HEADER ISOMERASE 27-FEB-12 4DXK TITLE CRYSTAL STRUCTURE OF AN ENOLASE (MANDELATE RACEMASE SUBGROUP, TARGET TITLE 2 EFI-502086) FROM AGROBACTERIUM TUMEFACIENS, WITH A SUCCINIMIDE TITLE 3 RESIDUE, NA AND PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANDELATE RACEMASE / MUCONATE LACTONIZING ENZYME FAMILY COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 EC: 5.1.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 GENE: ATU0270; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ENOLASE, MANDELATE RACEMASE SUBGROUP, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, ALPHA-BETA-8-BARREL, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,J.T.BOUVIER,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO, AUTHOR 2 S.R.WASSERMAN,S.SOJITRA,H.J.IMKER,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION AUTHOR 3 INITIATIVE (EFI) REVDAT 3 15-NOV-23 4DXK 1 DBREF LINK ATOM REVDAT 2 13-SEP-23 4DXK 1 REMARK SEQADV LINK REVDAT 1 18-APR-12 4DXK 0 JRNL AUTH M.W.VETTING,J.T.BOUVIER,R.TORO,R.BHOSLE,N.F.AL OBAIDI, JRNL AUTH 2 L.L.MORISCO,S.R.WASSERMAN,S.SOJITRA,H.J.IMKER,J.A.GERLT, JRNL AUTH 3 S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF AN ENOLASE (MANDELATE RACEMASE JRNL TITL 2 SUBGROUP, TARGET EFI-502086) FROM AGROBACTERIUM TUMEFACIENS, JRNL TITL 3 WITH A SUCCINIMIDE RESIDUE, NA AND PHOSPHATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 112823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 5653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.4597 - 3.8755 0.99 3807 206 0.1558 0.1831 REMARK 3 2 3.8755 - 3.0795 1.00 3674 188 0.1461 0.1635 REMARK 3 3 3.0795 - 2.6912 1.00 3630 205 0.1523 0.1709 REMARK 3 4 2.6912 - 2.4456 1.00 3593 212 0.1531 0.1537 REMARK 3 5 2.4456 - 2.2706 1.00 3588 200 0.1465 0.1690 REMARK 3 6 2.2706 - 2.1368 1.00 3586 198 0.1394 0.1507 REMARK 3 7 2.1368 - 2.0299 1.00 3571 223 0.1426 0.1548 REMARK 3 8 2.0299 - 1.9416 1.00 3607 154 0.1452 0.1592 REMARK 3 9 1.9416 - 1.8669 1.00 3557 203 0.1416 0.1466 REMARK 3 10 1.8669 - 1.8026 1.00 3568 206 0.1452 0.1710 REMARK 3 11 1.8026 - 1.7462 1.00 3568 171 0.1394 0.1642 REMARK 3 12 1.7462 - 1.6963 1.00 3578 171 0.1404 0.1555 REMARK 3 13 1.6963 - 1.6517 1.00 3539 190 0.1348 0.1593 REMARK 3 14 1.6517 - 1.6114 1.00 3598 182 0.1342 0.1374 REMARK 3 15 1.6114 - 1.5748 1.00 3553 170 0.1375 0.1460 REMARK 3 16 1.5748 - 1.5413 1.00 3571 190 0.1330 0.1342 REMARK 3 17 1.5413 - 1.5105 1.00 3546 192 0.1390 0.1547 REMARK 3 18 1.5105 - 1.4820 1.00 3539 178 0.1424 0.1290 REMARK 3 19 1.4820 - 1.4555 1.00 3551 184 0.1440 0.1526 REMARK 3 20 1.4555 - 1.4309 1.00 3558 197 0.1516 0.1539 REMARK 3 21 1.4309 - 1.4078 1.00 3533 181 0.1625 0.1771 REMARK 3 22 1.4078 - 1.3861 1.00 3535 192 0.1710 0.1810 REMARK 3 23 1.3861 - 1.3657 1.00 3541 170 0.1834 0.2013 REMARK 3 24 1.3657 - 1.3465 1.00 3547 175 0.1901 0.2094 REMARK 3 25 1.3465 - 1.3283 1.00 3533 190 0.2011 0.2110 REMARK 3 26 1.3283 - 1.3111 1.00 3542 192 0.2183 0.2452 REMARK 3 27 1.3111 - 1.2947 1.00 3545 190 0.2338 0.2393 REMARK 3 28 1.2947 - 1.2791 1.00 3512 184 0.2549 0.2531 REMARK 3 29 1.2791 - 1.2642 1.00 3559 160 0.2721 0.2697 REMARK 3 30 1.2642 - 1.2500 1.00 3541 199 0.2985 0.3038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 52.20 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3160 