data_4DXZ # _entry.id 4DXZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4DXZ RCSB RCSB070923 WWPDB D_1000070923 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4DY3 . unspecified PDB 4DY5 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4DXZ _pdbx_database_status.recvd_initial_deposition_date 2012-02-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Leysen, S.' 1 ? 'Vanheuverzwijn, S.' 2 ? 'Van Asten, K.' 3 ? 'Vanderkelen, L.' 4 ? 'Michiels, C.W.' 5 ? 'Strelkov, S.V.' 6 ? # _citation.id primary _citation.title 'crystal structure of a PliG-Ec mutant, a periplasmic lysozyme inhibitor of g-type lysozyme from Escherichia coli' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Leysen, S.' 1 primary 'Vandekelen, L.' 2 primary 'Michiels, C.W.' 3 primary 'Strelkov, S.V.' 4 # _cell.entry_id 4DXZ _cell.length_a 80.316 _cell.length_b 80.316 _cell.length_c 31.098 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4DXZ _symmetry.space_group_name_H-M 'I 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Inhibitor of g-type lysozyme' 12668.682 1 ? 'L75M, L112M' ? ? 2 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 215 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;AGKNVNVEFRKGHSSAQYSGEIKGYDYDTYTFYAKKGQKVHVSISNEGADTY(MSE)FGPGIDDSVDLSRYSPELDSHGQ YSLPASGKYELRV(MSE)QTRNDARKNKTKKYNVDIQIK ; _entity_poly.pdbx_seq_one_letter_code_can ;AGKNVNVEFRKGHSSAQYSGEIKGYDYDTYTFYAKKGQKVHVSISNEGADTYMFGPGIDDSVDLSRYSPELDSHGQYSLP ASGKYELRVMQTRNDARKNKTKKYNVDIQIK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLY n 1 3 LYS n 1 4 ASN n 1 5 VAL n 1 6 ASN n 1 7 VAL n 1 8 GLU n 1 9 PHE n 1 10 ARG n 1 11 LYS n 1 12 GLY n 1 13 HIS n 1 14 SER n 1 15 SER n 1 16 ALA n 1 17 GLN n 1 18 TYR n 1 19 SER n 1 20 GLY n 1 21 GLU n 1 22 ILE n 1 23 LYS n 1 24 GLY n 1 25 TYR n 1 26 ASP n 1 27 TYR n 1 28 ASP n 1 29 THR n 1 30 TYR n 1 31 THR n 1 32 PHE n 1 33 TYR n 1 34 ALA n 1 35 LYS n 1 36 LYS n 1 37 GLY n 1 38 GLN n 1 39 LYS n 1 40 VAL n 1 41 HIS n 1 42 VAL n 1 43 SER n 1 44 ILE n 1 45 SER n 1 46 ASN n 1 47 GLU n 1 48 GLY n 1 49 ALA n 1 50 ASP n 1 51 THR n 1 52 TYR n 1 53 MSE n 1 54 PHE n 1 55 GLY n 1 56 PRO n 1 57 GLY n 1 58 ILE n 1 59 ASP n 1 60 ASP n 1 61 SER n 1 62 VAL n 1 63 ASP n 1 64 LEU n 1 65 SER n 1 66 ARG n 1 67 TYR n 1 68 SER n 1 69 PRO n 1 70 GLU n 1 71 LEU n 1 72 ASP n 1 73 SER n 1 74 HIS n 1 75 GLY n 1 76 GLN n 1 77 TYR n 1 78 SER n 1 79 LEU n 1 80 PRO n 1 81 ALA n 1 82 SER n 1 83 GLY n 1 84 LYS n 1 85 TYR n 1 86 GLU n 1 87 LEU n 1 88 ARG n 1 89 VAL n 1 90 MSE n 1 91 GLN n 1 92 THR n 1 93 ARG n 1 94 ASN n 1 95 ASP n 1 96 ALA n 1 97 ARG n 1 98 LYS n 1 99 ASN n 1 100 LYS n 1 101 THR n 1 102 LYS n 1 103 LYS n 1 104 TYR n 1 105 ASN n 1 106 VAL n 1 107 ASP n 1 108 ILE n 1 109 GLN n 1 110 ILE n 1 111 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'pliG, ycgK, b1178, JW1167' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pETHSUL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PLIG_ECOLI _struct_ref.pdbx_db_accession P76002 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AGKNVNVEFRKGHSSAQYSGEIKGYDYDTYTFYAKKGQKVHVSISNEGADTYLFGPGIDDSVDLSRYSPELDSHGQYSLP ASGKYELRVLQTRNDARKNKTKKYNVDIQIK ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4DXZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 111 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P76002 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 133 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 23 _struct_ref_seq.pdbx_auth_seq_align_end 133 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4DXZ MSE A 53 ? UNP P76002 LEU 75 'ENGINEERED MUTATION' 75 1 1 4DXZ MSE A 90 ? UNP P76002 LEU 112 'ENGINEERED MUTATION' 112 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4DXZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_percent_sol 37.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.25 _exptl_crystal_grow.pdbx_details '0.1M sodium propionate/sodium cacodylate/BIS-TRIS propane pH5.25, 25% w/v PEG1500, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2010-06-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Bartels Monochromomator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9797 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9797 # _reflns.entry_id 4DXZ _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F -3.0 _reflns.d_resolution_low 56.81 _reflns.d_resolution_high 1.25 _reflns.number_obs 38149 _reflns.number_all 39476 _reflns.percent_possible_obs 96.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.046 _reflns.pdbx_netI_over_sigmaI 25.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.25 _reflns_shell.d_res_low 1.32 _reflns_shell.percent_possible_all 99.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.432 _reflns_shell.meanI_over_sigI_obs 4.3 _reflns_shell.pdbx_redundancy 7.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 3941 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4DXZ _refine.ls_number_reflns_obs 27609 _refine.ls_number_reflns_all 27609 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.158 _refine.ls_d_res_high 1.250 _refine.ls_percent_reflns_obs 95.63 _refine.ls_R_factor_obs 0.1423 _refine.ls_R_factor_all 0.1423 _refine.ls_R_factor_R_work 0.1407 _refine.ls_R_factor_R_free 0.1706 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.04 _refine.ls_number_reflns_R_free 2593 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -0.0320 _refine.aniso_B[2][2] -0.0320 _refine.aniso_B[3][3] 0.0640 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.459 _refine.solvent_model_param_bsol 59.896 _refine.pdbx_solvent_vdw_probe_radii 0.60 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.41 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.10 _refine.pdbx_overall_phase_error 17.08 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 886 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 215 _refine_hist.number_atoms_total 1110 _refine_hist.d_res_high 1.250 _refine_hist.d_res_low 40.158 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.010 ? ? 