data_4DXG # _entry.id 4DXG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4DXG pdb_00004dxg 10.2210/pdb4dxg/pdb RCSB RCSB070904 ? ? WWPDB D_1000070904 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4DXF _pdbx_database_related.details 'Crystal structure of Staphylococcal Superantigen-Like protein 4' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4DXG _pdbx_database_status.recvd_initial_deposition_date 2012-02-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hermans, S.J.' 1 'Baker, H.M.' 2 'Langley, R.J.' 3 'Baker, E.N.' 4 'Fraser, J.F.' 5 # _citation.id primary _citation.title 'Structural and functional properties of staphylococcal superantigen-like protein 4' _citation.journal_abbrev Infect.Immun. _citation.journal_volume 80 _citation.page_first 4004 _citation.page_last 4013 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 0019-9567 _citation.journal_id_CSD 999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22949551 _citation.pdbx_database_id_DOI 10.1128/IAI.00764-12 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hermans, S.J.' 1 ? primary 'Baker, H.M.' 2 ? primary 'Sequeira, R.P.' 3 ? primary 'Langley, R.J.' 4 ? primary 'Baker, E.N.' 5 ? primary 'Fraser, J.D.' 6 ? # _cell.entry_id 4DXG _cell.length_a 61.880 _cell.length_b 78.880 _cell.length_c 97.701 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4DXG _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Staphylococcal enterotoxin-like toxin' 23398.969 1 ? ? 'UNP residues 109-308' ? 2 branched man ;N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-alpha-D-glucopyranose ; 820.744 1 ? ? ? ? 3 non-polymer syn ;PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID) ; 302.368 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 5 water nat water 18.015 62 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Superantigen-Like protein 4' 2 'Sialyl-Lewis X antigen, alpha anomer' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPGSTKQVPTEINPKFKDLRAYYTKPSLEFKNEIGIILKKWTTIRFMNVVPDYFIYKIALVGKDDKKYGEGVHRNVDVFV VLEENNYNLEKYSVGGITKSNSKKVDHKAGVRITKEDNKGTISHDVSEFKITKEQISLKELDFKLRKQLIEKNNLYGNVG SGKIVIKMKNGGKYTFELHKKLQENRMADVIDGTNIDNIEVNIK ; _entity_poly.pdbx_seq_one_letter_code_can ;GPGSTKQVPTEINPKFKDLRAYYTKPSLEFKNEIGIILKKWTTIRFMNVVPDYFIYKIALVGKDDKKYGEGVHRNVDVFV VLEENNYNLEKYSVGGITKSNSKKVDHKAGVRITKEDNKGTISHDVSEFKITKEQISLKELDFKLRKQLIEKNNLYGNVG SGKIVIKMKNGGKYTFELHKKLQENRMADVIDGTNIDNIEVNIK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 SER n 1 5 THR n 1 6 LYS n 1 7 GLN n 1 8 VAL n 1 9 PRO n 1 10 THR n 1 11 GLU n 1 12 ILE n 1 13 ASN n 1 14 PRO n 1 15 LYS n 1 16 PHE n 1 17 LYS n 1 18 ASP n 1 19 LEU n 1 20 ARG n 1 21 ALA n 1 22 TYR n 1 23 TYR n 1 24 THR n 1 25 LYS n 1 26 PRO n 1 27 SER n 1 28 LEU n 1 29 GLU n 1 30 PHE n 1 31 LYS n 1 32 ASN n 1 33 GLU n 1 34 ILE n 1 35 GLY n 1 36 ILE n 1 37 ILE n 1 38 LEU n 1 39 LYS n 1 40 LYS n 1 41 TRP n 1 42 THR n 1 43 THR n 1 44 ILE n 1 45 ARG n 1 46 PHE n 1 47 MET n 1 48 ASN n 1 49 VAL n 1 50 VAL n 1 51 PRO n 1 52 ASP n 1 53 TYR n 1 54 PHE n 1 55 ILE n 1 56 TYR n 1 57 LYS n 1 58 ILE n 1 59 ALA n 1 60 LEU n 1 61 VAL n 1 62 GLY n 1 63 LYS n 1 64 ASP n 1 65 ASP n 1 66 LYS n 1 67 LYS n 1 68 TYR n 1 69 GLY n 1 70 GLU n 1 71 GLY n 1 72 VAL n 1 73 HIS n 1 74 ARG n 1 75 ASN n 1 76 VAL n 1 77 ASP n 1 78 VAL n 1 79 PHE n 1 80 VAL n 1 81 VAL n 1 82 LEU n 1 83 GLU n 1 84 GLU n 1 85 ASN n 1 86 ASN n 1 87 TYR n 1 88 ASN n 1 89 LEU n 1 90 GLU n 1 91 LYS n 1 92 TYR n 1 93 SER n 1 94 VAL n 1 95 GLY n 1 96 GLY n 1 97 ILE n 1 98 THR n 1 99 LYS n 1 100 SER n 1 101 ASN n 1 102 SER n 1 103 LYS n 1 104 LYS n 1 105 VAL n 1 106 ASP n 1 107 HIS n 1 108 LYS n 1 109 ALA n 1 110 GLY n 1 111 VAL n 1 112 ARG n 1 113 ILE n 1 114 THR n 1 115 LYS n 1 116 GLU n 1 117 ASP n 1 118 ASN n 1 119 LYS n 1 120 GLY n 1 121 THR n 1 122 ILE n 1 123 SER n 1 124 HIS n 1 125 ASP n 1 126 VAL n 1 127 SER n 1 128 GLU n 1 129 PHE n 1 130 LYS n 1 131 ILE n 1 132 THR n 1 133 LYS n 1 134 GLU n 1 135 GLN n 1 136 ILE n 1 137 SER n 1 138 LEU n 1 139 LYS n 1 140 GLU n 1 141 LEU n 1 142 ASP n 1 143 PHE n 1 144 LYS n 1 145 LEU n 1 146 ARG n 1 147 LYS n 1 148 GLN n 1 149 LEU n 1 150 ILE n 1 151 GLU n 1 152 LYS n 1 153 ASN n 1 154 ASN n 1 155 LEU n 1 156 TYR n 1 157 GLY n 1 158 ASN n 1 159 VAL n 1 160 GLY n 1 161 SER n 1 162 GLY n 1 163 LYS n 1 164 ILE n 1 165 VAL n 1 166 ILE n 1 167 LYS n 1 168 MET n 1 169 LYS n 1 170 ASN n 1 171 GLY n 1 172 GLY n 1 173 LYS n 1 174 TYR n 1 175 THR n 1 176 PHE n 1 177 GLU n 1 178 LEU n 1 179 HIS n 1 180 LYS n 1 181 LYS n 1 182 LEU n 1 183 GLN n 1 184 GLU n 1 185 ASN n 1 186 ARG n 1 187 MET n 1 188 ALA n 1 189 ASP n 1 190 VAL n 1 191 ILE n 1 192 ASP n 1 193 GLY n 1 194 THR n 1 195 ASN n 1 196 ILE n 1 197 ASP n 1 198 ASN n 1 199 ILE n 1 200 GLU n 1 201 VAL n 1 202 ASN n 1 203 ILE n 1 204 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NWMN_0391, ssl4nm' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Newman _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 426430 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain AD494 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-32a.3c _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A6QE81_STAAE _struct_ref.pdbx_db_accession A6QE81 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TKQVPTEINPKFKDLRAYYTKPSLEFKNEIGIILKKWTTIRFMNVVPDYFIYKIALVGKDDKKYGEGVHRNVDVFVVLEE NNYNLEKYSVGGITKSNSKKVDHKAGVRITKEDNKGTISHDVSEFKITKEQISLKELDFKLRKQLIEKNNLYGNVGSGKI VIKMKNGGKYTFELHKKLQENRMADVIDGTNIDNIEVNIK ; _struct_ref.pdbx_align_begin 109 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4DXG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 204 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A6QE81 _struct_ref_seq.db_align_beg 109 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 308 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 200 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4DXG GLY A 1 ? UNP A6QE81 ? ? 