REMARK 3 ANGLE : 1.158 4326 REMARK 3 CHIRALITY : 0.074 477 REMARK 3 PLANARITY : 0.006 564 REMARK 3 DIHEDRAL : 13.079 1173 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1:24) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3110 12.6558 3.8849 REMARK 3 T TENSOR REMARK 3 T11: 0.0971 T22: 0.0845 REMARK 3 T33: 0.1276 T12: -0.0117 REMARK 3 T13: 0.0107 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.6645 L22: 1.0485 REMARK 3 L33: 1.9162 L12: -0.5866 REMARK 3 L13: -1.2631 L23: 0.7902 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: -0.0802 S13: -0.1202 REMARK 3 S21: 0.0492 S22: -0.0098 S23: 0.1056 REMARK 3 S31: 0.0794 S32: -0.0618 S33: 0.0496 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 25:155) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1340 18.9077 2.5106 REMARK 3 T TENSOR REMARK 3 T11: 0.0847 T22: 0.0662 REMARK 3 T33: 0.0949 T12: -0.0020 REMARK 3 T13: 0.0062 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.4362 L22: 0.3389 REMARK 3 L33: 0.2375 L12: -0.0470 REMARK 3 L13: 0.0361 L23: -0.0099 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: -0.0103 S13: -0.0621 REMARK 3 S21: 0.0040 S22: -0.0008 S23: 0.0285 REMARK 3 S31: 0.0229 S32: -0.0120 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 156:210) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1335 38.5310 30.6788 REMARK 3 T TENSOR REMARK 3 T11: 0.2114 T22: 0.1952 REMARK 3 T33: 0.0840 T12: 0.0389 REMARK 3 T13: 0.0405 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 0.3124 L22: 0.4636 REMARK 3 L33: 0.1734 L12: -0.3133 REMARK 3 L13: 0.0713 L23: -0.0220 REMARK 3 S TENSOR REMARK 3 S11: -0.0966 S12: -0.2281 S13: -0.1196 REMARK 3 S21: 0.2780 S22: 0.0946 S23: 0.2660 REMARK 3 S31: 0.0597 S32: 0.0088 S33: -0.0425 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 211:335) REMARK 3 ORIGIN FOR THE GROUP (A): 46.4716 36.3005 12.8606 REMARK 3 T TENSOR REMARK 3 T11: 0.0931 T22: 0.0860 REMARK 3 T33: 0.0720 T12: 0.0029 REMARK 3 T13: -0.0019 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.1752 L22: 0.3322 REMARK 3 L33: 0.1519 L12: -0.0396 REMARK 3 L13: -0.0126 L23: 0.0334 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: -0.0310 S13: -0.0277 REMARK 3 S21: 0.0246 S22: 0.0127 S23: 0.0003 REMARK 3 S31: -0.0240 S32: 0.0017 S33: -0.0035 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 336:356) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0133 19.5100 20.2487 REMARK 3 T TENSOR REMARK 3 T11: 0.1695 T22: 0.2167 REMARK 3 T33: 0.1609 T12: -0.0201 REMARK 3 T13: 0.0416 T23: 0.0522 REMARK 3 L TENSOR REMARK 3 L11: 0.9782 L22: 0.9742 REMARK 3 L33: 0.0752 L12: 0.9326 REMARK 3 L13: 0.2395 L23: 0.1891 REMARK 3 S TENSOR REMARK 3 S11: 0.0853 S12: -0.2939 S13: -0.0545 REMARK 3 S21: 0.2436 S22: -0.0679 S23: 0.1601 REMARK 3 S31: 0.0823 S32: -0.2047 S33: 0.0142 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 357:400) REMARK 3 ORIGIN FOR THE GROUP (A): 37.5968 10.1593 12.4229 REMARK 3 T TENSOR REMARK 3 T11: 0.1377 T22: 0.1243 REMARK 3 T33: 0.1458 T12: -0.0150 REMARK 3 T13: 0.0163 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 0.6528 L22: 0.3940 REMARK 3 L33: 0.2803 L12: -0.0060 REMARK 3 L13: 0.1278 L23: 0.0124 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: -0.1844 S13: -0.2208 REMARK 3 S21: 0.1043 S22: 0.0003 S23: 0.0952 REMARK 3 S31: 0.1093 S32: -0.1332 S33: -0.0236 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DXK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112825 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : 0.10300 REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.89800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2POD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM TRIS, PH 8.0, 200 MM REMARK 280 NACL, 5 MM MG; RESERVOIR (0.2 M NACL, 0.1 M NAPO4, CITRATE ACID REMARK 280 PH 4.2, 10% PEG3000); CRYOPROTECTION (RESERVOIR, + 20% GLYCEROL REMARK 280 AND 50 MM MGCL), SITTING DROP VAPOR DIFFUCTION, TEMPERATURE 298K, REMARK 280 PH 4.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 55.77000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 55.77000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 65.32500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 55.77000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 55.77000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 65.32500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 55.77000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 55.77000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 65.32500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 55.77000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 55.77000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 65.32500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 55.77000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.77000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 65.32500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 55.77000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 55.77000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 65.32500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 55.77000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 55.77000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 65.32500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 55.77000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 55.77000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 65.32500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 41670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 84800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -218.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 111.54000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 111.54000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 111.54000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 111.54000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 111.54000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 111.54000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 111.54000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 111.54000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 601 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 602 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 757 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 121 REMARK 465 ALA A 122 REMARK 465 GLY A 123 REMARK 465 THR A 124 REMARK 465 GLU A 125 REMARK 465 TYR A 126 REMARK 465 ILE A 127 