1019 ? 'X-RAY DIFFRACTION' f_angle_d 1.213 ? ? 1397 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 13.386 ? ? 420 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.073 ? ? 146 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 184 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.2497 1.2944 4422 0.1966 86.00 0.2626 . . 196 . . . . 'X-RAY DIFFRACTION' . 1.2944 1.3462 4546 0.1918 90.00 0.2281 . . 252 . . . . 'X-RAY DIFFRACTION' . 1.3462 1.4074 4793 0.1574 94.00 0.2213 . . 249 . . . . 'X-RAY DIFFRACTION' . 1.4074 1.4817 4841 0.1509 95.00 0.2256 . . 256 . . . . 'X-RAY DIFFRACTION' . 1.4817 1.5745 5011 0.1321 97.00 0.1725 . . 239 . . . . 'X-RAY DIFFRACTION' . 1.5745 1.6961 5020 0.1255 99.00 0.1767 . . 259 . . . . 'X-RAY DIFFRACTION' . 1.6961 1.8667 5119 0.1316 99.00 0.1552 . . 249 . . . . 'X-RAY DIFFRACTION' . 1.8667 2.1368 4978 0.1307 98.00 0.1579 . . 274 . . . . 'X-RAY DIFFRACTION' . 2.1368 2.6921 5085 0.1428 99.00 0.1832 . . 303 . . . . 'X-RAY DIFFRACTION' . 2.6921 40.1787 5029 0.1379 100.00 0.1512 . . 316 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4DXZ _struct.title 'crystal structure of a PliG-Ec mutant, a periplasmic lysozyme inhibitor of g-type lysozyme from Escherichia coli' _struct.pdbx_descriptor 'Inhibitor of g-type lysozyme' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DXZ _struct_keywords.pdbx_keywords 'HYDROLASE INHIBITOR' _struct_keywords.text 'lysozyme inhibitor, HYDROLASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 92 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LYS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 98 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 114 _struct_conf.end_auth_comp_id LYS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 120 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A TYR 52 C ? ? ? 1_555 A MSE 53 N ? ? A TYR 74 A MSE 75 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? A MSE 53 C ? ? ? 1_555 A PHE 54 N ? ? A MSE 75 A PHE 76 1_555 ? ? ? ? ? ? ? 1.333 ? covale3 covale ? ? A VAL 89 C ? ? ? 1_555 A MSE 90 N ? ? A VAL 111 A MSE 112 1_555 ? ? ? ? ? ? ? 1.326 ? covale4 covale ? ? A MSE 90 C ? ? ? 1_555 A GLN 91 N ? ? A MSE 112 A GLN 113 1_555 ? ? ? ? ? ? ? 1.322 ? metalc1 metalc ? ? D NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 203 A HOH 488 1_555 ? ? ? ? ? ? ? 2.903 ? metalc2 metalc ? ? A TYR 27 OH ? ? ? 1_555 C NA . NA ? ? A TYR 49 A NA 202 1_555 ? ? ? ? ? ? ? 3.103 ? metalc3 metalc ? ? A HIS 41 O ? ? ? 1_555 B NA . NA ? ? A HIS 63 A NA 201 1_555 ? ? ? ? ? ? ? 3.128 ? metalc4 metalc ? ? A ASP 107 O ? ? ? 1_555 B NA . NA ? ? A ASP 129 A NA 201 1_555 ? ? ? ? ? ? ? 