HEADER OXIDOREDUCTASE 28-FEB-12 4DXY TITLE CRYSTAL STRUCTURES OF CYP101D2 Y96A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYP101D2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOVOSPHINGOBIUM AROMATICIVORANS; SOURCE 3 ORGANISM_TAXID: 279238; SOURCE 4 STRAIN: DSM12444; SOURCE 5 GENE: SARO_1478; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CYTOCHROME P450 MUTANT, HAEM-DEPENDENT, MONO-OXYGENASES, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHOU,S.G.BELL,W.YANG,A.DALE,L.-L.WONG REVDAT 2 08-NOV-23 4DXY 1 REMARK SEQADV REVDAT 1 15-AUG-12 4DXY 0 JRNL AUTH S.G.BELL,W.YANG,A.DALE,W.ZHOU,L.-L.WONG JRNL TITL IMPROVING THE AFFINITY AND ACTIVITY OF CYP101D2 FOR JRNL TITL 2 HYDROPHOBIC SUBSTRATES JRNL REF APPL.MICROBIOL.BIOTECHNOL. 2012 JRNL REFN ESSN 1432-0614 JRNL PMID 22820521 JRNL DOI 10.1007/S00253-012-4278-7 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 35480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1866 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2561 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3207 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.171 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.068 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3407 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4633 ; 2.040 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 419 ; 6.471 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;32.733 ;23.671 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 560 ;16.459 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;19.120 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 490 ; 0.149 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2622 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2049 ; 1.260 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3316 ; 2.178 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1358 ; 3.677 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1310 ; 5.202 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DXY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000070922. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : FLAT SI(111) CRYSTALS REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR AND REMARK 200 THE K-B MIRROR SYSTEM REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37490 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 48.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : 0.36100 REMARK 200 FOR SHELL : 4.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3NV5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, PH 8.3, 5% V/V PEG 400, REMARK 280 1.9M AMMONIUM SULPHATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.21867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.60933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.60933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 83.21867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 PHE A 4 REMARK 465 ASP A 5 REMARK 465 GLU A 6 REMARK 465 ALA A 7 REMARK 465 VAL A 8 REMARK 465 ALA A 415 REMARK 465 ARG A 416 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 69 