'expression tag' -3 1 1 4DXG PRO A 2 ? UNP A6QE81 ? ? 'expression tag' -2 2 1 4DXG GLY A 3 ? UNP A6QE81 ? ? 'expression tag' -1 3 1 4DXG SER A 4 ? UNP A6QE81 ? ? 'expression tag' 0 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NDG 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-glucopyranose ;N-acetyl-alpha-D-glucosamine; 2-acetamido-2-deoxy-alpha-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PIN non-polymer . ;PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID) ; 'PIPES; 1,4-PIPERAZINEDIETHANESULFONIC ACID' 'C8 H18 N2 O6 S2' 302.368 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SIA 'D-saccharide, alpha linking' . 'N-acetyl-alpha-neuraminic acid' 'N-acetylneuraminic acid; sialic acid; alpha-sialic acid; O-SIALIC ACID' 'C11 H19 N O9' 309.270 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4DXG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.55 _exptl_crystal.density_percent_sol 51.72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.7 _exptl_crystal_grow.pdbx_details '28% MPEG 5000, 0.18M PIPES, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 291.15K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2010-08-20 _diffrn_detector.details 'Osmic mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 4DXG _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 24.42 _reflns.d_resolution_high 2.50 _reflns.number_obs 8563 _reflns.number_all 8563 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.169 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.64 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.747 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.1 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4DXG _refine.ls_number_reflns_obs 8152 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.34 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 99.73 _refine.ls_R_factor_obs 0.18792 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18466 _refine.ls_R_factor_R_free 0.25433 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 404 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.882 _refine.B_iso_mean 25.624 _refine.aniso_B[1][1] -0.82 _refine.aniso_B[2][2] 1.07 _refine.aniso_B[3][3] -0.25 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 4DXF' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.549 _refine.pdbx_overall_ESU_R_Free 0.297 _refine.overall_SU_ML 0.216 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 9.628 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1577 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 76 _refine_hist.number_atoms_solvent 62 _refine_hist.number_atoms_total 1715 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 24.34 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.017 0.022 ? 1688 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.779 2.015 ? 2272 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.343 5.000 ? 195 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 41.469 25.467 ? 75 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 16.318 15.000 ? 330 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 22.773 15.000 ? 6 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.116 0.200 ? 261 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.007 0.020 ? 1198 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 0.890 1.500 ? 965 ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1.697 2.000 ? 1568 ? 'X-RAY DIFFRACTION' r_scbond_it 2.410 3.000 ? 723 ? 'X-RAY DIFFRACTION' r_scangle_it 4.041 4.500 ? 705 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.500 _refine_ls_shell.d_res_low 2.565 _refine_ls_shell.number_reflns_R_work 578 _refine_ls_shell.R_factor_R_work 0.216 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.322 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4DXG _struct.title 'Crystal structure of Staphylococcal Superantigen-Like protein 4 complexed with sialyl Lewis X' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DXG _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'Oligonucleotide/oligosaccharide binding fold, beta grasp fold, Superantigen fold, Carbohydrate binding, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 13 ? LYS A 15 ? ASN A 9 LYS A 11 5 ? 3 HELX_P HELX_P2 2 PHE A 16 ? TYR A 23 ? PHE A 12 TYR A 19 1 ? 8 HELX_P HELX_P3 3 LYS A 63 ? TYR A 68 ? LYS A 59 TYR A 64 1 ? 6 HELX_P HELX_P4 4 LEU A 138 ? ASN A 154 ? LEU A 134 ASN A 150 1 ? 17 HELX_P HELX_P5 5 GLN A 183 ? ALA A 188 ? GLN A 179 ALA A 184 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B NDG . O4 ? ? ? 1_555 B GAL . C1 ? ? B NDG 1 B GAL 2 1_555 ? ? ? ? ? ? ? 1.454 ? ? covale2 covale both ? B NDG . O3 ? ? ? 1_555 B FUC . C1 ? ? B NDG 1 B FUC 4 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale3 covale both ? B GAL . O3 ? ? ? 1_555 B SIA . C2 ? ? B GAL 2 B SIA 3 1_555 ? ? ? ? ? ? ? 