3.166 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASN A 4 ? ASN A 6 ? ASN A 26 ASN A 28 A 2 TYR A 27 ? ALA A 34 ? TYR A 49 ALA A 56 A 3 GLY A 83 ? GLN A 91 ? GLY A 105 GLN A 113 A 4 ALA A 49 ? PHE A 54 ? ALA A 71 PHE A 76 A 5 VAL A 62 ? ASP A 63 ? VAL A 84 ASP A 85 B 1 SER A 15 ? LYS A 23 ? SER A 37 LYS A 45 B 2 THR A 101 ? LYS A 111 ? THR A 123 LYS A 133 B 3 LYS A 39 ? ILE A 44 ? LYS A 61 ILE A 66 B 4 TYR A 77 ? SER A 78 ? TYR A 99 SER A 100 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 5 ? N VAL A 27 O THR A 29 ? O THR A 51 A 2 3 N PHE A 32 ? N PHE A 54 O TYR A 85 ? O TYR A 107 A 3 4 O ARG A 88 ? O ARG A 110 N TYR A 52 ? N TYR A 74 A 4 5 N MSE A 53 ? N MSE A 75 O VAL A 62 ? O VAL A 84 B 1 2 N ALA A 16 ? N ALA A 38 O ILE A 108 ? O ILE A 130 B 2 3 O LYS A 111 ? O LYS A 133 N LYS A 39 ? N LYS A 61 B 3 4 N VAL A 40 ? N VAL A 62 O TYR A 77 ? O TYR A 99 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE NA A 201' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE NA A 202' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE NA A 203' AC4 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE GOL A 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 41 ? HIS A 63 . ? 1_555 ? 2 AC1 4 SER A 43 ? SER A 65 . ? 1_555 ? 3 AC1 4 ASP A 107 ? ASP A 129 . ? 1_555 ? 4 AC1 4 GLN A 109 ? GLN A 131 . ? 1_555 ? 5 AC2 2 TYR A 27 ? TYR A 49 . ? 1_555 ? 6 AC2 2 GLU A 86 ? GLU A 108 . ? 1_555 ? 7 AC3 4 TYR A 25 ? TYR A 47 . ? 7_554 ? 8 AC3 4 ARG A 93 ? ARG A 115 . ? 1_555 ? 9 AC3 4 ASN A 94 ? ASN A 116 . ? 1_555 ? 10 AC3 4 HOH F . ? HOH A 488 . ? 1_555 ? 11 AC4 7 PHE A 9 ? PHE A 31 . ? 1_555 ? 12 AC4 7 TYR A 33 ? TYR A 55 . ? 1_555 ? 13 AC4 7 ILE A 110 ? ILE A 132 . ? 1_555 ? 14 AC4 7 HOH F . ? HOH A 302 . ? 1_555 ? 15 AC4 7 HOH F . ? HOH A 317 . ? 1_555 ? 16 AC4 7 HOH F . ? HOH A 370 . ? 1_555 ? 17 AC4 7 HOH F . ? HOH A 416 . ? 1_555 ? # _database_PDB_matrix.entry_id 4DXZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4DXZ _atom_sites.fract_transf_matrix[1][1] 0.012451 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012451 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.032156 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N NA O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 23 23 ALA ALA A . n A 1 2 GLY 2 24 24 GLY GLY A . n A 1 3 LYS 3 25 25 LYS LYS A . n A 1 4 ASN 4 26 26 ASN ASN A . n A 1 5 VAL 5 27 27 VAL VAL A . n A 1 6 ASN 6 28 28 ASN ASN A . n A 1 7 VAL 7 29 29 VAL VAL A . n A 1 8 GLU 8 30 30 GLU GLU A . n A 1 9 PHE 9 31 31 PHE PHE A . n A 1 10 ARG 10 32 32 ARG ARG A . n A 1 11 LYS 11 33 33 LYS LYS A . n A 1 12 GLY 12 34 34 GLY GLY A . n A 1 13 HIS 13 35 35 HIS HIS A . n A 1 14 SER 14 36 36 SER SER A . n A 1 15 SER 15 37 37 SER SER A . n A 1 16 ALA 16 38 38 ALA ALA A . n A 1 17 GLN 17 39 39 GLN GLN A . n A 1 18 TYR 18 40 40 TYR TYR A . n A 1 19 SER 19 41 41 SER SER A . n A 1 20 GLY 20 42 42 GLY GLY A . n A 1 21 GLU 21 43 43 GLU GLU A . n A 1 22 ILE 22 44 44 ILE ILE A . n A 1 23 LYS 23 45 45 LYS LYS A . n A 1 24 GLY 24 46 46 GLY GLY A . n A 1 25 TYR 25 47 47 TYR TYR A . n A 1 26 ASP 26 48 48 ASP ASP A . n A 1 27 TYR 27 49 49 TYR TYR A . n A 1 28 ASP 28 50 50 ASP ASP A . n A 1 29 THR 29 51 51 THR THR A . n A 1 30 TYR 30 52 52 TYR TYR A . n A 1 31 THR 31 53 53 THR THR A . n A 1 32 PHE 32 54 54 PHE PHE A . n A 1 33 TYR 33 55 55 TYR TYR A . n A 1 34 ALA 34 56 56 ALA ALA A . n A 1 35 LYS 35 57 57 LYS LYS A . n A 1 36 LYS 36 58 58 LYS LYS A . n A 1 37 GLY 37 59 59 GLY GLY A . n A 1 38 GLN 38 60 60 GLN GLN A . n A 1 39 LYS 39 61 61 LYS LYS A . n A 1 40 VAL 40 62 62 VAL VAL A . n A 1 41 HIS 41 63 63 HIS HIS A . n A 1 42 VAL 42 64 64 VAL VAL A . n A 1 43 SER 43 65 65 SER SER A . n A 1 44 ILE 44 66 66 ILE ILE A . n A 1 45 SER 45 67 67 SER SER A . n A 1 46 ASN 46 68 68 ASN ASN A . n A 1 47 GLU 47 69 69 GLU GLU A . n A 1 48 GLY 48 70 70 GLY GLY A . n A 1 49 ALA 49 71 71 ALA ALA A . n A 1 50 ASP 50 72 72 ASP ASP A . n A 1 51 THR 51 73 73 THR THR A . n A 1 52 TYR 52 74 74 TYR TYR A . n A 1 53 MSE 53 75 75 MSE MSE A . n A 1 54 PHE 54 76 76 PHE PHE A . n A 1 55 GLY 55 77 77 GLY GLY A . n A 1 56 PRO 56 78 78 PRO PRO A . n A 1 57 GLY 57 79 79 GLY GLY A . n A 1 58 ILE 58 80 80 ILE ILE A . n A 1 59 ASP 59 81 81 ASP ASP A . n A 1 60 ASP 60 82 82 ASP ASP A . n A 1 61 SER 61 83 83 SER SER A . n A 1 62 VAL 62 84 84 VAL VAL A . n A 1 63 ASP 63 85 85 ASP ASP A . n A 1 64 LEU 64 86 86 LEU LEU A . n A 1 65 SER 65 87 87 SER SER A . n A 1 66 ARG 66 88 88 ARG ARG A . n A 1 67 TYR 67 89 89 TYR TYR A . n A 1 68 SER 68 90 90 SER SER A . n A 1 69 PRO 69 91 91 PRO PRO A . n A 1 70 GLU 70 92 92 GLU GLU A . n A 1 71 LEU 71 93 93 LEU LEU A . n A 1 72 ASP 72 94 94 ASP ASP A . n A 1 73 SER 73 95 95 SER SER A . n A 1 74 HIS 74 96 96 HIS HIS A . n A 1 75 GLY 75 97 97 GLY GLY A . n A 1 76 GLN 76 98 98 GLN GLN A . n A 1 77 TYR 77 99 99 TYR TYR A . n A 1 78 SER 78 100 100 SER SER A . n A 1 79 LEU 79 101 101 LEU LEU A . n A 1 80 PRO 80 102 102 PRO PRO A . n A 1 81 ALA 81 103 103 ALA ALA A . n A 1 82 SER 82 104 104 SER SER A . n A 1 83 GLY 83 105 105 GLY GLY A . n A 1 84 LYS 84 106 106 LYS LYS A . n A 1 85 TYR 85 107 107 TYR TYR A . n A 1 86 GLU 86 108 108 GLU GLU A . n A 1 87 LEU 87 109 109 LEU LEU A . n A 1 88 ARG 88 110 110 ARG ARG A . n A 1 89 VAL 89 111 111 VAL VAL A . n A 1 90 MSE 90 112 112 MSE MSE A . n A 1 91 GLN 91 113 113 GLN GLN A . n A 1 92 THR 92 114 114 THR THR A . n A 1 93 ARG 93 115 115 ARG ARG A . n A 1 94 ASN 94 116 116 ASN ASN A . n A 1 95 ASP 95 117 117 ASP ASP A . n A 1 96 ALA 96 118 118 ALA ALA A . n A 1 97 ARG 97 119 119 ARG ARG A . n A 1 98 LYS 98 120 120 LYS LYS A . n A 1 99 ASN 99 121 121 ASN ASN A . n A 1 100 LYS 100 122 122 LYS LYS A . n A 1 101 THR 101 123 123 THR THR A . n A 1 102 LYS 102 124 124 LYS LYS A . n A 1 103 LYS 103 125 125 LYS LYS A . n A 1 104 TYR 104 126 126 TYR TYR A . n A 1 105 ASN 105 127 127 ASN ASN A . n A 1 106 VAL 106 128 128 VAL VAL A . n A 1 107 ASP 107 129 129 ASP ASP A . n A 1 108 ILE 108 130 130 ILE ILE A . n A 1 109 GLN 109 131 131 GLN GLN A . n A 1 110 ILE 110 132 132 ILE ILE A . n A 1 111 LYS 111 133 133 LYS LYS A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 53 A MSE 75 ? MET SELENOMETHIONINE 2 A MSE 90 A MSE 112 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 379 ? F HOH . 