HEADER VIRAL PROTEIN 29-FEB-12 4DYQ TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF TERMINASE SMALL SUBUNIT GP1 OF TITLE 2 THE BACTERIAL VIRUS SF6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENE 1 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA PHAGE SF6; SOURCE 3 ORGANISM_COMMON: SHIGELLA FLEXNERI BACTERIOPHAGE VI; SOURCE 4 ORGANISM_TAXID: 10761; SOURCE 5 STRAIN: BACTERIOPHAGE SF6; SOURCE 6 GENE: GP1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET20B KEYWDS GP1, OCTAMER, DNA-BINDING, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHAO,L.TANG REVDAT 3 13-SEP-23 4DYQ 1 REMARK REVDAT 2 15-NOV-17 4DYQ 1 REMARK REVDAT 1 17-OCT-12 4DYQ 0 JRNL AUTH H.ZHAO,Y.N.KAMAU,T.E.CHRISTENSEN,L.TANG JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF THE PHAGE SF6 TERMINASE JRNL TITL 2 SMALL SUBUNIT REVEAL A DNA-SPOOLING DEVICE FACILITATED BY JRNL TITL 3 STRUCTURAL PLASTICITY. JRNL REF J.MOL.BIOL. V. 423 413 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22858866 JRNL DOI 10.1016/J.JMB.2012.07.016 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.2_432) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 43953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.380 REMARK 3 FREE R VALUE TEST SET COUNT : 1925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.1266 - 3.6131 0.90 3096 142 0.1867 0.2141 REMARK 3 2 3.6131 - 2.8709 0.96 3135 145 0.1662 0.2051 REMARK 3 3 2.8709 - 2.5089 0.97 3125 143 0.1742 0.1948 REMARK 3 4 2.5089 - 2.2800 0.98 3108 142 0.1516 0.1648 REMARK 3 5 2.2800 - 2.1168 0.98 3124 143 0.1605 0.1885 REMARK 3 6 2.1168 - 1.9921 0.98 3095 144 0.1661 0.1807 REMARK 3 7 1.9921 - 1.8924 0.97 3063 138 0.1746 0.1948 REMARK 3 8 1.8924 - 1.8101 0.97 3029 140 0.1759 0.2224 REMARK 3 9 1.8101 - 1.7405 0.95 2999 136 0.1841 0.2160 REMARK 3 10 1.7405 - 1.6805 0.95 2973 137 0.1900 0.1995 REMARK 3 11 1.6805 - 1.6279 0.94 2970 136 0.2003 0.2204 REMARK 3 12 1.6279 - 1.5814 0.92 2876 130 0.2193 0.2323 REMARK 3 13 1.5814 - 1.5398 0.90 2809 132 0.2424 0.2509 REMARK 3 14 1.5398 - 1.5023 0.84 2626 117 0.2465 0.2523 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.60 REMARK 3 SHRINKAGE RADIUS : 0.41 REMARK 3 K_SOL : 0.50 REMARK 3 B_SOL : 72.24 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.93800 REMARK 3 B22 (A**2) : -2.93800 REMARK 3 B33 (A**2) : 5.87600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2029 REMARK 3 ANGLE : 0.891 2735 REMARK 3 CHIRALITY : 0.051 297 REMARK 3 PLANARITY : 0.005 358 REMARK 3 DIHEDRAL : 12.692 780 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 10:63 REMARK 3 ORIGIN FOR THE GROUP (A): 36.3354 35.3551 16.8900 REMARK 3 T TENSOR REMARK 3 T11: 0.2970 T22: 0.2443 REMARK 3 T33: 0.7270 T12: 0.1187 REMARK 3 T13: 0.0349 T23: 0.0573 REMARK 3 L TENSOR REMARK 3 L11: 3.3060 L22: 0.3301 REMARK 3 L33: 2.7079 L12: 0.6600 REMARK 3 L13: -1.2547 L23: -0.4760 REMARK 3 S TENSOR REMARK 3 S11: 0.5648 S12: 0.2511 S13: 1.3813 REMARK 3 S21: -0.0155 S22: 0.1597 S23: 0.1558 REMARK 3 S31: -0.2859 S32: 0.2558 S33: -0.5948 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 64:132 REMARK 3 ORIGIN FOR THE GROUP (A): 49.0249 11.8898 17.7052 REMARK 3 T TENSOR REMARK 3 T11: 0.1616 T22: 0.1644 REMARK 3 T33: 0.1837 T12: -0.0093 REMARK 3 T13: 0.0066 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.7171 L22: 0.9472 REMARK 3 L33: 0.8717 L12: -0.0868 REMARK 3 L13: -0.0435 L23: 0.5072 REMARK 3 S TENSOR REMARK 3 S11: 0.0445 S12: -0.0586 S13: 0.1085 REMARK 3 S21: 0.0259 S22: 0.0098 S23: -0.0618 REMARK 3 S31: -0.0452 S32: -0.0289 S33: -0.0453 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND RESSEQ 10:63 REMARK 3 ORIGIN FOR THE GROUP (A): 64.0462 30.4447 19.3956 REMARK 3 T TENSOR REMARK 3 T11: 0.3036 T22: 0.2430 REMARK 3 T33: 0.3957 T12: -0.0654 REMARK 3 T13: 0.0142 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.8285 L22: 0.6923 REMARK 3 L33: 0.9541 L12: -0.1891 REMARK 3 L13: -0.2416 L23: 0.0951 REMARK 3 S TENSOR REMARK 3 S11: 0.0633 S12: -0.0270 S13: 0.5635 REMARK 3 S21: 0.1674 S22: 0.0158 S23: -0.2943 REMARK 3 S31: -0.0397 S32: -0.0308 S33: -0.0565 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESSEQ 64:139 REMARK 3 ORIGIN FOR THE GROUP (A): 53.4950 5.0335 15.1209 REMARK 3 T TENSOR REMARK 3 T11: 0.1632 T22: 0.1562 REMARK 3 T33: 0.1830 T12: 0.0041 REMARK 3 T13: -0.0071 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.5242 L22: 1.0839 REMARK 3 L33: 0.4824 L12: 0.0964 REMARK 3 L13: -0.0365 L23: 0.3802 REMARK 