data_4DXT # _entry.id 4DXT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4DXT RCSB RCSB070917 WWPDB D_1000070917 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4DXR . unspecified PDB 4DXS . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4DXT _pdbx_database_status.recvd_initial_deposition_date 2012-02-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sosa, B.' 1 'Schwartz, T.U.' 2 # _citation.id primary _citation.title 'LINC Complexes Form by Binding of Three KASH Peptides to Domain Interfaces of Trimeric SUN Proteins.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 149 _citation.page_first 1035 _citation.page_last 1047 _citation.year 2012 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22632968 _citation.pdbx_database_id_DOI 10.1016/j.cell.2012.03.046 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Sosa, B.A.' 1 primary 'Rothballer, A.' 2 primary 'Kutay, U.' 3 primary 'Schwartz, T.U.' 4 # _cell.entry_id 4DXT _cell.length_a 79.580 _cell.length_b 79.580 _cell.length_c 199.050 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4DXT _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'SUN domain-containing protein 2' 22136.816 1 ? ? 'SUN domain (UNP residues 522-717)' ? 2 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 3 water nat water 18.015 113 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein unc-84 homolog B, Rab5-interacting protein, Rab5IP, Sad1/unc-84 protein-like 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPGVTEEQVHHIVKQALQRYSEDRIGLADYALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDVHPG NCWAFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHF QAPTMATYQVVELRILTNWGHPEYTCIYRFRVHGEPAH ; _entity_poly.pdbx_seq_one_letter_code_can ;GPGVTEEQVHHIVKQALQRYSEDRIGLADYALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDVHPG NCWAFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHF QAPTMATYQVVELRILTNWGHPEYTCIYRFRVHGEPAH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 VAL n 1 5 THR n 1 6 GLU n 1 7 GLU n 1 8 GLN n 1 9 VAL n 1 10 HIS n 1 11 HIS n 1 12 ILE n 1 13 VAL n 1 14 LYS n 1 15 GLN n 1 16 ALA n 1 17 LEU n 1 18 GLN n 1 19 ARG n 1 20 TYR n 1 21 SER n 1 22 GLU n 1 23 ASP n 1 24 ARG n 1 25 ILE n 1 26 GLY n 1 27 LEU n 1 28 ALA n 1 29 ASP n 1 30 TYR n 1 31 ALA n 1 32 LEU n 1 33 GLU n 1 34 SER n 1 35 GLY n 1 36 GLY n 1 37 ALA n 1 38 SER n 1 39 VAL n 1 40 ILE n 1 41 SER n 1 42 THR n 1 43 ARG n 1 44 CYS n 1 45 SER n 1 46 GLU n 1 47 THR n 1 48 TYR n 1 49 GLU n 1 50 THR n 1 51 LYS n 1 52 THR n 1 53 ALA n 1 54 LEU n 1 55 LEU n 1 56 SER n 1 57 LEU n 1 58 PHE n 1 59 GLY n 1 60 ILE n 1 61 PRO n 1 62 LEU n 1 63 TRP n 1 64 TYR n 1 65 HIS n 1 66 SER n 1 67 GLN n 1 68 SER n 1 69 PRO n 1 70 ARG n 1 71 VAL n 1 72 ILE n 1 73 LEU n 1 74 GLN n 1 75 PRO n 1 76 ASP n 1 77 VAL n 1 78 HIS n 1 79 PRO n 1 80 GLY n 1 81 ASN n 1 82 CYS n 1 83 TRP n 1 84 ALA n 1 85 PHE n 1 86 GLN n 1 87 GLY n 1 88 PRO n 1 89 GLN n 1 90 GLY n 1 91 PHE n 1 92 ALA n 1 93 VAL n 1 94 VAL n 1 95 ARG n 1 96 LEU n 1 97 SER n 1 98 ALA n 1 99 ARG n 1 100 ILE n 1 101 ARG n 1 102 PRO n 1 103 THR n 1 104 ALA n 1 105 VAL n 1 106 THR n 1 107 LEU n 1 108 GLU n 1 