2 1 A HOH 434 ? F HOH . 3 1 A HOH 478 ? F HOH . # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id O _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id HIS _pdbx_struct_conn_angle.ptnr1_label_seq_id 41 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id HIS _pdbx_struct_conn_angle.ptnr1_auth_seq_id 63 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id NA _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id B _pdbx_struct_conn_angle.ptnr2_label_comp_id NA _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id NA _pdbx_struct_conn_angle.ptnr2_auth_seq_id 201 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id ASP _pdbx_struct_conn_angle.ptnr3_label_seq_id 107 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id ASP _pdbx_struct_conn_angle.ptnr3_auth_seq_id 129 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 71.1 _pdbx_struct_conn_angle.value_esd ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2012-06-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 Auto-Rickshaw phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6.3_473)' ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 405 ? ? O A HOH 463 ? ? 1.87 2 1 O A HOH 472 ? ? O A HOH 490 ? ? 1.91 3 1 O A HOH 386 ? ? O A HOH 420 ? ? 1.96 4 1 OH A TYR 40 ? ? O A HOH 499 ? ? 2.03 5 1 O A HOH 387 ? ? O A HOH 436 ? ? 2.03 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 384 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 385 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_564 _pdbx_validate_symm_contact.dist 2.09 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 82 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 71.03 _pdbx_validate_torsion.psi -101.86 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 GLYCEROL GOL 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 201 1 NA NA A . C 2 NA 1 202 2 NA NA A . D 2 NA 1 203 3 NA NA A . E 3 GOL 1 204 1 GOL GOL A . F 4 HOH 1 301 1 HOH HOH A . F 4 HOH 2 302 2 HOH HOH A . F 4 HOH 3 303 3 HOH HOH A . F 4 HOH 4 304 4 HOH HOH A . F 4 HOH 5 305 5 HOH HOH A . F 4 HOH 6 306 6 HOH HOH A . F 4 HOH 7 307 7 HOH HOH A . F 4 HOH 8 308 8 HOH HOH A . F 4 HOH 9 309 9 HOH HOH A . F 4 HOH 10 310 10 HOH HOH A . F 4 HOH 11 311 11 HOH HOH A . F 4 HOH 12 312 12 HOH HOH A . F 4 HOH 13 313 13 HOH HOH A . F 4 HOH 14 314 14 HOH HOH A . F 4 HOH 15 315 15 HOH HOH A . F 4 HOH 16 316 16 HOH HOH A . F 4 HOH 17 317 17 HOH HOH A . F 4 HOH 18 318 18 HOH HOH A . F 4 HOH 19 319 19 HOH HOH A . F 4 HOH 20 320 20 HOH HOH A . F 4 HOH 21 321 21 HOH HOH A . F 4 HOH 22 322 22 HOH HOH A . F 4 HOH 23 323 23 HOH HOH A . F 4 HOH 24 324 24 HOH HOH A . F 4 HOH 25 325 25 HOH HOH A . F 4 HOH 26 326 26 HOH HOH A . F 4 HOH 27 327 27 HOH HOH A . F 4 