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 112 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 VAL A 160 CB - CA - C ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG A 289 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 MET A 371 CG - SD - CE ANGL. DEV. = -10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 30 67.58 -158.00 REMARK 500 GLU A 94 14.94 -169.91 REMARK 500 LYS A 95 -45.58 -156.47 REMARK 500 MET A 98 51.96 39.36 REMARK 500 TYR A 154 -66.03 -134.27 REMARK 500 ASP A 168 73.57 44.90 REMARK 500 LEU A 256 -77.29 -99.15 REMARK 500 GLN A 311 152.74 178.82 REMARK 500 HIS A 331 -63.04 -98.67 REMARK 500 CYS A 363 112.80 -36.12 REMARK 500 ILE A 384 70.97 -152.73 REMARK 500 ASN A 407 81.51 62.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 363 SG REMARK 620 2 HEM A 501 NA 96.9 REMARK 620 3 HEM A 501 NB 88.0 91.9 REMARK 620 4 HEM A 501 NC 86.1 176.8 87.1 REMARK 620 5 HEM A 501 ND 96.0 87.7 176.0 93.0 REMARK 620 6 HOH A 682 O 171.3 84.5 83.3 92.3 92.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NV5 RELATED DB: PDB REMARK 900 MUTANT DBREF 4DXY A 0 416 UNP Q2G8A2 Q2G8A2_NOVAD 1 417 SEQADV 4DXY ALA A 96 UNP Q2G8A2 TYR 97 ENGINEERED MUTATION SEQRES 1 A 417 MET ALA THR ASN PHE ASP GLU ALA VAL ARG ALA LYS VAL SEQRES 2 A 417 GLU ARG PRO ALA ASN VAL PRO GLU ASP ARG VAL TYR GLU SEQRES 3 A 417 ILE ASP MET TYR ALA LEU ASN GLY ILE GLU ASP GLY TYR SEQRES 4 A 417 HIS GLU ALA TRP LYS LYS VAL GLN HIS PRO GLY ILE PRO SEQRES 5 A 417 ASP LEU ILE TRP THR PRO PHE THR GLY GLY HIS TRP ILE SEQRES 6 A 417 ALA THR ASN GLY ASP THR VAL LYS GLU VAL TYR SER ASP SEQRES 7 A 417 PRO THR ARG PHE SER SER GLU VAL ILE PHE LEU PRO LYS SEQRES 8 A 417 GLU ALA GLY GLU LYS ALA GLN MET VAL PRO THR LYS MET SEQRES 9 A 417 ASP PRO PRO GLU HIS THR PRO TYR ARG LYS ALA LEU ASP SEQRES 10 A 417 LYS GLY LEU ASN LEU ALA LYS ILE ARG LYS VAL GLU ASP SEQRES 11 A 417 LYS VAL ARG GLU VAL ALA SER SER LEU ILE ASP SER PHE SEQRES 12 A 417 ALA ALA ARG GLY GLU CYS ASP PHE ALA ALA GLU TYR ALA SEQRES 13 A 417 GLU LEU PHE PRO VAL HIS VAL PHE MET ALA LEU ALA ASP SEQRES 14 A 417 LEU PRO LEU GLU ASP ILE PRO VAL LEU SER GLU TYR ALA SEQRES 15 A 417 ARG GLN MET THR ARG PRO GLU GLY ASN THR PRO GLU GLU SEQRES 16 A 417 MET ALA THR ASP LEU GLU ALA GLY ASN ASN GLY PHE TYR SEQRES 17 A 417 ALA TYR VAL ASP PRO ILE ILE ARG ALA ARG VAL GLY GLY SEQRES 18 A 417 ASP GLY ASP ASP LEU ILE THR LEU MET VAL ASN SER GLU SEQRES 19 A 417 ILE ASN GLY GLU ARG ILE ALA HIS ASP LYS ALA GLN GLY SEQRES 20 A 417 LEU ILE SER LEU LEU LEU LEU GLY GLY LEU ASP THR VAL SEQRES 21 A 417 VAL ASN PHE LEU SER PHE PHE MET ILE HIS LEU ALA ARG SEQRES 22 A 417 HIS PRO GLU LEU VAL ALA GLU LEU ARG SER ASP PRO LEU SEQRES 23 A 417 LYS LEU MET ARG GLY ALA GLU GLU MET PHE ARG ARG PHE SEQRES 24 A 417 PRO VAL VAL SER GLU ALA ARG MET VAL ALA LYS ASP GLN SEQRES 25 A 417 GLU TYR LYS GLY VAL PHE LEU LYS ARG GLY ASP MET ILE SEQRES 26 A 417 LEU LEU PRO THR ALA LEU HIS GLY LEU ASP ASP ALA ALA SEQRES 27 A 417 ASN PRO GLU PRO TRP LYS LEU ASP PHE SER ARG ARG SER SEQRES 28 A 417 ILE SER HIS SER THR PHE GLY GLY GLY PRO HIS ARG CYS SEQRES 29 A 417 