1.455 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 92 ? VAL A 94 ? TYR A 88 VAL A 90 A 2 TYR A 56 ? ALA A 59 ? TYR A 52 ALA A 55 A 3 PHE A 46 ? VAL A 49 ? PHE A 42 VAL A 45 A 4 LEU A 28 ? ILE A 37 ? LEU A 24 ILE A 33 A 5 GLY A 71 ? VAL A 80 ? GLY A 67 VAL A 76 A 6 ILE A 97 ? LYS A 99 ? ILE A 93 LYS A 95 B 1 ILE A 122 ? ILE A 131 ? ILE A 118 ILE A 127 B 2 HIS A 107 ? GLU A 116 ? HIS A 103 GLU A 112 B 3 ILE A 196 ? ILE A 203 ? ILE A 192 ILE A 199 B 4 GLY A 162 ? MET A 168 ? GLY A 158 MET A 164 B 5 LYS A 173 ? GLU A 177 ? LYS A 169 GLU A 173 C 1 GLN A 135 ? SER A 137 ? GLN A 131 SER A 133 C 2 VAL A 190 ? ASP A 192 ? VAL A 186 ASP A 188 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 93 ? O SER A 89 N ALA A 59 ? N ALA A 55 A 2 3 O TYR A 56 ? O TYR A 52 N VAL A 49 ? N VAL A 45 A 3 4 O ASN A 48 ? O ASN A 44 N ILE A 36 ? N ILE A 32 A 4 5 N GLY A 35 ? N GLY A 31 O HIS A 73 ? O HIS A 69 A 5 6 N ASP A 77 ? N ASP A 73 O THR A 98 ? O THR A 94 B 1 2 O ILE A 131 ? O ILE A 127 N HIS A 107 ? N HIS A 103 B 2 3 N ARG A 112 ? N ARG A 108 O VAL A 201 ? O VAL A 197 B 3 4 O ASN A 202 ? O ASN A 198 N LYS A 163 ? N LYS A 159 B 4 5 N ILE A 164 ? N ILE A 160 O PHE A 176 ? O PHE A 172 C 1 2 N ILE A 136 ? N ILE A 132 O ILE A 191 ? O ILE A 187 # _database_PDB_matrix.entry_id 4DXG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4DXG _atom_sites.fract_transf_matrix[1][1] 0.016160 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012677 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010235 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 PRO 2 -2 ? ? ? A . n A 1 3 GLY 3 -1 ? ? ? A . n A 1 4 SER 4 0 ? ? ? A . n A 1 5 THR 5 1 ? ? ? A . n A 1 6 LYS 6 2 ? ? ? A . n A 1 7 GLN 7 3 ? ? ? A . n A 1 8 VAL 8 4 ? ? ? A . n A 1 9 PRO 9 5 ? ? ? A . n A 1 10 THR 10 6 ? ? ? A . n A 1 11 GLU 11 7 7 GLU ALA A . n A 1 12 ILE 12 8 8 ILE ILE A . n A 1 13 ASN 13 9 9 ASN ASN A . n A 1 14 PRO 14 10 10 PRO PRO A . n A 1 15 LYS 15 11 11 LYS LYS A . n A 1 16 PHE 16 12 12 PHE PHE A . n A 1 17 LYS 17 13 13 LYS LYS A . n A 1 18 ASP 18 14 14 ASP ASP A . n A 1 19 LEU 19 15 15 LEU LEU A . n A 1 20 ARG 20 16 16 ARG ARG A . n A 1 21 ALA 21 17 17 ALA ALA A . n A 1 22 TYR 22 18 18 TYR TYR A . n A 1 23 TYR 23 19 19 TYR TYR A . n A 1 24 THR 24 20 20 THR THR A . n A 1 25 LYS 25 21 21 LYS LYS A . n A 1 26 PRO 26 22 22 PRO PRO A . n A 1 27 SER 27 23 23 SER SER A . n A 1 28 LEU 28 24 24 LEU LEU A . n A 1 29 GLU 29 25 25 GLU GLU A . n A 1 30 PHE 30 26 26 PHE PHE A . n A 1 31 LYS 31 27 27 LYS LYS A . n A 1 32 ASN 32 28 28 ASN ASN A . n A 1 33 GLU 33 29 29 GLU GLU A . n A 1 34 ILE 34 30 30 ILE ILE A . n A 1 35 GLY 35 31 31 GLY GLY A . n A 1 36 ILE 36 32 32 ILE ILE A . n A 1 37 ILE 37 33 33 ILE ILE A . n A 1 38 LEU 38 34 34 LEU LEU A . n A 1 39 LYS 39 35 35 LYS LYS A . n A 1 40 LYS 40 36 36 LYS LYS A . n A 1 41 TRP 41 37 37 TRP TRP A . n A 1 42 THR 42 38 38 THR THR A . n A 1 43 THR 43 39 39 THR THR A . n A 1 44 ILE 44 40 40 ILE ILE A . n A 1 45 ARG 45 41 41 ARG ARG A . n A 1 46 PHE 46 42 42 PHE PHE A . n A 1 47 MET 47 43 43 MET MET A . n A 1 48 ASN 48 44 44 ASN ASN A . n A 1 49 VAL 49 45 45 VAL VAL A . n A 1 50 VAL 50 46 46 VAL VAL A . n A 1 51 PRO 51 47 47 PRO PRO A . n A 1 52 ASP 52 48 48 ASP ASP A . n A 1 53 TYR 53 49 49 TYR TYR A . n A 1 54 PHE 54 50 50 PHE PHE A . n A 1 55 ILE 55 51 51 ILE ILE A . n A 1 56 TYR 56 52 52 TYR TYR A . n A 1 57 LYS 57 53 53 LYS LYS A . n A 1 58 ILE 58 54 54 ILE ILE A . n A 1 59 ALA 59 55 55 ALA ALA A . n A 1 60 LEU 60 56 56 LEU LEU A . n A 1 61 VAL 61 57 57 VAL VAL A . n A 1 62 GLY 62 58 58 GLY GLY A . n A 1 63 LYS 63 59 59 LYS LYS A . n A 1 64 ASP 64 60 60 ASP ASP A . n A 1 65 ASP 65 61 61 ASP ASP A . n A 1 66 LYS 66 62 62 LYS LYS A . n A 1 67 LYS 67 63 63 LYS LYS A . n A 1 68 TYR 68 64 64 TYR TYR A . n A 1 69 GLY 69 65 65 GLY GLY A . n A 1 70 GLU 70 66 66 GLU GLU A . n A 1 71 GLY 71 67 67 GLY GLY A . n A 1 72 VAL 72 68 68 VAL VAL A . n A 1 73 HIS 73 69 69 HIS HIS A . n A 1 74 ARG 74 70 70 ARG ARG A . n A 1 75 ASN 75 71 71 ASN ASN A . n A 1 76 VAL 76 72 72 VAL VAL A . n A 1 77 ASP 77 73 73 ASP ASP A . n A 1 78 VAL 78 74 74 VAL VAL A . n A 1 79 PHE 79 75 75 PHE PHE A . n A 1 80 VAL 80 76 76 VAL VAL A . n A 1 81 VAL 81 77 77 VAL VAL A . n A 1 82 LEU 82 78 78 LEU LEU A . n A 1 83 GLU 83 79 79 GLU GLU A . n A 1 84 GLU 84 80 80 GLU GLU A . n A 1 85 ASN 85 81 81 ASN ASN A . n A 1 86 ASN 86 82 82 ASN ASN A . n A 1 87 TYR 87 83 83 TYR TYR A . n A 1 88 ASN 88 84 84 ASN ASN A . n A 1 89 LEU 89 85 85 LEU LEU A . n A 1 90 GLU 90 86 86 GLU GLU A . n A 1 91 LYS 91 87 87 LYS LYS A . n A 1 92 TYR 92 88 88 TYR TYR A . n A 1 93 SER 93 89 89 SER SER A . n A 1 94 VAL 94 90 90 VAL VAL A . n A 1 95 GLY 95 91 91 GLY GLY A . n A 1 96 GLY 96 92 92 GLY GLY A . n A 1 97 ILE 97 93 93 ILE ILE A . n A 1 98 THR 98 94 94 THR THR A . n A 1 99 LYS 99 95 95 LYS LYS A . n A 1 100 SER 100 96 96 SER SER A . n A 1 101 ASN 101 97 97 ASN ASN A . n A 1 102 SER 102 98 98 SER SER A . n A 1 103 LYS 103 99 99 LYS LYS A . n A 1 104 LYS 104 100 100 LYS LYS A . n A 1 105 VAL 105 101 101 VAL VAL A . n A 1 106 ASP 106 102 102 ASP ASP A . n A 1 107 HIS 107 103 103 HIS HIS A . n A 1 108 LYS 108 104 104 LYS LYS A . n A 1 109 ALA 109 105 105 ALA ALA A . n A 1 110 GLY 110 106 106 GLY GLY A . n A 1 111 VAL 111 107 107 VAL VAL A . n A 1 112 ARG 112 108 108 ARG ARG A . n A 1 113 ILE 113 109 109 ILE ILE A . n A 1 114 THR 114 110 110 THR THR A . n A 1 115 LYS 115 111 111 LYS LYS A . n A 1 116 GLU 116 112 112 GLU GLU A . n A 1 117 ASP 117 113 113 ASP ASP A . n A 1 118 ASN 118 114 114 ASN ASN A . n A 1 119 LYS 119 115 115 LYS LYS A . n A 1 120 GLY 120 116 116 GLY GLY A . n A 1 121 THR 121 117 117 THR THR A . n A 1 122 ILE 122 118 118 ILE ILE A . n A 1 123 SER 123 119 119 SER SER A . n A 1 124 HIS 124 120 120 HIS HIS A . n A 1 125 ASP 125 121 121 ASP ASP A . n A 1 126 VAL 126 122 122 VAL VAL A . n A 1 127 SER 127 123 123 SER SER A . n A 1 128 GLU 128 124 124 GLU GLU A . n A 1 129 PHE 129 125 125 PHE PHE A . n A 1 130 LYS 130 126 126 LYS LYS A . n A 1 131 ILE 131 127 127 ILE ILE A . n A 1 132 THR 132 128 128 THR THR A . n A 1 133 LYS 133 129 129 LYS LYS A . n A 1 134 GLU 134 130 130 GLU GLU A . n A 1 135 GLN 135 131 131 GLN GLN A . n A 1 136 ILE 136 132 132 ILE ILE A . n A 1 137 SER 137 133 133 SER SER A . n A 1 138 LEU 138 134 134 LEU LEU A . n A 1 139 LYS 139 135 135 LYS LYS A . n A 1 140 GLU 140 136 136 GLU GLU A . n A 1 141 LEU 141 137 137 LEU LEU A . n A 1 142 ASP 142 138 138 ASP ASP A . n A 1 143 PHE 143 139 139 PHE PHE A . n A 1 144 LYS 144 140 140 LYS LYS A . n A 1 145 LEU 145 141 141 LEU LEU A . n A 1 146 ARG 146 142 142 ARG ARG A . n A 1 147 LYS 147 143 143 LYS LYS A . n A 1 148 GLN 148 144 144 GLN GLN A . n A 1 149 LEU 149 145 145 LEU LEU A . n A 1 150 ILE 150 146 146 ILE ILE A . n A 1 151 GLU 151 147 147 GLU GLU A . n A 1 152 LYS 152 148 148 LYS LYS A . n A 1 153 ASN 153 149 149 ASN ASN A . n A 1 154 ASN 154 150 150 ASN ASN A . n A 1 155 LEU 155 151 151 LEU LEU A . n A 1 156 TYR 156 152 152 TYR TYR A . n A 1 157 GLY 157 153 153 GLY GLY A . n A 1 158 ASN 158 154 154 ASN ASN A . n A 1 159 VAL 159 155 155 VAL VAL A . n A 1 160 GLY 160 156 156 GLY GLY A . n A 1 161 SER 161 157 157 SER SER A . n A 1 162 GLY 162 158 158 GLY GLY A . n A 1 163 LYS 163 159 159 LYS LYS A . n A 1 164 ILE 164 160 160 ILE ILE A . n A 1 165 VAL 165 161 161 VAL VAL A . n A 1 166 ILE 166 162 162 ILE ILE A . n A 1 167 LYS 167 163 163 LYS LYS A . n A 1 168 MET 168 164 164 MET MET A . n A 1 169 LYS 169 165 165 LYS LYS A . n A 1 170 ASN 170 166 166 ASN ASN A . n A 1 171 GLY 171 167 167 GLY GLY A . n A 1 172 GLY 172 168 168 GLY GLY A . n A 1 173 LYS 173 169 169 LYS LYS A . n A 1 174 TYR 174 170 170 TYR TYR A . n A 1 175 THR 175 171 171 THR THR A . n A 1 176 PHE 176 172 172 PHE PHE A . n A 1 177 GLU 177 173 173 GLU GLU A . n A 1 178 LEU 178 174 174 LEU LEU A . n A 1 179 HIS 179 175 175 HIS HIS A . n A 1 180 LYS 180 176 176 LYS LYS A . n A 1 181 LYS 181 177 177 LYS LYS A . n A 1 182 LEU 182 178 178 LEU LEU A . n A 1 183 GLN 183 179 179 GLN GLN A . n A 1 184 GLU 184 180 180 GLU GLU A . n A 1 185 ASN 185 181 181 ASN ASN A . n A 1 186 ARG 186 182 182 ARG ARG A . n A 1 187 MET 187 183 183 MET MET A . n A 1 188 ALA 188 184 184 ALA ALA A . n A 1 189 ASP 189 185 185 ASP ASP A . n A 1 190 VAL 190 186 186 VAL VAL A . n A 1 191 ILE 191 187 187 ILE ILE A . n A 1 192 ASP 192 188 188 ASP ASP A . n A 1 193 GLY 193 189 189 GLY GLY A . n A 1 194 THR 194 190 190 THR THR A . n A 1 195 ASN 195 191 191 ASN ASN A . n A 1 196 ILE 196 192 192 ILE ILE A . n A 1 197 ASP 197 193 193 ASP ASP A . n A 1 198 ASN 198 194 194 ASN ASN A . n A 1 199 ILE 199 195 195 ILE ILE A . n A 1 200 GLU 200 196 196 GLU GLU A . n A 1 201 VAL 201 197 197 VAL VAL A . n A 1 202 ASN 202 198 198 ASN ASN A . n A 1 203 ILE 203 199 199 ILE ILE A . n A 1 204 LYS 204 200 200 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PIN 1 305 11 PIN PIN A . D 4 CL 1 306 11 CL CL A . E 4 CL 1 307 12 CL CL A . F 5 HOH 1 401 11 HOH HOH A . F 5 HOH 2 402 12 HOH HOH A . F 5 HOH 3 403 13 HOH HOH A . F 5 HOH 4 404 14 HOH HOH A . F 5 HOH 5 405 15 HOH HOH A . F 5 HOH 6 406 16 HOH HOH A . F 5 HOH 7 407 17 HOH HOH A . F 5 HOH 8 408 18 HOH HOH A . F 5 HOH 9 409 19 HOH HOH A . F 5 HOH 10 410 20 HOH HOH A . F 5 HOH 11 411 21 HOH HOH A . F 5 HOH 12 412 22 HOH HOH A . F 5 HOH 13 413 23 HOH HOH A . F 5 HOH 14 414 24 HOH HOH A . F 5 HOH 15 415 25 HOH HOH A . F 5 HOH 16 416 26 HOH HOH A . F 5 HOH 17 417 27 HOH HOH A . F 5 HOH 18 418 28 HOH HOH A . F 5 HOH 19 419 29 HOH HOH A . F 5 HOH 20 420 31 HOH HOH A . F 5 HOH 21 421 32 HOH HOH A . F 5 HOH 22 422 33 HOH HOH A . F 5 HOH 23 423 34 HOH HOH A . F 5 HOH 24 424 36 HOH HOH A . F 5 HOH 25 425 37 HOH HOH A . F 5 HOH 26 426 38 HOH HOH A . F 5 HOH 27 427 39 HOH HOH A . F 5 HOH 28 428 40 HOH HOH A . F 5 HOH 29 429 41 HOH HOH A . F 5 HOH 30 430 42 HOH HOH A . F 5 HOH 31 431 43 HOH HOH A . F 5 HOH 32 432 44 HOH HOH A . F 5 HOH 33 433 45 HOH HOH A . F 5 HOH 34 434 46 HOH HOH A . F 5 HOH 35 435 47 HOH HOH A . F 5 HOH 36 436 48 HOH HOH A . F 5 HOH 37 437 49 HOH HOH A . F 5 HOH 38 438 50 HOH HOH A . F 5 HOH 39 439 51 HOH HOH A . F 5 HOH 40 440 52 HOH HOH A . F 5 HOH 41 441 53 HOH HOH A . F 5 HOH 42 442 54 HOH HOH A . F 5 HOH 43 443 55 HOH HOH A . F 5 HOH 44 444 56 HOH HOH A . F 5 HOH 45 445 57 HOH HOH A . F 5 HOH 46 446 58 HOH HOH A . F 5 HOH 47 447 60 HOH HOH A . F 5 HOH 48 448 61 HOH HOH A . F 5 HOH 49 449 63 HOH HOH A . F 5 HOH 50 450 64 HOH HOH A . F 5 HOH 51 451 65 HOH HOH A . F 5 HOH 52 452 66 HOH HOH A . F 5 HOH 53 453 67 HOH HOH A . F 5 HOH 54 454 68 HOH HOH A . F 5 HOH 55 455 69 HOH HOH A . F 5 HOH 56 456 70 HOH HOH A . F 5 HOH 57 457 71 HOH HOH A . F 5 HOH 58 458 72 HOH HOH A . F 5 HOH 59 459 73 HOH HOH A . F 5 HOH 60 460 74 HOH HOH A . F 5 HOH 61 461 75 HOH HOH A . F 5 HOH 62 462 76 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900122 _pdbx_molecule_features.name 'Sialyl-Lewis X antigen, alpha anomer' _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Antigen _pdbx_molecule_features.details 'oligosaccharide with branches' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900122 _pdbx_molecule.asym_id B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-09-19 2 'Structure model' 1 1 2014-03-12 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2023-11-08 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Structure summary' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Refinement description' 10 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' entity_name_com 5 3 'Structure model' pdbx_branch_scheme 6 3 'Structure model' pdbx_chem_comp_identifier 