109 HIS n 1 110 VAL n 1 111 PRO n 1 112 LYS n 1 113 ALA n 1 114 LEU n 1 115 SER n 1 116 PRO n 1 117 ASN n 1 118 SER n 1 119 THR n 1 120 ILE n 1 121 SER n 1 122 SER n 1 123 ALA n 1 124 PRO n 1 125 LYS n 1 126 ASP n 1 127 PHE n 1 128 ALA n 1 129 ILE n 1 130 PHE n 1 131 GLY n 1 132 PHE n 1 133 ASP n 1 134 GLU n 1 135 ASP n 1 136 LEU n 1 137 GLN n 1 138 GLN n 1 139 GLU n 1 140 GLY n 1 141 THR n 1 142 LEU n 1 143 LEU n 1 144 GLY n 1 145 LYS n 1 146 PHE n 1 147 THR n 1 148 TYR n 1 149 ASP n 1 150 GLN n 1 151 ASP n 1 152 GLY n 1 153 GLU n 1 154 PRO n 1 155 ILE n 1 156 GLN n 1 157 THR n 1 158 PHE n 1 159 HIS n 1 160 PHE n 1 161 GLN n 1 162 ALA n 1 163 PRO n 1 164 THR n 1 165 MET n 1 166 ALA n 1 167 THR n 1 168 TYR n 1 169 GLN n 1 170 VAL n 1 171 VAL n 1 172 GLU n 1 173 LEU n 1 174 ARG n 1 175 ILE n 1 176 LEU n 1 177 THR n 1 178 ASN n 1 179 TRP n 1 180 GLY n 1 181 HIS n 1 182 PRO n 1 183 GLU n 1 184 TYR n 1 185 THR n 1 186 CYS n 1 187 ILE n 1 188 TYR n 1 189 ARG n 1 190 PHE n 1 191 ARG n 1 192 VAL n 1 193 HIS n 1 194 GLY n 1 195 GLU n 1 196 PRO n 1 197 ALA n 1 198 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SUN2, FRIGG, KIAA0668, RAB5IP, UNC84B' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SUN2_HUMAN _struct_ref.pdbx_db_accession Q9UH99 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GVTEEQVHHIVKQALQRYSEDRIGLADYALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDVHPGNC WAFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQA PTMATYQVVELRILTNWGHPEYTCIYRFRVHGEPAH ; _struct_ref.pdbx_align_begin 522 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4DXT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 198 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UH99 _struct_ref_seq.db_align_beg 522 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 717 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 522 _struct_ref_seq.pdbx_auth_seq_align_end 717 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4DXT GLY A 1 ? UNP Q9UH99 ? ? 'EXPRESSION TAG' 520 1 1 4DXT PRO A 2 ? UNP Q9UH99 ? ? 'EXPRESSION TAG' 521 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4DXT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.74 _exptl_crystal.density_percent_sol 55.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '16% PEG3350, 0.2 M potassium thiocyanate, VAPOR DIFFUSION, HANGING DROP, temperature 291K, pH 8.0' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-10-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_wavelength 0.9795 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4DXT _reflns.observed_criterion_sigma_I 3.500 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 56.700 _reflns.d_resolution_high 2.200 _reflns.number_obs 12305 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.048 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.3 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.57 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.pdbx_redundancy 6.