ALA GLY MET HIS LEU ALA ARG MET GLU VAL ILE VAL THR SEQRES 30 A 417 LEU GLU GLU TRP LEU LYS ARG ILE PRO GLU PHE SER PHE SEQRES 31 A 417 LYS GLU GLY GLU THR PRO ILE TYR HIS SER GLY ILE VAL SEQRES 32 A 417 ALA ALA VAL GLU ASN VAL PRO LEU VAL TRP PRO ILE ALA SEQRES 33 A 417 ARG HET HEM A 501 43 HET PEG A 502 7 HET PEG A 503 7 HET PEG A 504 7 HET PEG A 505 7 HET PEG A 506 7 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 PEG 5(C4 H10 O3) FORMUL 8 HOH *257(H2 O) HELIX 1 1 PRO A 19 VAL A 23 5 5 HELIX 2 2 GLY A 33 ASP A 36 5 4 HELIX 3 3 GLY A 37 GLN A 46 1 10 HELIX 4 4 ASN A 67 SER A 76 1 10 HELIX 5 5 GLU A 107 ASN A 120 1 14 HELIX 6 6 ASN A 120 LYS A 126 1 7 HELIX 7 7 VAL A 127 ALA A 144 1 18 HELIX 8 8 PHE A 150 TYR A 154 1 5 HELIX 9 9 LEU A 157 ALA A 167 1 11 HELIX 10 10 PRO A 170 GLU A 172 5 3 HELIX 11 11 ASP A 173 ARG A 186 1 14 HELIX 12 12 THR A 191 VAL A 218 1 28 HELIX 13 13 ASP A 224 ASN A 231 1 8 HELIX 14 14 ALA A 240 GLY A 255 1 16 HELIX 15 15 LEU A 256 ARG A 272 1 17 HELIX 16 16 HIS A 273 ASP A 283 1 11 HELIX 17 17 ASP A 283 GLY A 290 1 8 HELIX 18 18 GLY A 290 PHE A 298 1 9 HELIX 19 19 THR A 328 LEU A 333 1 6 HELIX 20 20 GLY A 358 ARG A 362 5 5 HELIX 21 21 GLY A 365 ILE A 384 1 20 SHEET 1 A 5 LEU A 53 THR A 56 0 SHEET 2 A 5 HIS A 62 ALA A 65 -1 O ILE A 64 N ILE A 54 SHEET 3 A 5 MET A 323 PRO A 327 1 O LEU A 325 N ALA A 65 SHEET 4 A 5 SER A 302 VAL A 307 -1 N ARG A 305 O ILE A 324 SHEET 5 A 5 PHE A 81 SER A 82 -1 N SER A 82 O MET A 306 SHEET 1 B 3 GLU A 147 ASP A 149 0 SHEET 2 B 3 PRO A 409 VAL A 411 -1 O LEU A 410 N CYS A 148 SHEET 3 B 3 SER A 388 PHE A 389 -1 N SER A 388 O VAL A 411 SHEET 1 C 2 GLU A 233 ILE A 234 0 SHEET 2 C 2 GLU A 237 ARG A 238 -1 O GLU A 237 N ILE A 234 SHEET 1 D 2 GLN A 311 TYR A 313 0 SHEET 2 D 2 VAL A 316 LEU A 318 -1 O LEU A 318 N GLN A 311 SHEET 1 E 2 ILE A 396 HIS A 398 0 SHEET 2 E 2 ALA A 404 GLU A 406 -1 O GLU A 406 N ILE A 396 LINK SG CYS A 363 FE HEM A 501 1555 1555 2.25 LINK FE HEM A 501 O HOH A 682 1555 1555 2.39 CISPEP 1 LEU A 88 PRO A 89 0 3.68 CISPEP 2 GLY A 93 GLU A 94 0 -11.53 CISPEP 3 VAL A 99 PRO A 100 0 -0.41 CISPEP 4 PRO A 105 PRO A 106 0 6.53 CISPEP 5 GLU A 188 GLY A 189 0 2.01 SITE 1 AC1 21 TYR A 75 HIS A 108 ARG A 112 LEU A 251 SITE 2 AC1 21 GLY A 254 GLY A 255 THR A 258 PHE A 262 SITE 3 AC1 21 GLU A 303 ARG A 305 THR A 355 PHE A 356 SITE 4 AC1 21 GLY A 357 HIS A 361 CYS A 363 GLY A 365 SITE 5 AC1 21 GLU A 372 PEG A 502 HOH A 612 HOH A 679 SITE 6 AC1 21 HOH A 682 SITE 1 AC2 5 LEU A 250 GLU A 303 HEM A 501 HOH A 682 SITE 2 AC2 5 HOH A 728 SITE 1 AC3 6 LEU A 121 GLU A 292 PHE A 356 MET A 366 SITE 2 AC3 6 HIS A 367 ARG A 370 SITE 1 AC4 2 GLU A 84 LYS A 90 SITE 1 AC5 8 ARG A 112 ASN A 120 LEU A 121 ARG A 362 SITE 2 AC5 8 CYS A 363 MET A 366 HIS A 367 HOH A 616 SITE 1 AC6 10 GLU A 179 TYR A 180 GLN A 183 ALA A 201 SITE 2 AC6 10 HIS A 269 HIS A 273 TRP A 342 LYS A 343 SITE 3 AC6 10 LEU A 344 HOH A 717 CRYST1 86.896 86.896 124.828 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011508 0.006644 0.000000 0.00000 SCALE2 0.000000 0.013288 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008011 0.00000