REMARK 465 LYS A 128 REMARK 465 LYS A 129 REMARK 465 ALA A 130 REMARK 465 THR A 131 REMARK 465 GLY A 132 REMARK 465 GLN A 133 REMARK 465 GLN A 134 REMARK 465 THR A 135 REMARK 465 ALA A 136 REMARK 465 ASN A 137 REMARK 465 TYR A 138 REMARK 465 GLY A 139 REMARK 465 LEU A 140 REMARK 465 SER A 141 REMARK 465 GLY A 142 REMARK 465 GLY A 143 REMARK 465 LYS A 144 REMARK 465 ASP A 145 REMARK 465 TYR A 146 REMARK 465 ASP A 147 REMARK 465 ASP A 148 REMARK 465 LEU A 149 REMARK 465 ASN A 150 REMARK 465 GLY A 151 REMARK 465 PHE A 152 REMARK 465 LEU A 153 REMARK 465 HIS A 154 REMARK 465 TYR A 349 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 847 O HOH A 871 2.10 REMARK 500 O HOH A 761 O HOH A 815 2.12 REMARK 500 NE2 HIS A 312 O HOH A 847 2.15 REMARK 500 OE1 GLU A 181 O HOH A 922 2.18 REMARK 500 O HOH A 855 O HOH A 940 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 320 C CYS A 320 O 0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 36 134.39 86.40 REMARK 500 MET A 247 46.20 -93.20 REMARK 500 SER A 272 155.47 81.48 REMARK 500 SNN A 319 -133.00 -125.59 REMARK 500 THR A 321 -100.18 -108.56 REMARK 500 ASP A 383 63.04 28.46 REMARK 500 ASP A 383 63.62 28.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 216 OE2 REMARK 620 2 GLU A 242 OE2 92.2 REMARK 620 3 GLU A 268 OE1 177.3 90.2 REMARK 620 4 PO4 A 501 O1 89.5 99.5 91.2 REMARK 620 5 HOH A 775 O 82.5 91.7 96.2 166.5 REMARK 620 6 HOH A 875 O 89.7 177.5 87.8 82.0 87.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DN1 RELATED DB: PDB REMARK 900 RELATED ID: 4DX3 RELATED DB: PDB REMARK 900 RELATED ID: EFI-502086 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 319 AND 320 STARTED OUT AS ASP AND CYS. THE SIDECHAIN OF REMARK 999 ASP ATTACKS THE AMIDE OF CYS TO FORM A SUCCINIMIDE RESIDUE SNN. DBREF 4DXK A 1 400 UNP Q7D1T6 Q7D1T6_AGRT5 1 400 SEQADV 4DXK SNN A 319 UNP Q7D1T6 ASP 319 MODIFIED RESIDUE SEQRES 1 A 400 MET LYS ILE THR LYS LEU GLU THR VAL ARG VAL ALA GLU SEQRES 2 A 400 ARG THR ASN LEU LEU TRP VAL LEU VAL HIS THR ASP GLU SEQRES 3 A 400 GLY ILE THR GLY LEU GLY GLU THR PHE PHE GLY ALA GLU SEQRES 4 A 400 THR VAL GLU THR TYR VAL HIS GLU TYR ILE ALA PRO ARG SEQRES 5 A 400 VAL ILE GLY ARG ASP PRO LEU GLN ILE ASP LEU LEU ALA SEQRES 6 A 400 GLN ASP LEU VAL GLY TYR LEU GLY PHE ARG SER SER GLY SEQRES 7 A 400 ALA GLU VAL ARG GLY ASN SER ALA PHE ASP ILE ALA LEU SEQRES 8 A 400 TRP ASP ILE PHE GLY LYS ALA THR ASN GLN PRO ILE ALA SEQRES 9 A 400 GLN LEU LEU GLY GLY PHE SER ARG ARG GLU ILE ARG THR SEQRES 10 A 400 TYR ASN THR CYS ALA GLY THR GLU TYR ILE LYS LYS ALA SEQRES 11 A 400 THR GLY GLN GLN THR ALA ASN TYR GLY LEU SER GLY GLY SEQRES 12 A 400 LYS ASP TYR ASP ASP LEU ASN GLY PHE LEU HIS ARG ALA SEQRES 13 A 400 ASP GLU LEU ALA HIS SER LEU LEU GLU ASP GLY ILE THR SEQRES 14 A 400 ALA MET LYS ILE TRP PRO PHE ASP ALA ALA ALA GLU LYS SEQRES 15 A 400 THR ARG GLY GLN TYR ILE SER MET PRO ASP LEU LYS SER SEQRES 16 A 400 ALA LEU GLU PRO PHE GLU LYS ILE ARG LYS ALA VAL GLY SEQRES 17 A 400 ASP LYS MET ASP ILE MET VAL GLU PHE HIS SER MET TRP SEQRES 18 A 400 GLN LEU LEU PRO ALA MET GLN ILE ALA LYS ALA LEU THR SEQRES 19 A 400 PRO TYR GLN THR PHE TRP HIS GLU ASP PRO ILE LYS MET SEQRES 20 A 400 ASP SER LEU SER SER LEU THR ARG TYR ALA ALA VAL SER SEQRES 21 A 400 