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4DXT _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12305 _refine.ls_number_reflns_all 12330 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 56.66 _refine.ls_d_res_high 2.22 _refine.ls_percent_reflns_obs 99.7 _refine.ls_R_factor_obs 0.175 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.169 _refine.ls_R_factor_R_free 0.226 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.2 _refine.ls_number_reflns_R_free 1250 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 51.694 _refine.aniso_B[1][1] 0.83 _refine.aniso_B[2][2] 0.83 _refine.aniso_B[3][3] -1.24 _refine.aniso_B[1][2] 0.41 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.32 _refine.solvent_model_param_bsol 53.87 _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.86 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.34 _refine.pdbx_overall_phase_error 23.92 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1565 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 113 _refine_hist.number_atoms_total 1679 _refine_hist.d_res_high 2.22 _refine_hist.d_res_low 56.66 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.017 ? ? 1646 'X-RAY DIFFRACTION' ? f_angle_d 1.914 ? ? 2255 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.757 ? ? 598 'X-RAY DIFFRACTION' ? f_chiral_restr 0.127 ? ? 243 'X-RAY DIFFRACTION' ? f_plane_restr 0.010 ? ? 1300 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 4DXT _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? # _struct.entry_id 4DXT _struct.title 'Human SUN2 (AA 522-717)' _struct.pdbx_descriptor 'SUN domain-containing protein 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DXT _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text 'beta-sandwich, LINC complex, STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 5 ? GLU A 22 ? THR A 524 GLU A 541 1 ? 18 HELX_P HELX_P2 2 LEU A 32 ? GLY A 36 ? LEU A 551 GLY A 555 5 ? 5 HELX_P HELX_P3 3 LYS A 51 ? SER A 56 ? LYS A 570 SER A 575 1 ? 6 HELX_P HELX_P4 4 SER A 68 ? GLN A 74 ? SER A 587 GLN A 593 5 ? 7 HELX_P HELX_P5 5 PRO A 111 ? THR A 119 ? PRO A 630 THR A 638 5 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 82 SG ? ? ? 1_555 A CYS 186 SG A ? A CYS 601 A CYS 705 1_555 ? ? ? ? ? ? ? 2.075 ? disulf2 disulf ? ? A CYS 82 SG ? ? ? 1_555 A CYS 186 SG B ? A CYS 601 A CYS 705 1_555 ? ? ? ? ? ? ? 2.171 ? metalc1 metalc ? ? A VAL 71 O ? ? ? 1_555 B K . K ? ? A VAL 590 A K 1001 1_555 ? ? ? ? ? ? ? 2.731 ? metalc2 metalc ? ? A TYR 188 O ? ? ? 1_555 B K . K ? ? A TYR 707 A K 1001 1_555 ? ? ? ? ? ? ? 2.688 ? metalc3 metalc ? ? A ASP 76 O ? ? ? 1_555 B K . K ? ? A ASP 595 A K 1001 1_555 ? ? ? ? ? ? ? 2.803 ? metalc4 metalc ? ? A GLN 74 O ? ? ? 1_555 B K . K ? ? A GLN 593 A K 1001 1_555 ? ? ? ? ? ? ? 2.842 ? metalc5 metalc ? ? A ASN 81 O ? ? ? 1_555 B K . K ? ? A ASN 600 A K 1001 1_555 ? ? ? ? ? ? ? 3.028 ? metalc6 metalc ? ? B K . K ? ? ? 1_555 C HOH . O ? ? A K 1001 A HOH 1124 1_555 ? ? ? ? ? ? ? 