7 3 'Structure model' pdbx_entity_branch 8 3 'Structure model' pdbx_entity_branch_descriptor 9 3 'Structure model' pdbx_entity_branch_link 10 3 'Structure model' pdbx_entity_branch_list 11 3 'Structure model' pdbx_entity_nonpoly 12 3 'Structure model' pdbx_molecule_features 13 3 'Structure model' pdbx_nonpoly_scheme 14 3 'Structure model' pdbx_struct_assembly_gen 15 3 'Structure model' struct_asym 16 3 'Structure model' struct_conn 17 3 'Structure model' struct_ref_seq_dif 18 3 'Structure model' struct_site 19 3 'Structure model' struct_site_gen 20 4 'Structure model' chem_comp 21 4 'Structure model' chem_comp_atom 22 4 'Structure model' chem_comp_bond 23 4 'Structure model' database_2 24 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_asym_id' 10 3 'Structure model' '_atom_site.label_atom_id' 11 3 'Structure model' '_atom_site.label_comp_id' 12 3 'Structure model' '_atom_site.label_entity_id' 13 3 'Structure model' '_atom_site.type_symbol' 14 3 'Structure model' '_chem_comp.name' 15 3 'Structure model' '_chem_comp.type' 16 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 17 3 'Structure model' '_struct_conn.pdbx_dist_value' 18 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 20 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 31 3 'Structure model' '_struct_ref_seq_dif.details' 32 4 'Structure model' '_chem_comp.pdbx_synonyms' 33 4 'Structure model' '_database_2.pdbx_DOI' 34 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 38 ? ? -131.01 -158.10 2 1 ASP A 48 ? ? -145.22 -153.08 3 1 ASN A 71 ? ? 60.42 62.06 4 1 ASN A 84 ? ? 71.27 31.91 5 1 LYS A 99 ? ? 179.45 174.81 6 1 ASP A 102 ? ? -153.41 87.47 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 7 ? CG ? A GLU 11 CG 2 1 Y 1 A GLU 7 ? CD ? A GLU 11 CD 3 1 Y 1 A GLU 7 ? OE1 ? A GLU 11 OE1 4 1 Y 1 A GLU 7 ? OE2 ? A GLU 11 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A PRO -2 ? A PRO 2 3 1 Y 1 A GLY -1 ? A GLY 3 4 1 Y 1 A SER 0 ? A SER 4 5 1 Y 1 A THR 1 ? A THR 5 6 1 Y 1 A LYS 2 ? A LYS 6 7 1 Y 1 A GLN 3 ? A GLN 7 8 1 Y 1 A VAL 4 ? A VAL 8 9 1 Y 1 A PRO 5 ? A PRO 9 10 1 Y 1 A THR 6 ? A THR 10 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 FUC C1 C N R 75 FUC C2 C N S 76 FUC C3 C N R 77 FUC C4 C N S 78 FUC C5 C N S 79 FUC C6 C N N 80 FUC O1 O N N 81 FUC O2 O N N 82 FUC O3 O N N 83 FUC O4 O N N 84 FUC O5 O N N 85 FUC H1 H N N 86 FUC H2 H N N 87 FUC H3 H N N 88 FUC H4 H N N 89 FUC H5 H N N 90 FUC H61 H N N 91 FUC H62 H N N 92 FUC H63 H N N 93 FUC HO1 H N N 94 FUC HO2 H N N 95 FUC HO3 H N N 96 FUC HO4 H N N 97 GAL C1 C N R 98 GAL C2 C N R 99 GAL C3 C N S 100 GAL C4 C N R 101 GAL C5 C N R 102 GAL C6 C N N 103 GAL O1 O N N 104 GAL O2 O N N 105 GAL O3 O N N 106 GAL O4 O N N 107 GAL O5 O N N 108 GAL O6 O N N 109 GAL H1 H N N 110 GAL H2 H N N 111 GAL H3 H N N 112 GAL H4 H N N 113 GAL H5 H N N 114 GAL H61 H N N 115 GAL H62 H N N 116 GAL HO1 H N N 117 GAL HO2 H N N 118 GAL HO3 H N N 119 GAL HO4 H N N 120 GAL HO6 H N N 121 GLN N N N N 122 GLN CA C N S 123 GLN C C N N 124 GLN O O N N 125 GLN CB C N N 126 GLN CG C N N 127 GLN CD C N N 128 GLN OE1 O N N 129 GLN NE2 N N N 130 GLN OXT O N N 131 GLN H H N N 132 GLN H2 H N N 133 GLN HA H N N 134 GLN HB2 H N N 135 GLN HB3 H N N 136 GLN HG2 H N N 137 GLN HG3 H N N 138 GLN HE21 H N N 139 GLN HE22 H N N 140 GLN HXT H N N 141 GLU N N N N 142 GLU CA C N S 143 GLU C C N N 144 GLU O O N N 145 GLU CB C N N 146 GLU CG C N N 147 GLU CD C N N 148 GLU OE1 O N N 149 GLU OE2 O N N 150 GLU OXT O N N 151 GLU H H N N 152 GLU H2 H N N 153 GLU HA H N N 154 GLU HB2 H N N 155 GLU HB3 H N N 156 GLU HG2 H N N 157 GLU HG3 H N N 158 GLU HE2 H N N 159 GLU HXT H N N 160 GLY N N N N 161 GLY CA C N N 162 GLY C C N N 163 GLY O O N N 164 GLY OXT O N N 165 GLY H H N N 166 GLY H2 H N N 167 GLY HA2 H N N 168 GLY HA3 H N N 169 GLY HXT H N N 170 HIS N N N N 171 HIS CA C N S 172 HIS C C N N 173 HIS O O N N 174 HIS CB C N N 175 HIS CG C Y N 176 HIS ND1 N Y N 177 HIS CD2 C Y N 178 HIS CE1 C Y N 179 HIS NE2 N Y N 180 HIS OXT O N N 181 HIS H H N N 182 HIS H2 H N N 183 HIS HA H N N 184 HIS HB2 H N N 185 HIS HB3 H N N 186 HIS HD1 H N N 187 HIS HD2 H N N 188 HIS HE1 H N N 189 HIS HE2 H N N 190 HIS HXT H N N 191 HOH O O N N 192 HOH H1 H N N 193 HOH H2 H N N 194 ILE N N N N 195 ILE CA C N S 196 ILE C C N N 197 ILE O O N N 198 ILE CB C N S 199 ILE CG1 C N N 200 ILE CG2 C N N 201 ILE CD1 C N N 202 ILE OXT O N N 203 ILE H H N N 204 ILE H2 H N N 205 ILE HA H N N 206 ILE HB H N N 207 ILE HG12 H N N 208 ILE HG13 H N N 209 ILE HG21 H N N 210 ILE HG22 H N N 211 ILE HG23 H N N 212 ILE HD11 H N N 213 ILE HD12 H N N 214 ILE HD13 H N N 215 ILE HXT H N N 216 LEU N N N N 217 LEU CA C N S 218 LEU C C N N 219 LEU O O N N 220 LEU CB C N N 221 LEU CG C N N 222 LEU CD1 C N N 223 LEU CD2 C N N 224 LEU OXT O N N 225 LEU H H N N 226 LEU H2 H N N 227 LEU HA H N N 228 LEU HB2 H N N 229 LEU HB3 H N N 230 LEU HG H N N 231 LEU HD11 H N N 232 LEU HD12 H N N 233 LEU HD13 H N N 234 LEU HD21 H N N 235 LEU HD22 H N N 236 LEU HD23 H N N 237 LEU HXT H N N 238 LYS N N N N 239 LYS CA C N S 240 LYS C C N N 241 LYS O O N N 242 LYS CB C N N 243 LYS CG C N N 244 LYS CD C N N 245 LYS CE C N N 246 LYS NZ N N N 247 LYS OXT O N N 248 LYS H H N N 249 LYS H2 H N N 250 LYS HA H N N 251 LYS HB2 H N N 252 LYS HB3 H N N 253 LYS HG2 H N N 254 LYS HG3 H N N 255 LYS HD2 H N N 256 LYS HD3 H N N 257 LYS HE2 H N N 258 LYS HE3 H N N 259 LYS HZ1 H N N 260 LYS HZ2 H N N 261 LYS HZ3 H N N 262 LYS HXT H N N 263 MET N N N N 264 MET CA C N S 265 MET C C N N 266 MET O O N N 267 MET CB C N N 268 MET CG C N N 269 MET SD S N N 270 MET CE C N