HOH 28 328 28 HOH HOH A . F 4 HOH 29 329 29 HOH HOH A . F 4 HOH 30 330 30 HOH HOH A . F 4 HOH 31 331 31 HOH HOH A . F 4 HOH 32 332 32 HOH HOH A . F 4 HOH 33 333 33 HOH HOH A . F 4 HOH 34 334 34 HOH HOH A . F 4 HOH 35 335 35 HOH HOH A . F 4 HOH 36 336 36 HOH HOH A . F 4 HOH 37 337 37 HOH HOH A . F 4 HOH 38 338 38 HOH HOH A . F 4 HOH 39 339 39 HOH HOH A . F 4 HOH 40 340 40 HOH HOH A . F 4 HOH 41 341 41 HOH HOH A . F 4 HOH 42 342 42 HOH HOH A . F 4 HOH 43 343 43 HOH HOH A . F 4 HOH 44 344 44 HOH HOH A . F 4 HOH 45 345 45 HOH HOH A . F 4 HOH 46 346 46 HOH HOH A . F 4 HOH 47 347 47 HOH HOH A . F 4 HOH 48 348 48 HOH HOH A . F 4 HOH 49 349 49 HOH HOH A . F 4 HOH 50 350 50 HOH HOH A . F 4 HOH 51 351 51 HOH HOH A . F 4 HOH 52 352 52 HOH HOH A . F 4 HOH 53 353 53 HOH HOH A . F 4 HOH 54 354 54 HOH HOH A . F 4 HOH 55 355 55 HOH HOH A . F 4 HOH 56 356 56 HOH HOH A . F 4 HOH 57 357 57 HOH HOH A . F 4 HOH 58 358 58 HOH HOH A . F 4 HOH 59 359 59 HOH HOH A . F 4 HOH 60 360 60 HOH HOH A . F 4 HOH 61 361 61 HOH HOH A . F 4 HOH 62 362 62 HOH HOH A . F 4 HOH 63 363 63 HOH HOH A . F 4 HOH 64 364 64 HOH HOH A . F 4 HOH 65 365 65 HOH HOH A . F 4 HOH 66 366 66 HOH HOH A . F 4 HOH 67 367 67 HOH HOH A . F 4 HOH 68 368 68 HOH HOH A . F 4 HOH 69 369 69 HOH HOH A . F 4 HOH 70 370 70 HOH HOH A . F 4 HOH 71 371 71 HOH HOH A . F 4 HOH 72 372 72 HOH HOH A . F 4 HOH 73 373 73 HOH HOH A . F 4 HOH 74 374 74 HOH HOH A . F 4 HOH 75 375 75 HOH HOH A . F 4 HOH 76 376 76 HOH HOH A . F 4 HOH 77 377 77 HOH HOH A . F 4 HOH 78 378 78 HOH HOH A . F 4 HOH 79 379 79 HOH HOH A . F 4 HOH 80 380 80 HOH HOH A . F 4 HOH 81 381 81 HOH HOH A . F 4 HOH 82 382 82 HOH HOH A . F 4 HOH 83 383 83 HOH HOH A . F 4 HOH 84 384 84 HOH HOH A . F 4 HOH 85 385 85 HOH HOH A . F 4 HOH 86 386 86 HOH HOH A . F 4 HOH 87 387 87 HOH HOH A . F 4 HOH 88 388 88 HOH HOH A . F 4 HOH 89 389 89 HOH HOH A . F 4 HOH 90 390 90 HOH HOH A . F 4 HOH 91 391 91 HOH HOH A . F 4 HOH 92 392 92 HOH HOH A . F 4 HOH 93 393 93 HOH HOH A . F 4 HOH 94 394 94 HOH HOH A . F 4 HOH 95 395 95 HOH HOH A . F 4 HOH 96 396 96 HOH HOH A . F 4 HOH 97 397 97 HOH HOH A . F 4 HOH 98 398 98 HOH HOH A . F 4 HOH 99 399 99 HOH HOH A . F 4 HOH 100 400 100 HOH HOH A . F 4 HOH 101 401 101 HOH HOH A . F 4 HOH 102 402 102 HOH HOH A . F 4 HOH 103 403 103 HOH HOH A . F 4 HOH 104 404 104 HOH HOH A . F 4 HOH 105 405 105 HOH HOH A . F 4 HOH 106 406 106 HOH HOH A . F 4 HOH 107 407 107 HOH HOH A . F 4 HOH 108 408 108 HOH HOH A . F 4 HOH 109 409 109 HOH HOH A . F 4 HOH 110 410 110 HOH HOH A . F 4 HOH 111 411 111 HOH HOH A . F 4 HOH 112 412 113 HOH HOH A . F 4 HOH 113 413 114 HOH HOH A . F 4 HOH 114 414 115 HOH HOH A . F 4 HOH 115 415 116 HOH HOH A . F 4 HOH 116 416 117 HOH HOH A . F 4 HOH 117 417 118 HOH HOH A . F 4 HOH 118 418 119 HOH HOH A . F 4 HOH 119 419 120 HOH HOH A . F 4 HOH 120 420 121 HOH HOH A . F 4 HOH 121 421 122 HOH HOH A . F 4 HOH 122 422 123 HOH HOH A . F 4 HOH 123 423 124 HOH HOH A . F 4 HOH 124 