3.036 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 38 ? CYS A 44 ? SER A 557 CYS A 563 A 2 GLY A 90 ? GLU A 108 ? GLY A 609 GLU A 627 A 3 ILE A 155 ? HIS A 159 ? ILE A 674 HIS A 678 B 1 THR A 141 ? THR A 147 ? THR A 660 THR A 666 B 2 ASP A 126 ? PHE A 132 ? ASP A 645 PHE A 651 B 3 TYR A 168 ? ILE A 175 ? TYR A 687 ILE A 694 B 4 GLY A 90 ? GLU A 108 ? GLY A 609 GLU A 627 B 5 ARG A 189 ? GLU A 195 ? ARG A 708 GLU A 714 C 1 TRP A 83 ? GLN A 86 ? TRP A 602 GLN A 605 C 2 TYR A 184 ? ILE A 187 ? TYR A 703 ILE A 706 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 38 ? N SER A 557 O ARG A 95 ? O ARG A 614 A 2 3 N VAL A 105 ? N VAL A 624 O PHE A 158 ? O PHE A 677 B 1 2 O LEU A 143 ? O LEU A 662 N ILE A 129 ? N ILE A 648 B 2 3 N ALA A 128 ? N ALA A 647 O ARG A 174 ? O ARG A 693 B 3 4 O VAL A 171 ? O VAL A 690 N VAL A 94 ? N VAL A 613 B 4 5 N THR A 106 ? N THR A 625 O ARG A 191 ? O ARG A 710 C 1 2 N TRP A 83 ? N TRP A 602 O ILE A 187 ? O ILE A 706 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE K A 1001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 VAL A 71 ? VAL A 590 . ? 1_555 ? 2 AC1 6 GLN A 74 ? GLN A 593 . ? 1_555 ? 3 AC1 6 ASP A 76 ? ASP A 595 . ? 1_555 ? 4 AC1 6 ASN A 81 ? ASN A 600 . ? 1_555 ? 5 AC1 6 TYR A 188 ? TYR A 707 . ? 1_555 ? 6 AC1 6 HOH C . ? HOH A 1124 . ? 1_555 ? # _database_PDB_matrix.entry_id 4DXT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4DXT _atom_sites.fract_transf_matrix[1][1] 0.012566 _atom_sites.fract_transf_matrix[1][2] 0.007255 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014510 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005024 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 520 520 GLY GLY A . n A 1 2 PRO 2 521 521 PRO PRO A . n A 1 3 GLY 3 522 522 GLY GLY A . n A 1 4 VAL 4 523 523 VAL VAL A . n A 1 5 THR 5 524 524 THR THR A . n A 1 6 GLU 6 525 525 GLU GLU A . n A 1 7 GLU 7 526 526 GLU GLU A . n A 1 8 GLN 8 527 527 GLN GLN A . n A 1 9 VAL 9 528 528 VAL VAL A . n A 1 10 HIS 10 529 529 HIS HIS A . n A 1 11 HIS 11 530 530 HIS HIS A . n A 1 12 ILE 12 531 531 ILE ILE A . n A 1 13 VAL 13 532 532 VAL VAL A . n A 1 14 LYS 14 533 533 LYS LYS A . n A 1 15 GLN 15 534 534 GLN GLN A . n A 1 16 ALA 16 535 535 ALA ALA A . n A 1 17 LEU 17 536 536 LEU LEU A . n A 1 18 GLN 18 537 537 GLN GLN A . n A 1 19 ARG 19 538 538 ARG ARG A . n A 1 20 TYR 20 539 539 TYR TYR A . n A 1 21 SER 21 540 540 SER SER A . n A 1 22 GLU 22 541 541 GLU GLU A . n A 1 23 ASP 23 542 542 ASP ASP A . n A 1 24 ARG 24 543 543 ARG ARG A . n A 1 25 ILE 25 544 544 ILE ILE A . n A 1 26 GLY 26 545 545 GLY GLY A . n A 1 27 LEU 27 546 546 LEU LEU A . n A 1 28 ALA 28 547 547 ALA ALA A . n A 1 29 ASP 29 548 548 ASP ASP A . n A 1 30 TYR 30 549 549 TYR TYR A . n A 1 31 ALA 31 550 550 ALA ALA A . n A 1 32 LEU 32 551 551 LEU LEU A . n A 1 33 GLU 33 552 552 GLU GLU A . n A 1 34 SER 34 553 553 SER SER A . n A 1 35 GLY 35 554 554 GLY GLY A . n A 1 36 GLY 36 555 555 GLY GLY A . n A 1 37 ALA 37 556 556 ALA ALA A . n A 1 38 SER 38 557 557 SER SER A . n A 1 39 VAL 39 558 558 VAL VAL A . n A 1 40 ILE 40 559 559 ILE ILE A . n A 1 41 SER 41 560 560 SER SER A . n A 1 42 THR 42 561 561 THR THR A . n A 1 43 ARG 43 562 562 ARG ARG A . n A 1 44 CYS 44 563 563 CYS CYS A . n A 1 45 SER 45 564 564 SER SER A . n A 1 46 GLU 46 565 565 GLU GLU A . n A 1 47 THR 47 566 566 THR THR A . n A 1 48 TYR 48 567 567 TYR TYR A . n A 1 49 GLU 49 568 568 GLU GLU A . n A 1 50 THR 50 569 569 THR THR A . n