N 271 MET OXT O N N 272 MET H H N N 273 MET H2 H N N 274 MET HA H N N 275 MET HB2 H N N 276 MET HB3 H N N 277 MET HG2 H N N 278 MET HG3 H N N 279 MET HE1 H N N 280 MET HE2 H N N 281 MET HE3 H N N 282 MET HXT H N N 283 NDG C1 C N S 284 NDG C2 C N R 285 NDG C3 C N R 286 NDG C4 C N S 287 NDG C5 C N R 288 NDG C6 C N N 289 NDG C7 C N N 290 NDG C8 C N N 291 NDG O5 O N N 292 NDG O3 O N N 293 NDG O4 O N N 294 NDG O6 O N N 295 NDG O7 O N N 296 NDG N2 N N N 297 NDG O1 O N N 298 NDG H1 H N N 299 NDG H2 H N N 300 NDG H3 H N N 301 NDG H4 H N N 302 NDG H5 H N N 303 NDG H61 H N N 304 NDG H62 H N N 305 NDG H81 H N N 306 NDG H82 H N N 307 NDG H83 H N N 308 NDG HO3 H N N 309 NDG HO4 H N N 310 NDG HO6 H N N 311 NDG HN2 H N N 312 NDG HO1 H N N 313 PHE N N N N 314 PHE CA C N S 315 PHE C C N N 316 PHE O O N N 317 PHE CB C N N 318 PHE CG C Y N 319 PHE CD1 C Y N 320 PHE CD2 C Y N 321 PHE CE1 C Y N 322 PHE CE2 C Y N 323 PHE CZ C Y N 324 PHE OXT O N N 325 PHE H H N N 326 PHE H2 H N N 327 PHE HA H N N 328 PHE HB2 H N N 329 PHE HB3 H N N 330 PHE HD1 H N N 331 PHE HD2 H N N 332 PHE HE1 H N N 333 PHE HE2 H N N 334 PHE HZ H N N 335 PHE HXT H N N 336 PIN C1 C N N 337 PIN C2 C N N 338 PIN N1 N N N 339 PIN C3 C N N 340 PIN C4 C N N 341 PIN "C1'" C N N 342 PIN "C2'" C N N 343 PIN "N1'" N N N 344 PIN "C3'" C N N 345 PIN "C4'" C N N 346 PIN S1 S N N 347 PIN "S1'" S N N 348 PIN O1 O N N 349 PIN O2 O N N 350 PIN O3 O N N 351 PIN "O1'" O N N 352 PIN "O2'" O N N 353 PIN "O3'" O N N 354 PIN H11 H N N 355 PIN H12 H N N 356 PIN H21 H N N 357 PIN H22 H N N 358 PIN H31 H N N 359 PIN H32 H N N 360 PIN H41 H N N 361 PIN H42 H N N 362 PIN "H1'1" H N N 363 PIN "H1'2" H N N 364 PIN "H2'1" H N N 365 PIN "H2'2" H N N 366 PIN "H3'1" H N N 367 PIN "H3'2" H N N 368 PIN "H4'1" H N N 369 PIN "H4'2" H N N 370 PIN HO3 H N N 371 PIN "HO3'" H N N 372 PRO N N N N 373 PRO CA C N S 374 PRO C C N N 375 PRO O O N N 376 PRO CB C N N 377 PRO CG C N N 378 PRO CD C N N 379 PRO OXT O N N 380 PRO H H N N 381 PRO HA H N N 382 PRO HB2 H N N 383 PRO HB3 H N N 384 PRO HG2 H N N 385 PRO HG3 H N N 386 PRO HD2 H N N 387 PRO HD3 H N N 388 PRO HXT H N N 389 SER N N N N 390 SER CA C N S 391 SER C C N N 392 SER O O N N 393 SER CB C N N 394 SER OG O N N 395 SER OXT O N N 396 SER H H N N 397 SER H2 H N N 398 SER HA H N N 399 SER HB2 H N N 400 SER HB3 H N N 401 SER HG H N N 402 SER HXT H N N 403 SIA C1 C N N 404 SIA C2 C N R 405 SIA C3 C N N 406 SIA C4 C N S 407 SIA C5 C N R 408 SIA C6 C N R 409 SIA C7 C N R 410 SIA C8 C N R 411 SIA C9 C N N 412 SIA C10 C N N 413 SIA C11 C N N 414 SIA N5 N N N 415 SIA O1A O N N 416 SIA O1B O N N 417 SIA O2 O N N 418 SIA O4 O N N 419 SIA O6 O N N 420 SIA O7 O N N 421 SIA O8 O N N 422 SIA O9 O N N 423 SIA O10 O N N 424 SIA H32 H N N 425 SIA H31 H N N 426 SIA H4 H N N 427 SIA H5 H N N 428 SIA H6 H N N 429 SIA H7 H N N 430 SIA H8 H N N 431 SIA H92 H N N 432 SIA H91 H N N 433 SIA H111 H N N 434 SIA H113 H N N 435 SIA H112 H N N 436 SIA HN5 H N N 437 SIA HO1B H N N 438 SIA HO2 H N N 439 SIA HO4 H N N 440 SIA HO7 H N N 441 SIA HO8 H N N 442 SIA HO9 H N N 443 THR N N N N 444 THR CA C N S 445 THR C C N N 446 THR O O N N 447 THR CB C N R 448 THR OG1 O N N 449 THR CG2 C N N 450 THR OXT O N N 451 THR H H N N 452 THR H2 H N N 453 THR HA H N N 454 THR HB H N N 455 THR HG1 H N N 456 THR HG21 H N N 457 THR HG22 H N N 458 THR HG23 H N N 459 THR HXT H N N 460 TRP N N N N 461 TRP CA C N S 462 TRP C C N N 463 TRP O O N N 464 TRP CB C N N 465 TRP CG C Y N 466 TRP CD1 C Y N 467 TRP CD2 C Y N 468 TRP NE1 N Y N 469 TRP CE2 C Y N 470 TRP CE3 C Y N 471 TRP CZ2 C Y N 472 TRP CZ3 C Y N 473 TRP CH2 C Y N 474 TRP OXT O N N 475 TRP H H N N 476 TRP H2 H N N 477 TRP HA H N N 478 TRP HB2 H N N 479 TRP HB3 H N N 480 TRP HD1 H N N 481 TRP HE1 H N N 482 TRP HE3 H N N 483 TRP HZ2 H N N 484 TRP HZ3 H N N 485 TRP HH2 H N N 486 TRP HXT H N N 487 TYR N N N N 488 TYR CA C N S 489 TYR C C N N 490 TYR O O N N 491 TYR CB C N N 492 TYR CG C Y N 493 TYR CD1 C Y N 494 TYR CD2 C Y N 495 TYR CE1 C Y N 496 TYR CE2 C Y N 497 TYR CZ C Y N 498 TYR OH O N N 499 TYR OXT O N N 500 TYR H H N N 501 TYR H2 H N N 502 TYR HA H N N 503 TYR HB2 H N N 504 TYR HB3 H N N 505 TYR HD1 H N N 506 TYR HD2 H N N 507 TYR HE1 H N N 508 TYR HE2 H N N 509 TYR HH H N N 510 TYR HXT H N N 511 VAL N N N N 512 VAL CA C N S 513 VAL C C N N 514 VAL O O N N 515 VAL CB C N N 516 VAL CG1 C N N 517 VAL CG2 C N N 518 VAL OXT O N N 519 VAL H H N N 520 VAL H2 H N N 521 VAL HA H N N 522 VAL HB H N N 523 VAL HG11 H N N 524 VAL HG12 H N N 525 VAL HG13 H N N 526 VAL HG21 H N N 527 VAL HG22 H N N 528 VAL HG23 H N N 529 VAL HXT H N N 530 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 FUC C1 C2 sing N N 70 FUC C1 O1 sing N N 71 FUC C1 O5 sing N N 72 FUC C1 H1 sing N N 73 FUC C2 C3 sing N N 74 FUC C2 O2 sing N N 75 FUC C2 H2 sing N N 76 FUC C3 C4 sing N N 77 FUC C3 O3 sing N N 78 FUC C3 H3 sing N N 79 FUC C4 C5 sing N N 80 FUC C4 O4 sing N N 81 FUC C4 H4 sing N N 82 FUC C5 C6 sing N N 83 FUC C5 O5 sing N N 84 FUC C5 H5 sing N N 85 FUC C6 H61 sing N N 86 FUC C6 H62 sing N N 87 FUC C6 H63 sing N N 88 FUC O1 HO1 sing N N 89 FUC O2 HO2 sing N N 90 FUC O3 HO3 sing N N 91 FUC O4 HO4 sing N N 92 GAL C1 C2 sing N N 93 GAL C1 O1 sing N N 94 GAL C1 O5 sing N N 95 GAL C1 H1 sing N N 96 GAL C2 C3 sing N N 97 GAL C2 O2 sing N N 98 GAL C2 H2 sing N N 99 GAL C3 C4 sing N N 100 GAL C3 O3 sing N N 101 GAL C3 H3 sing N N 102 GAL C4 C5 sing N N 103 GAL C4 O4 sing N N 104 GAL C4 H4 sing N N 105 GAL C5 C6 sing N N 106 GAL C5 O5 sing N N 107 GAL C5 H5 sing N N 108 GAL C6 O6 sing N N 109 GAL C6 H61 sing N N 110 GAL C6 H62 sing N