424 125 HOH HOH A . F 4 HOH 125 425 126 HOH HOH A . F 4 HOH 126 426 127 HOH HOH A . F 4 HOH 127 427 128 HOH HOH A . F 4 HOH 128 428 129 HOH HOH A . F 4 HOH 129 429 130 HOH HOH A . F 4 HOH 130 430 131 HOH HOH A . F 4 HOH 131 431 132 HOH HOH A . F 4 HOH 132 432 133 HOH HOH A . F 4 HOH 133 433 134 HOH HOH A . F 4 HOH 134 434 135 HOH HOH A . F 4 HOH 135 435 136 HOH HOH A . F 4 HOH 136 436 137 HOH HOH A . F 4 HOH 137 437 138 HOH HOH A . F 4 HOH 138 438 139 HOH HOH A . F 4 HOH 139 439 140 HOH HOH A . F 4 HOH 140 440 141 HOH HOH A . F 4 HOH 141 441 142 HOH HOH A . F 4 HOH 142 442 143 HOH HOH A . F 4 HOH 143 443 144 HOH HOH A . F 4 HOH 144 444 145 HOH HOH A . F 4 HOH 145 445 146 HOH HOH A . F 4 HOH 146 446 147 HOH HOH A . F 4 HOH 147 447 148 HOH HOH A . F 4 HOH 148 448 149 HOH HOH A . F 4 HOH 149 449 150 HOH HOH A . F 4 HOH 150 450 151 HOH HOH A . F 4 HOH 151 451 152 HOH HOH A . F 4 HOH 152 452 153 HOH HOH A . F 4 HOH 153 453 154 HOH HOH A . F 4 HOH 154 454 155 HOH HOH A . F 4 HOH 155 455 156 HOH HOH A . F 4 HOH 156 456 157 HOH HOH A . F 4 HOH 157 457 158 HOH HOH A . F 4 HOH 158 458 159 HOH HOH A . F 4 HOH 159 459 160 HOH HOH A . F 4 HOH 160 460 161 HOH HOH A . F 4 HOH 161 461 162 HOH HOH A . F 4 HOH 162 462 163 HOH HOH A . F 4 HOH 163 463 164 HOH HOH A . F 4 HOH 164 464 165 HOH HOH A . F 4 HOH 165 465 166 HOH HOH A . F 4 HOH 166 466 167 HOH HOH A . F 4 HOH 167 467 168 HOH HOH A . F 4 HOH 168 468 169 HOH HOH A . F 4 HOH 169 469 170 HOH HOH A . F 4 HOH 170 470 171 HOH HOH A . F 4 HOH 171 471 172 HOH HOH A . F 4 HOH 172 472 173 HOH HOH A . F 4 HOH 173 473 174 HOH HOH A . F 4 HOH 174 474 175 HOH HOH A . F 4 HOH 175 475 176 HOH HOH A . F 4 HOH 176 476 177 HOH HOH A . F 4 HOH 177 477 178 HOH HOH A . F 4 HOH 178 478 179 HOH HOH A . F 4 HOH 179 479 180 HOH HOH A . F 4 HOH 180 480 181 HOH HOH A . F 4 HOH 181 481 182 HOH HOH A . F 4 HOH 182 482 183 HOH HOH A . F 4 HOH 183 483 184 HOH HOH A . F 4 HOH 184 484 185 HOH HOH A . F 4 HOH 185 485 186 HOH HOH A . F 4 HOH 186 486 187 HOH HOH A . F 4 HOH 187 487 189 HOH HOH A . F 4 HOH 188 488 190 HOH HOH A . F 4 HOH 189 489 191 HOH HOH A . F 4 HOH 190 490 192 HOH HOH A . F 4 HOH 191 491 193 HOH HOH A . F 4 HOH 192 492 194 HOH HOH A . F 4 HOH 193 493 195 HOH HOH A . F 4 HOH 194 494 196 HOH HOH A . F 4 HOH 195 495 197 HOH HOH A . F 4 HOH 196 496 198 HOH HOH A . F 4 HOH 197 497 199 HOH HOH A . F 4 HOH 198 498 200 HOH HOH A . F 4 HOH 199 499 201 HOH HOH A . F 4 HOH 200 500 202 HOH HOH A . F 4 HOH 201 501 203 HOH HOH A . F 4 HOH 202 502 204 HOH HOH A . F 4 HOH 203 503 205 HOH HOH A . F 4 HOH 204 504 206 HOH HOH A . F 4 HOH 205 505 207 HOH HOH A . F 4 HOH 206 506 208 HOH HOH A . F 4 HOH 207 507 209 HOH HOH A . F 4 HOH 208 508 210 HOH HOH A . F 4 HOH 209 509 211 HOH HOH A . F 4 HOH 210 510 212 HOH HOH A . F 4 HOH 211 511 213 HOH HOH A . F 4 HOH 212 512 214 HOH HOH A . F 4 HOH 213 513 215 HOH HOH A . F 4 HOH 214 514 216 HOH HOH A . F 4 HOH 215 515 217 HOH HOH A . #