A 1 51 LYS 51 570 570 LYS LYS A . n A 1 52 THR 52 571 571 THR THR A . n A 1 53 ALA 53 572 572 ALA ALA A . n A 1 54 LEU 54 573 573 LEU LEU A . n A 1 55 LEU 55 574 574 LEU LEU A . n A 1 56 SER 56 575 575 SER SER A . n A 1 57 LEU 57 576 576 LEU LEU A . n A 1 58 PHE 58 577 577 PHE PHE A . n A 1 59 GLY 59 578 578 GLY GLY A . n A 1 60 ILE 60 579 579 ILE ILE A . n A 1 61 PRO 61 580 580 PRO PRO A . n A 1 62 LEU 62 581 581 LEU LEU A . n A 1 63 TRP 63 582 582 TRP TRP A . n A 1 64 TYR 64 583 583 TYR TYR A . n A 1 65 HIS 65 584 584 HIS HIS A . n A 1 66 SER 66 585 585 SER SER A . n A 1 67 GLN 67 586 586 GLN GLN A . n A 1 68 SER 68 587 587 SER SER A . n A 1 69 PRO 69 588 588 PRO PRO A . n A 1 70 ARG 70 589 589 ARG ARG A . n A 1 71 VAL 71 590 590 VAL VAL A . n A 1 72 ILE 72 591 591 ILE ILE A . n A 1 73 LEU 73 592 592 LEU LEU A . n A 1 74 GLN 74 593 593 GLN GLN A . n A 1 75 PRO 75 594 594 PRO PRO A . n A 1 76 ASP 76 595 595 ASP ASP A . n A 1 77 VAL 77 596 596 VAL VAL A . n A 1 78 HIS 78 597 597 HIS HIS A . n A 1 79 PRO 79 598 598 PRO PRO A . n A 1 80 GLY 80 599 599 GLY GLY A . n A 1 81 ASN 81 600 600 ASN ASN A . n A 1 82 CYS 82 601 601 CYS CYS A . n A 1 83 TRP 83 602 602 TRP TRP A . n A 1 84 ALA 84 603 603 ALA ALA A . n A 1 85 PHE 85 604 604 PHE PHE A . n A 1 86 GLN 86 605 605 GLN GLN A . n A 1 87 GLY 87 606 606 GLY GLY A . n A 1 88 PRO 88 607 607 PRO PRO A . n A 1 89 GLN 89 608 608 GLN GLN A . n A 1 90 GLY 90 609 609 GLY GLY A . n A 1 91 PHE 91 610 610 PHE PHE A . n A 1 92 ALA 92 611 611 ALA ALA A . n A 1 93 VAL 93 612 612 VAL VAL A . n A 1 94 VAL 94 613 613 VAL VAL A . n A 1 95 ARG 95 614 614 ARG ARG A . n A 1 96 LEU 96 615 615 LEU LEU A . n A 1 97 SER 97 616 616 SER SER A . n A 1 98 ALA 98 617 617 ALA ALA A . n A 1 99 ARG 99 618 618 ARG ARG A . n A 1 100 ILE 100 619 619 ILE ILE A . n A 1 101 ARG 101 620 620 ARG ARG A . n A 1 102 PRO 102 621 621 PRO PRO A . n A 1 103 THR 103 622 622 THR THR A . n A 1 104 ALA 104 623 623 ALA ALA A . n A 1 105 VAL 105 624 624 VAL VAL A . n A 1 106 THR 106 625 625 THR THR A . n A 1 107 LEU 107 626 626 LEU LEU A . n A 1 108 GLU 108 627 627 GLU GLU A . n A 1 109 HIS 109 628 628 HIS HIS A . n A 1 110 VAL 110 629 629 VAL VAL A . n A 1 111 PRO 111 630 630 PRO PRO A . n A 1 112 LYS 112 631 631 LYS LYS A . n A 1 113 ALA 113 632 632 ALA ALA A . n A 1 114 LEU 114 633 633 LEU LEU A . n A 1 115 SER 115 634 634 SER SER A . n A 1 116 PRO 116 635 635 PRO PRO A . n A 1 117 ASN 117 636 636 ASN ASN A . n A 1 118 SER 118 637 637 SER SER A . n A 1 119 THR 119 638 638 THR THR A . n A 1 120 ILE 120 639 639 ILE ILE A . n A 1 121 SER 121 640 640 SER SER A . n A 1 122 SER 122 641 641 SER SER A . n A 1 123 ALA 123 642 642 ALA ALA A . n A 1 124 PRO 124 643 643 PRO PRO A . n A 1 125 LYS 125 644 644 LYS LYS A . n A 1 126 ASP 126 645 645 ASP ASP A . n A 1 127 PHE 127 646 646 PHE PHE A . n A 1 128 ALA 128 647 647 ALA ALA A . n A 1 129 ILE 129 648 648 ILE ILE A . n A 1 130 PHE 130 649 649 PHE PHE A . n A 1 131 GLY 131 650 650 GLY GLY A . n A 1 132 PHE 132 651 651 PHE PHE A . n A 1 133 ASP 133 652 652 ASP ASP A . n A 1 134 GLU 134 653 653 GLU GLU A . n A 1 135 ASP 135 654 654 ASP ASP A . n