N 111 GAL O1 HO1 sing N N 112 GAL O2 HO2 sing N N 113 GAL O3 HO3 sing N N 114 GAL O4 HO4 sing N N 115 GAL O6 HO6 sing N N 116 GLN N CA sing N N 117 GLN N H sing N N 118 GLN N H2 sing N N 119 GLN CA C sing N N 120 GLN CA CB sing N N 121 GLN CA HA sing N N 122 GLN C O doub N N 123 GLN C OXT sing N N 124 GLN CB CG sing N N 125 GLN CB HB2 sing N N 126 GLN CB HB3 sing N N 127 GLN CG CD sing N N 128 GLN CG HG2 sing N N 129 GLN CG HG3 sing N N 130 GLN CD OE1 doub N N 131 GLN CD NE2 sing N N 132 GLN NE2 HE21 sing N N 133 GLN NE2 HE22 sing N N 134 GLN OXT HXT sing N N 135 GLU N CA sing N N 136 GLU N H sing N N 137 GLU N H2 sing N N 138 GLU CA C sing N N 139 GLU CA CB sing N N 140 GLU CA HA sing N N 141 GLU C O doub N N 142 GLU C OXT sing N N 143 GLU CB CG sing N N 144 GLU CB HB2 sing N N 145 GLU CB HB3 sing N N 146 GLU CG CD sing N N 147 GLU CG HG2 sing N N 148 GLU CG HG3 sing N N 149 GLU CD OE1 doub N N 150 GLU CD OE2 sing N N 151 GLU OE2 HE2 sing N N 152 GLU OXT HXT sing N N 153 GLY N CA sing N N 154 GLY N H sing N N 155 GLY N H2 sing N N 156 GLY CA C sing N N 157 GLY CA HA2 sing N N 158 GLY CA HA3 sing N N 159 GLY C O doub N N 160 GLY C OXT sing N N 161 GLY OXT HXT sing N N 162 HIS N CA sing N N 163 HIS N H sing N N 164 HIS N H2 sing N N 165 HIS CA C sing N N 166 HIS CA CB sing N N 167 HIS CA HA sing N N 168 HIS C O doub N N 169 HIS C OXT sing N N 170 HIS CB CG sing N N 171 HIS CB HB2 sing N N 172 HIS CB HB3 sing N N 173 HIS CG ND1 sing Y N 174 HIS CG CD2 doub Y N 175 HIS ND1 CE1 doub Y N 176 HIS ND1 HD1 sing N N 177 HIS CD2 NE2 sing Y N 178 HIS CD2 HD2 sing N N 179 HIS CE1 NE2 sing Y N 180 HIS CE1 HE1 sing N N 181 HIS NE2 HE2 sing N N 182 HIS OXT HXT sing N N 183 HOH O H1 sing N N 184 HOH O H2 sing N N 185 ILE N CA sing N N 186 ILE N H sing N N 187 ILE N H2 sing N N 188 ILE CA C sing N N 189 ILE CA CB sing N N 190 ILE CA HA sing N N 191 ILE C O doub N N 192 ILE C OXT sing N N 193 ILE CB CG1 sing N N 194 ILE CB CG2 sing N N 195 ILE CB HB sing N N 196 ILE CG1 CD1 sing N N 197 ILE CG1 HG12 sing N N 198 ILE CG1 HG13 sing N N 199 ILE CG2 HG21 sing N N 200 ILE CG2 HG22 sing N N 201 ILE CG2 HG23 sing N N 202 ILE CD1 HD11 sing N N 203 ILE CD1 HD12 sing N N 204 ILE CD1 HD13 sing N N 205 ILE OXT HXT sing N N 206 LEU N CA sing N N 207 LEU N H sing N N 208 LEU N H2 sing N N 209 LEU CA C sing N N 210 LEU CA CB sing N N 211 LEU CA HA sing N N 212 LEU C O doub N N 213 LEU C OXT sing N N 214 LEU CB CG sing N N 215 LEU CB HB2 sing N N 216 LEU CB HB3 sing N N 217 LEU CG CD1 sing N N 218 LEU CG CD2 sing N N 219 LEU CG HG sing N N 220 LEU CD1 HD11 sing N N 221 LEU CD1 HD12 sing N N 222 LEU CD1 HD13 sing N N 223 LEU CD2 HD21 sing N N 224 LEU CD2 HD22 sing N N 225 LEU CD2 HD23 sing N N 226 LEU OXT HXT sing N N 227 LYS N CA sing N N 228 LYS N H sing N N 229 LYS N H2 sing N N 230 LYS CA C sing N N 231 LYS CA CB sing N N 232 LYS CA HA sing N N 233 LYS C O doub N N 234 LYS C OXT sing N N 235 LYS CB CG sing N N 236 LYS CB HB2 sing N N 237 LYS CB HB3 sing N N 238 LYS CG CD sing N N 239 LYS CG HG2 sing N N 240 LYS CG HG3 sing N N 241 LYS CD CE sing N N 242 LYS CD HD2 sing N N 243 LYS CD HD3 sing N N 244 LYS CE NZ sing N N 245 LYS CE HE2 sing N N 246 LYS CE HE3 sing N N 247 LYS NZ HZ1 sing N N 248 LYS NZ HZ2 sing N N 249 LYS NZ HZ3 sing N N 250 LYS OXT HXT sing N N 251 MET N CA sing N N 252 MET N H sing N N 253 MET N H2 sing N N 254 MET CA C sing N N 255 MET CA CB sing N N 256 MET CA HA sing N N 257 MET C O doub N N 258 MET C OXT sing N N 259 MET CB CG sing N N 260 MET CB HB2 sing N N 261 MET CB HB3 sing N N 262 MET CG SD sing N N 263 MET CG HG2 sing N N 264 MET CG HG3 sing N N 265 MET SD CE sing N N 266 MET CE HE1 sing N N 267 MET CE HE2 sing N N 268 MET CE HE3 sing N N 269 MET OXT HXT sing N N 270 NDG C1 C2 sing N N 271 NDG C1 O5 sing N N 272 NDG C1 O1 sing N N 273 NDG C1 H1 sing N N 274 NDG C2 C3 sing N N 275 NDG C2 N2 sing N N 276 NDG C2 H2 sing N N 277 NDG C3 C4 sing N N 278 NDG C3 O3 sing N N 279 NDG C3 H3 sing N N 280 NDG C4 C5 sing N N 281 NDG C4 O4 sing N N 282 NDG C4 H4 sing N N 283 NDG C5 C6 sing N N 284 NDG C5 O5 sing N N 285 NDG C5 H5 sing N N 286 NDG C6 O6 sing N N 287 NDG C6 H61 sing N N 288 NDG C6 H62 sing N N 289 NDG C7 C8 sing N N 290 NDG C7 O7 doub N N 291 NDG C7 N2 sing N N 292 NDG C8 H81 sing N N 293 NDG C8 H82 sing N N 294 NDG C8 H83 sing N N 295 NDG O3 HO3 sing N N 296 NDG O4 HO4 sing N N 297 NDG O6 HO6 sing N N 298 NDG N2 HN2 sing N N 299 NDG O1 HO1 sing N N 300 PHE N CA sing N N 301 PHE N H sing N N 302 PHE N H2 sing N N 303 PHE CA C sing N N 304 PHE CA CB sing N N 305 PHE CA HA sing N N 306 PHE C O doub N N 307 PHE C OXT sing N N 308 PHE CB CG sing N N 309 PHE CB HB2 sing N N 310 PHE CB HB3 sing N N 311 PHE CG CD1 doub Y N 312 PHE CG CD2 sing Y N 313 PHE CD1 CE1 sing Y N 314 PHE CD1 HD1 sing N N 315 PHE CD2 CE2 doub Y N 316 PHE CD2 HD2 sing N N 317 PHE CE1 CZ doub Y N 318 PHE CE1 HE1 sing N N 319 PHE CE2 CZ sing Y N 320 PHE CE2 HE2 sing N N 321 PHE CZ HZ sing N N 322 PHE OXT HXT sing N N 323 PIN C1 C2 sing N N 324 PIN C1 S1 sing N N 325 PIN C1 H11 sing N N 326 PIN C1 H12 sing N N 327 PIN C2 N1 sing N N 328 PIN C2 H21 sing N N 329 PIN C2 H22 sing N N 330 PIN N1 C3 sing N N 331 PIN N1 C4 sing N N 332 PIN C3 "C4'" sing N N 333 PIN C3 H31 sing N N 334 PIN C3 H32 sing N N 335 PIN C4 "C3'" sing N N 336 PIN C4 H41 sing N N 337 PIN C4 H42 sing N N 338 PIN "C1'" "C2'" sing N N 339 PIN "C1'" "S1'" sing N N 340 PIN "C1'" "H1'1" sing N N 341 PIN "C1'" "H1'2" sing N N 342 PIN "C2'" "N1'" sing N N 343 PIN "C2'" "H2'1" sing N N 344 PIN "C2'" "H2'2" sing N N 345 PIN "N1'" "C3'" sing N N 