 6 LEU A 24 ILE A 33 -1 N ILE A 32 O ASN A 44 SHEET 5 A 6 GLY A 67 VAL A 76 -1 O VAL A 72 N GLU A 29 SHEET 6 A 6 ILE A 93 LYS A 95 -1 O THR A 94 N ASP A 73 SHEET 1 B 5 ILE A 118 ILE A 127 0 SHEET 2 B 5 HIS A 103 GLU A 112 -1 N ALA A 105 O PHE A 125 SHEET 3 B 5 ILE A 192 LYS A 200 1 O VAL A 197 N ARG A 108 SHEET 4 B 5 SER A 157 MET A 164 -1 N LYS A 163 O ASN A 194 SHEET 5 B 5 LYS A 169 GLU A 173 -1 O TYR A 170 N ILE A 162 SHEET 1 C 2 GLN A 131 SER A 133 0 SHEET 2 C 2 VAL A 186 ASP A 188 -1 O ILE A 187 N ILE A 132 SHEET 1 D 6 TYR B 88 VAL B 90 0 SHEET 2 D 6 TYR B 52 ALA B 55 1 N ALA B 55 O SER B 89 SHEET 3 D 6 PHE B 42 VAL B 45 -1 N MET B 43 O ILE B 54 SHEET 4 D 6 LEU B 24 ILE B 33 -1 N ILE B 32 O ASN B 44 SHEET 5 D 6 GLY B 67 VAL B 76 -1 O HIS B 69 N GLY B 31 SHEET 6 D 6 ILE B 93 LYS B 95 -1 O THR B 94 N ASP B 73 SHEET 1 E 5 ILE B 118 ILE B 127 0 SHEET 2 E 5 HIS B 103 GLU B 112 -1 N ILE B 109 O ASP B 121 SHEET 3 E 5 ILE B 192 LYS B 200 1 O VAL B 197 N ARG B 108 SHEET 4 E 5 SER B 157 MET B 164 -1 N LYS B 163 O ASN B 194 SHEET 5 E 5 LYS B 169 GLU B 173 -1 O TYR B 170 N ILE B 162 SHEET 1 F 2 GLN B 131 SER B 133 0 SHEET 2 F 2 VAL B 186 ASP B 188 -1 O ILE B 187 N ILE B 132 SITE 1 AC1 3 TRP A 37 ASN A 44 LYS A 53 SITE 1 AC2 5 LYS A 27 GLU A 29 LYS B 27 GLU B 29 SITE 2 AC2 5 PRO B 47 SITE 1 AC3 3 ASP A 48 TYR A 49 ASN B 97 SITE 1 AC4 4 ASN A 97 HOH A 463 ASP B 48 TYR B 49 SITE 1 AC5 4 TRP B 37 ASN B 44 LYS B 53 HOH B 431 CRYST1 96.102 81.195 57.301 90.00 105.45 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010406 0.000000 0.002875 0.00000 SCALE2 0.000000 0.012316 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018106 0.00000