A 1 136 LEU 136 655 655 LEU LEU A . n A 1 137 GLN 137 656 656 GLN GLN A . n A 1 138 GLN 138 657 657 GLN GLN A . n A 1 139 GLU 139 658 658 GLU GLU A . n A 1 140 GLY 140 659 659 GLY GLY A . n A 1 141 THR 141 660 660 THR THR A . n A 1 142 LEU 142 661 661 LEU LEU A . n A 1 143 LEU 143 662 662 LEU LEU A . n A 1 144 GLY 144 663 663 GLY GLY A . n A 1 145 LYS 145 664 664 LYS LYS A . n A 1 146 PHE 146 665 665 PHE PHE A . n A 1 147 THR 147 666 666 THR THR A . n A 1 148 TYR 148 667 667 TYR TYR A . n A 1 149 ASP 149 668 668 ASP ASP A . n A 1 150 GLN 150 669 669 GLN GLN A . n A 1 151 ASP 151 670 670 ASP ASP A . n A 1 152 GLY 152 671 671 GLY GLY A . n A 1 153 GLU 153 672 672 GLU GLU A . n A 1 154 PRO 154 673 673 PRO PRO A . n A 1 155 ILE 155 674 674 ILE ILE A . n A 1 156 GLN 156 675 675 GLN GLN A . n A 1 157 THR 157 676 676 THR THR A . n A 1 158 PHE 158 677 677 PHE PHE A . n A 1 159 HIS 159 678 678 HIS HIS A . n A 1 160 PHE 160 679 679 PHE PHE A . n A 1 161 GLN 161 680 680 GLN GLN A . n A 1 162 ALA 162 681 681 ALA ALA A . n A 1 163 PRO 163 682 682 PRO PRO A . n A 1 164 THR 164 683 683 THR THR A . n A 1 165 MET 165 684 684 MET MET A . n A 1 166 ALA 166 685 685 ALA ALA A . n A 1 167 THR 167 686 686 THR THR A . n A 1 168 TYR 168 687 687 TYR TYR A . n A 1 169 GLN 169 688 688 GLN GLN A . n A 1 170 VAL 170 689 689 VAL VAL A . n A 1 171 VAL 171 690 690 VAL VAL A . n A 1 172 GLU 172 691 691 GLU GLU A . n A 1 173 LEU 173 692 692 LEU LEU A . n A 1 174 ARG 174 693 693 ARG ARG A . n A 1 175 ILE 175 694 694 ILE ILE A . n A 1 176 LEU 176 695 695 LEU LEU A . n A 1 177 THR 177 696 696 THR THR A . n A 1 178 ASN 178 697 697 ASN ASN A . n A 1 179 TRP 179 698 698 TRP TRP A . n A 1 180 GLY 180 699 699 GLY GLY A . n A 1 181 HIS 181 700 700 HIS HIS A . n A 1 182 PRO 182 701 701 PRO PRO A . n A 1 183 GLU 183 702 702 GLU GLU A . n A 1 184 TYR 184 703 703 TYR TYR A . n A 1 185 THR 185 704 704 THR THR A . n A 1 186 CYS 186 705 705 CYS CYS A . n A 1 187 ILE 187 706 706 ILE ILE A . n A 1 188 TYR 188 707 707 TYR TYR A . n A 1 189 ARG 189 708 708 ARG ARG A . n A 1 190 PHE 190 709 709 PHE PHE A . n A 1 191 ARG 191 710 710 ARG ARG A . n A 1 192 VAL 192 711 711 VAL VAL A . n A 1 193 HIS 193 712 712 HIS HIS A . n A 1 194 GLY 194 713 713 GLY GLY A . n A 1 195 GLU 195 714 714 GLU GLU A . n A 1 196 PRO 196 715 715 PRO PRO A . n A 1 197 ALA 197 716 716 ALA ALA A . n A 1 198 HIS 198 717 717 HIS HIS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 1001 1001 K K A . C 3 HOH 1 1101 1101 HOH HOH A . C 3 HOH 2 1102 1102 HOH HOH A . C 3 HOH 3 1103 1103 HOH HOH A . C 3 HOH 4 1104 1104 HOH HOH A . C 3 HOH 5 1105 1105 HOH HOH A . C 3 HOH 6 1106 1106 HOH HOH A . C 3 HOH 7 1107 1107 HOH HOH A . C 3 HOH 8 1108 1108 HOH HOH A . C 3 HOH 9 1109 1109 HOH HOH A . C 3 HOH 10 1110 1110 HOH HOH A . C 3 HOH 11 1111 1111 HOH HOH A . C 3 HOH 12 1112 1112 HOH HOH A . C 3 HOH 13 1113 1113 HOH HOH A . C 3 HOH 14 1114 1114 HOH HOH A . C 3 HOH 15 1115 1115 HOH HOH A . C 3 HOH 16 1116 1116 HOH HOH A . C 3 HOH 17 1117 1117 HOH HOH A . C 3 HOH 18 1118 1118 HOH HOH A . C 3 HOH 19 1119 1119 HOH HOH A . C 3 HOH 20 1120 1120 HOH HOH A . C 3 HOH 21 1121 1121 