346 PIN "N1'" "C4'" sing N N 347 PIN "C3'" "H3'1" sing N N 348 PIN "C3'" "H3'2" sing N N 349 PIN "C4'" "H4'1" sing N N 350 PIN "C4'" "H4'2" sing N N 351 PIN S1 O1 doub N N 352 PIN S1 O2 doub N N 353 PIN S1 O3 sing N N 354 PIN "S1'" "O1'" doub N N 355 PIN "S1'" "O2'" doub N N 356 PIN "S1'" "O3'" sing N N 357 PIN O3 HO3 sing N N 358 PIN "O3'" "HO3'" sing N N 359 PRO N CA sing N N 360 PRO N CD sing N N 361 PRO N H sing N N 362 PRO CA C sing N N 363 PRO CA CB sing N N 364 PRO CA HA sing N N 365 PRO C O doub N N 366 PRO C OXT sing N N 367 PRO CB CG sing N N 368 PRO CB HB2 sing N N 369 PRO CB HB3 sing N N 370 PRO CG CD sing N N 371 PRO CG HG2 sing N N 372 PRO CG HG3 sing N N 373 PRO CD HD2 sing N N 374 PRO CD HD3 sing N N 375 PRO OXT HXT sing N N 376 SER N CA sing N N 377 SER N H sing N N 378 SER N H2 sing N N 379 SER CA C sing N N 380 SER CA CB sing N N 381 SER CA HA sing N N 382 SER C O doub N N 383 SER C OXT sing N N 384 SER CB OG sing N N 385 SER CB HB2 sing N N 386 SER CB HB3 sing N N 387 SER OG HG sing N N 388 SER OXT HXT sing N N 389 SIA C1 C2 sing N N 390 SIA C1 O1A doub N N 391 SIA C1 O1B sing N N 392 SIA C2 C3 sing N N 393 SIA C2 O2 sing N N 394 SIA C2 O6 sing N N 395 SIA C3 C4 sing N N 396 SIA C3 H32 sing N N 397 SIA C3 H31 sing N N 398 SIA C4 C5 sing N N 399 SIA C4 O4 sing N N 400 SIA C4 H4 sing N N 401 SIA C5 C6 sing N N 402 SIA C5 N5 sing N N 403 SIA C5 H5 sing N N 404 SIA C6 C7 sing N N 405 SIA C6 O6 sing N N 406 SIA C6 H6 sing N N 407 SIA C7 C8 sing N N 408 SIA C7 O7 sing N N 409 SIA C7 H7 sing N N 410 SIA C8 C9 sing N N 411 SIA C8 O8 sing N N 412 SIA C8 H8 sing N N 413 SIA C9 O9 sing N N 414 SIA C9 H92 sing N N 415 SIA C9 H91 sing N N 416 SIA C10 C11 sing N N 417 SIA C10 N5 sing N N 418 SIA C10 O10 doub N N 419 SIA C11 H111 sing N N 420 SIA C11 H113 sing N N 421 SIA C11 H112 sing N N 422 SIA N5 HN5 sing N N 423 SIA O1B HO1B sing N N 424 SIA O2 HO2 sing N N 425 SIA O4 HO4 sing N N 426 SIA O7 HO7 sing N N 427 SIA O8 HO8 sing N N 428 SIA O9 HO9 sing N N 429 THR N CA sing N N 430 THR N H sing N N 431 THR N H2 sing N N 432 THR CA C sing N N 433 THR CA CB sing N N 434 THR CA HA sing N N 435 THR C O doub N N 436 THR C OXT sing N N 437 THR CB OG1 sing N N 438 THR CB CG2 sing N N 439 THR CB HB sing N N 440 THR OG1 HG1 sing N N 441 THR CG2 HG21 sing N N 442 THR CG2 HG22 sing N N 443 THR CG2 HG23 sing N N 444 THR OXT HXT sing N N 445 TRP N CA sing N N 446 TRP N H sing N N 447 TRP N H2 sing N N 448 TRP CA C sing N N 449 TRP CA CB sing N N 450 TRP CA HA sing N N 451 TRP C O doub N N 452 TRP C OXT sing N N 453 TRP CB CG sing N N 454 TRP CB HB2 sing N N 455 TRP CB HB3 sing N N 456 TRP CG CD1 doub Y N 457 TRP CG CD2 sing Y N 458 TRP CD1 NE1 sing Y N 459 TRP CD1 HD1 sing N N 460 TRP CD2 CE2 doub Y N 461 TRP CD2 CE3 sing Y N 462 TRP NE1 CE2 sing Y N 463 TRP NE1 HE1 sing N N 464 TRP CE2 CZ2 sing Y N 465 TRP CE3 CZ3 doub Y N 466 TRP CE3 HE3 sing N N 467 TRP CZ2 CH2 doub Y N 468 TRP CZ2 HZ2 sing N N 469 TRP CZ3 CH2 sing Y N 470 TRP CZ3 HZ3 sing N N 471 TRP CH2 HH2 sing N N 472 TRP OXT HXT sing N N 473 TYR N CA sing N N 474 TYR N H sing N N 475 TYR N H2 sing N N 476 TYR CA C sing N N 477 TYR CA CB sing N N 478 TYR CA HA sing N N 479 TYR C O doub N N 480 TYR C OXT sing N N 481 TYR CB CG sing N N 482 TYR CB HB2 sing N N 483 TYR CB HB3 sing N N 484 TYR CG CD1 doub Y N 485 TYR CG CD2 sing Y N 486 TYR CD1 CE1 sing Y N 487 TYR CD1 HD1 sing N N 488 TYR CD2 CE2 doub Y N 489 TYR CD2 HD2 sing N N 490 TYR CE1 CZ doub Y N 491 TYR CE1 HE1 sing N N 492 TYR CE2 CZ sing Y N 493 TYR CE2 HE2 sing N N 494 TYR CZ OH sing N N 495 TYR OH HH sing N N 496 TYR OXT HXT sing N N 497 VAL N CA sing N N 498 VAL N H sing N N 499 VAL N H2 sing N N 500 VAL CA C sing N N 501 VAL CA CB sing N N 502 VAL CA HA sing N N 503 VAL C O doub N N 504 VAL C OXT sing N N 505 VAL CB CG1 sing N N 506 VAL CB CG2 sing N N 507 VAL CB HB sing N N 508 VAL CG1 HG11 sing N N 509 VAL CG1 HG12 sing N N 510 VAL CG1 HG13 sing N N 511 VAL CG2 HG21 sing N N 512 VAL CG2 HG22 sing N N 513 VAL CG2 HG23 sing N N 514 VAL OXT HXT sing N N 515 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NDG 1 B NDG 1 A NAG 253 n B 2 GAL 2 B GAL 2 A GAL 252 n B 2 SIA 3 B SIA 3 A SIA 251 n B 2 FUC 4 B FUC 4 A FUC 254 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NDG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAca NDG 'COMMON NAME' GMML 1.0 N-acetyl-a-D-glucopyranosamine NDG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GlcpNAc NDG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc SIA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DNeup5Aca SIA 'COMMON NAME' GMML 1.0 'N-acetyl-a-D-neuraminic acid' SIA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Neup5Ac SIA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Neu5Ac # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAca1-ROH' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/4,4,3/[a2122h-1a_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a3-b1_a4-c1_c3-d2' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-GlcpNAc]{[(3+1)][a-L-Fucp]{}[(4+1)][b-D-Galp]{[(3+2)][a-D-Neup5Ac]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 GAL C1 O1 1 NDG O4 HO4 sing ? 2 2 3 SIA C2 O2 2 GAL O3 HO3 sing ? 3 2 4 FUC C1 O1 1 NDG O3 HO3 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NDG 1 n 2 GAL 2 n 2 SIA 3 n 2 FUC 4 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 ;PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID) ; PIN 4 'CHLORIDE ION' CL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4DXF _pdbx_initial_refinement_model.details 'PDB ENTRY 4DXF' #