PRO ALA PRO ILE SER ALA SER GLU THR LEU GLY SER ARG SEQRES 22 A 400 TRP ALA PHE ARG ASP LEU LEU GLU THR GLY ALA ALA GLY SEQRES 23 A 400 VAL VAL MET LEU ASP ILE SER TRP CYS GLY GLY LEU SER SEQRES 24 A 400 GLU ALA ARG LYS ILE ALA SER MET ALA GLU ALA TRP HIS SEQRES 25 A 400 LEU PRO VAL ALA PRO HIS SNN CYS THR GLY PRO VAL VAL SEQRES 26 A 400 LEU CYS ALA SER THR HIS LEU SER LEU ASN ALA PRO ASN SEQRES 27 A 400 ALA LEU VAL GLN GLU SER VAL ARG ALA PHE TYR LYS THR SEQRES 28 A 400 TRP TYR ARG ASP LEU VAL THR ALA LEU PRO GLU VAL LYS SEQRES 29 A 400 ASN GLY MET ILE THR VAL PRO PRO GLY ALA GLY LEU GLY SEQRES 30 A 400 MET GLU LEU HIS PRO ASP ILE GLU LYS THR PHE THR VAL SEQRES 31 A 400 SER ARG ARG PHE SER ASP ALA ALA SER ILE MODRES 4DXK SNN A 319 ASN L-3-AMINOSUCCINIMIDE HET SNN A 319 7 HET PO4 A 501 5 HET NA A 502 1 HETNAM SNN L-3-AMINOSUCCINIMIDE HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION FORMUL 1 SNN C4 H6 N2 O2 FORMUL 2 PO4 O4 P 3- FORMUL 3 NA NA 1+ FORMUL 4 HOH *390(H2 O) HELIX 1 1 GLY A 37 TYR A 48 1 12 HELIX 2 2 TYR A 48 ILE A 54 1 7 HELIX 3 3 GLN A 60 VAL A 69 1 10 HELIX 4 4 GLY A 78 ASN A 100 1 23 HELIX 5 5 PRO A 102 LEU A 107 1 6 HELIX 6 6 ALA A 156 ASP A 166 1 11 HELIX 7 7 PHE A 176 ARG A 184 1 9 HELIX 8 8 SER A 189 GLY A 208 1 20 HELIX 9 9 ASP A 209 MET A 211 5 3 HELIX 10 10 GLN A 222 LEU A 233 1 12 HELIX 11 11 THR A 234 GLN A 237 5 4 HELIX 12 12 SER A 249 SER A 251 5 3 HELIX 13 13 SER A 252 SER A 260 1 9 HELIX 14 14 GLY A 271 THR A 282 1 12 HELIX 15 15 GLY A 296 TRP A 311 1 16 HELIX 16 16 GLY A 322 ALA A 336 1 15 HELIX 17 17 TRP A 352 VAL A 357 1 6 HELIX 18 18 ASP A 383 THR A 387 5 5 SHEET 1 A 4 GLY A 30 PHE A 35 0 SHEET 2 A 4 LEU A 17 THR A 24 -1 N VAL A 20 O GLY A 32 SHEET 3 A 4 ILE A 3 VAL A 11 -1 N GLU A 7 O LEU A 21 SHEET 4 A 4 VAL A 390 ASP A 396 -1 O ARG A 393 N THR A 8 SHEET 1 B 4 GLN A 342 GLU A 343 0 SHEET 2 B 4 ILE A 115 TYR A 118 1 N ARG A 116 O GLN A 342 SHEET 3 B 4 MET A 367 THR A 369 -1 O ILE A 368 N ILE A 115 SHEET 4 B 4 GLU A 362 LYS A 364 -1 N LYS A 364 O MET A 367 SHEET 1 C 6 ALA A 170 ILE A 173 0 SHEET 2 C 6 ASP A 212 GLU A 216 1 O MET A 214 N MET A 171 SHEET 3 C 6 TRP A 240 GLU A 242 1 O GLU A 242 N VAL A 215 SHEET 4 C 6 ILE A 264 ALA A 266 1 O SER A 265 N HIS A 241 SHEET 5 C 6 VAL A 287 LEU A 290 1 O VAL A 287 N ALA A 266 SHEET 6 C 6 VAL A 315 PRO A 317 1 O ALA A 316 N VAL A 288 LINK C HIS A 318 N SNN A 319 1555 1555 1.36 LINK C SNN A 319 N CYS A 320 1555 1555 1.42 LINK C5 SNN A 319 N CYS A 320 1555 1555 1.42 LINK OE2 GLU A 216 NA NA A 502 1555 1555 2.16 LINK OE2 GLU A 242 NA NA A 502 1555 1555 2.32 LINK OE1 GLU A 268 NA NA A 502 1555 1555 2.34 LINK O1 PO4 A 501 NA NA A 502 1555 1555 2.07 LINK NA NA A 502 O HOH A 775 1555 1555 2.33 LINK NA NA A 502 O HOH A 875 1555 1555 2.36 CISPEP 1 ALA A 266 SER A 267 0 -15.79 SITE 1 AC1 11 THR A 120 LYS A 172 GLU A 216 HIS A 218 SITE 2 AC1 11 GLU A 242 GLU A 268 HIS A 318 GLU A 343 SITE 3 AC1 11 NA A 502 HOH A 875 HOH A 948 SITE 1 AC2 6 GLU A 216 GLU A 242 GLU A 268 PO4 A 501 SITE 2 AC2 6 HOH A 775 HOH A 875 CRYST1 111.540 111.540 130.650 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008965 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008965 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007654 0.00000