HOH HOH A . C 3 HOH 22 1122 1122 HOH HOH A . C 3 HOH 23 1123 1123 HOH HOH A . C 3 HOH 24 1124 1124 HOH HOH A . C 3 HOH 25 1125 1125 HOH HOH A . C 3 HOH 26 1126 1126 HOH HOH A . C 3 HOH 27 1127 1127 HOH HOH A . C 3 HOH 28 1128 1128 HOH HOH A . C 3 HOH 29 1129 1129 HOH HOH A . C 3 HOH 30 1130 1130 HOH HOH A . C 3 HOH 31 1131 1131 HOH HOH A . C 3 HOH 32 1132 1132 HOH HOH A . C 3 HOH 33 1133 1133 HOH HOH A . C 3 HOH 34 1134 1134 HOH HOH A . C 3 HOH 35 1135 1135 HOH HOH A . C 3 HOH 36 1136 1136 HOH HOH A . C 3 HOH 37 1137 1137 HOH HOH A . C 3 HOH 38 1138 1138 HOH HOH A . C 3 HOH 39 1139 1139 HOH HOH A . C 3 HOH 40 1140 1140 HOH HOH A . C 3 HOH 41 1141 1141 HOH HOH A . C 3 HOH 42 1142 1142 HOH HOH A . C 3 HOH 43 1143 1143 HOH HOH A . C 3 HOH 44 1144 1144 HOH HOH A . C 3 HOH 45 1145 1145 HOH HOH A . C 3 HOH 46 1146 1146 HOH HOH A . C 3 HOH 47 1147 1147 HOH HOH A . C 3 HOH 48 1148 1148 HOH HOH A . C 3 HOH 49 1149 1149 HOH HOH A . C 3 HOH 50 1150 1150 HOH HOH A . C 3 HOH 51 1151 1151 HOH HOH A . C 3 HOH 52 1152 1152 HOH HOH A . C 3 HOH 53 1153 1153 HOH HOH A . C 3 HOH 54 1154 1154 HOH HOH A . C 3 HOH 55 1155 1155 HOH HOH A . C 3 HOH 56 1156 1156 HOH HOH A . C 3 HOH 57 1157 1157 HOH HOH A . C 3 HOH 58 1158 1158 HOH HOH A . C 3 HOH 59 1159 1159 HOH HOH A . C 3 HOH 60 1160 1160 HOH HOH A . C 3 HOH 61 1161 1161 HOH HOH A . C 3 HOH 62 1162 1162 HOH HOH A . C 3 HOH 63 1163 1163 HOH HOH A . C 3 HOH 64 1164 1164 HOH HOH A . C 3 HOH 65 1165 1165 HOH HOH A . C 3 HOH 66 1166 1166 HOH HOH A . C 3 HOH 67 1167 1167 HOH HOH A . C 3 HOH 68 1168 1168 HOH HOH A . C 3 HOH 69 1169 1169 HOH HOH A . C 3 HOH 70 1170 1170 HOH HOH A . C 3 HOH 71 1171 1171 HOH HOH A . C 3 HOH 72 1172 1172 HOH HOH A . C 3 HOH 73 1173 1173 HOH HOH A . C 3 HOH 74 1174 1174 HOH HOH A . C 3 HOH 75 1175 1175 HOH HOH A . C 3 HOH 76 1176 1176 HOH HOH A . C 3 HOH 77 1177 1177 HOH HOH A . C 3 HOH 78 1178 1178 HOH HOH A . C 3 HOH 79 1179 1179 HOH HOH A . C 3 HOH 80 1180 1180 HOH HOH A . C 3 HOH 81 1181 1181 HOH HOH A . C 3 HOH 82 1182 1182 HOH HOH A . C 3 HOH 83 1183 1183 HOH HOH A . C 3 HOH 84 1184 1184 HOH HOH A . C 3 HOH 85 1185 1185 HOH HOH A . C 3 HOH 86 1186 1186 HOH HOH A . C 3 HOH 87 1187 1187 HOH HOH A . C 3 HOH 88 1188 1188 HOH HOH A . C 3 HOH 89 1189 1189 HOH HOH A . C 3 HOH 90 1190 1190 HOH HOH A . C 3 HOH 91 1191 1191 HOH HOH A . C 3 HOH 92 1192 1192 HOH HOH A . C 3 HOH 93 1193 1193 HOH HOH A . C 3 HOH 94 1194 1194 HOH HOH A . C 3 HOH 95 1195 1196 HOH HOH A . C 3 HOH 96 1196 1197 HOH HOH A . C 3 HOH 97 1197 1198 HOH HOH A . C 3 HOH 98 1198 1199 HOH HOH A . C 3 HOH 99 1199 1200 HOH HOH A . C 3 HOH 100 1200 1201 HOH HOH A . C 3 HOH 101 1201 1202 HOH HOH A . C 3 HOH 102 1202 1203 HOH HOH A . C 3 HOH 103 1203 1204 HOH HOH A . C 3 HOH 104 1204 1205 HOH HOH A . C 3 HOH 105 1205 1206 HOH HOH A . C 3 HOH 106 1206 1207 HOH HOH A . C 3 HOH 107 1207 1208 HOH HOH A . C 3 HOH 108 1208 1209 HOH HOH A . C 3 HOH 109 1209 1210 HOH HOH A . C 3 HOH 110 1210 1211 HOH HOH A . C 3 HOH 111 1211 1212 HOH HOH A . C 3 HOH 112 1212 1213 HOH HOH A . C 3 HOH 113 1213 1214 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7850 ? 1 MORE -49 ? 1 'SSA (A^2)' 27430 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 39.7900000000 0.8660254038 -0.5000000000 0.0000000000 68.9183016332 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -39.7900000000 -0.8660254038 -0.5000000000 0.0000000000 68.9183016332 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 1148 ? C HOH . 2 1 A HOH 1169 ? C HOH . 3 1 A HOH 1194 ? C HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A VAL 71 ? A VAL 590 ? 1_555 K ? B K . ? A K 1001 ? 1_555 O ? A TYR 188 ? A TYR 707 ? 1_555 83.3 ? 2 O ? A VAL 71 ? A VAL 590 ? 1_555 K ? B K . ? A K 1001 ? 1_555 O ? A ASP 76 ? A ASP 595 ? 1_555 149.3 ? 3 O ? A TYR 188 ? A TYR 707 ? 1_555 K ? B K . ? A K 1001 ? 1_555 O ? A ASP 76 ? A ASP 595 ? 1_555 126.4 ? 4 O ? A VAL 71 ? A VAL 590 ? 1_555 K ? B K . ? A K 1001 ? 1_555 O ? A GLN 74 ? A GLN 593 ? 1_555 80.1 ? 5 O ? A TYR 188 ? A TYR 707 ? 1_555 K ? B K . ? A K 1001 ? 1_555 O ? A GLN 74 ? A GLN 593 ? 1_555 102.0 ? 6 O ? A ASP 76 ? A ASP 595 ? 1_555 K ? B K . ? A K 1001 ? 1_555 O ? A GLN 74 ? A GLN 593 ? 1_555 85.5 ? 7 O ? A VAL 71 ? A VAL 590 ? 1_555 K ? B K . ? A K 1001 ? 1_555 O ? A ASN 81 ? A ASN 600 ? 1_555 117.5 ? 8 O ? A TYR 188 ? A TYR 707 ? 1_555 K ? B K . ? A K 1001 ? 1_555 O ? A ASN 81 ? A ASN 600 ? 1_555 85.7 ? 9 O ? A ASP 76 ? A ASP 595 ? 1_555 K ? B K . ? A K 1001 ? 1_555 O ? A ASN 81 ? A ASN 600 ? 1_555 76.6 ? 10 O ? A GLN 74 ? A GLN 593 ? 1_555 K ? B K . ? A K 1001 ? 1_555 O ? A ASN 81 ? A ASN 600 ? 1_555 161.7 ? 11 O ? A VAL 71 ? A VAL 590 ? 1_555 K ? B K . ? A K 1001 ? 1_555 O ? C HOH . ? A HOH 1124 ? 1_555 83.9 ? 12 O ? A TYR 188 ? A TYR 707 ? 1_555 K ? B K . ? A K 1001 ? 1_555 O ? C HOH . ? A HOH 1124 ? 1_555 157.9 ? 13 O ? A ASP 76 ? A ASP 595 ? 1_555 K ? B K . ? A K 1001 ? 1_555 O ? C HOH . ? A HOH 1124 ? 1_555 70.0 ? 14 O ? A GLN 74 ? A GLN 593 ? 1_555 K ? B K . ? A K 1001 ? 1_555 O ? C HOH . ? A HOH 1124 ? 1_555 93.5 ? 15 O ? A ASN 81 ? A ASN 600 ? 1_555 K ? B K . ? A K 1001 ? 1_555 O ? C HOH . ? A HOH 1124 ? 1_555 84.3 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2012-06-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' . ? 1 PHENIX refinement '(phenix.refine: dev_975)' ? 2 HKL-2000 'data scaling' . ? 3 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CE2 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 TRP _pdbx_validate_rmsd_bond.auth_seq_id_1 582 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 TRP _pdbx_validate_rmsd_bond.auth_seq_id_2 582 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.481 _pdbx_validate_rmsd_bond.bond_target_value 1.409 _pdbx_validate_rmsd_bond.bond_deviation 0.072 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 543 ? ? 71.02 -39.69 2 1 ARG A 562 ? ? -116.65 71.63 3 1 SER A 564 ? ? -44.78 152.00 4 1 LYS A 570 ? ? -94.24 31.44 5 1 ALA A 572 ? ? -52.20 -7.29 6 1 SER A 575 ? ? -84.86 -77.89 7 1 LEU A 576 ? ? -56.26 3.32 8 1 PHE A 577 ? ? -142.35 -27.02 9 1 PRO A 580 ? ? -46.87 155.51 10 1 LYS A 644 ? ? -122.26 -89.68 11 1 LEU A 655 ? ? -69.23 68.27 12 1 ALA A 681 ? ? 45.16 72.81 13 1 THR A 683 ? ? -66.45 -176.30 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 water HOH #