3 S TENSOR REMARK 3 S11: -0.0148 S12: -0.0086 S13: 0.0473 REMARK 3 S21: -0.0761 S22: 0.0486 S23: -0.0773 REMARK 3 S31: -0.1262 S32: 0.0343 S33: -0.0233 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DYQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000070950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 298.0 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : SIDE SCATTERING I-BEAM BENT REMARK 200 SINGLE CRYSTAL; ASYMMETRIC CUT REMARK 200 4.9650 DEG. REMARK 200 OPTICS : RH COATED FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45628 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 50.1830 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : 0.50300 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3HEF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M NAH2PO4/0.8M K2HPO4, 0.2M LI2SO4, REMARK 280 PH 6.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.35250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.35250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.35250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.35250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.35250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.35250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.35250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.35250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -144.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 88.70500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 44.35250 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -44.35250 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 44.35250 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 44.35250 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 GLU A 4 REMARK 465 PRO A 5 REMARK 465 LYS A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 ARG A 9 REMARK 465 PRO A 133 REMARK 465 MET A 134 REMARK 465 SER A 135 REMARK 465 THR A 136 REMARK 465 LEU A 137 REMARK 465 PHE A 138 REMARK 465 GLY A 139 REMARK 465 LYS A 140 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 GLU B 4 REMARK 465 PRO B 5 REMARK 465 LYS B 6 REMARK 465 ALA B 7 REMARK 465 GLY B 8 REMARK 465 ARG B 9 REMARK 465 LYS B 140 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 298 O HOH A 299 1.87 REMARK 500 O HOH B 327 O HOH B 334 1.88 REMARK 500 O HOH B 296 O HOH B 317 1.94 REMARK 500 O HOH B 251 O HOH B 294 2.10 REMARK 500 O HOH B 265 O HOH B 270 2.12 REMARK 500 NH1 ARG A 67 O HOH A 295 2.16 REMARK 500 O HOH B 341 O HOH B 346 2.16 REMARK 500 O HOH B 263 O HOH B 317 2.17 REMARK 500 O HOH B 239 O HOH B 281 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 275 O HOH B 302 3545 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 16 -42.74 161.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HEF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BACTERIOPHAGE SF6 TERMINASE SMALL SUBUNIT REMARK 900 RELATED ID: 4DYC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TERMINASE SMALL SUBUNIT GP1 WITH D19R REMARK 900 MUTATION OF THE BACTERIAL VIRUS SF6 REMARK 900 RELATED ID: 4DZP RELATED DB: PDB REMARK 900 RELATED ID: 4DYR RELATED DB: PDB REMARK 900 RELATED ID: 4DZJ RELATED DB: PDB DBREF 4DYQ A 1 140 UNP Q716H4 Q716H4_BPSFV 1 140 DBREF 4DYQ B 1 140 UNP Q716H4 Q716H4_BPSFV 1 140 SEQRES 1 A 140 MET ALA THR GLU PRO LYS ALA GLY ARG PRO SER ASP TYR SEQRES 2 A 140 MET PRO GLU VAL ALA ASP ASP ILE CYS SER LEU LEU SER SEQRES 3 A 140 SER GLY GLU SER LEU LEU LYS VAL CYS LYS ARG PRO GLY SEQRES 4 A 140 MET PRO ASP LYS SER THR VAL PHE ARG TRP LEU ALA LYS SEQRES 5 A 140 HIS GLU ASP PHE ARG ASP LYS TYR ALA LYS ALA THR GLU SEQRES 6 A 140 ALA ARG ALA ASP SER ILE PHE GLU GLU ILE PHE GLU ILE SEQRES 7 A 140 ALA ASP ASN ALA ILE PRO ASP ALA ALA GLU VAL ALA LYS SEQRES 8 A 140 ALA ARG LEU ARG VAL ASP THR ARG LYS TRP ALA LEU ALA SEQRES 9 A 140 ARG MET ASN PRO ARG LYS TYR GLY ASP LYS VAL THR ASN SEQRES 10 A 140 GLU LEU VAL GLY LYS ASP GLY GLY ALA ILE GLN ILE GLU SEQRES 11 A 140 THR SER PRO MET SER THR LEU PHE GLY LYS SEQRES 1 B 140 MET ALA THR GLU PRO LYS ALA GLY ARG PRO SER ASP TYR SEQRES 2 B 140 MET PRO GLU VAL ALA ASP ASP ILE CYS SER LEU LEU SER SEQRES 3 B 140 SER GLY GLU SER LEU LEU LYS VAL CYS LYS ARG PRO GLY SEQRES 4 B 140 MET PRO ASP LYS SER THR VAL PHE ARG TRP LEU ALA LYS SEQRES 5 B 140 HIS GLU ASP PHE ARG ASP LYS TYR ALA LYS ALA THR GLU SEQRES 6 B 140 ALA ARG ALA ASP SER ILE PHE GLU GLU ILE PHE GLU ILE SEQRES 7 B 140 ALA ASP ASN ALA ILE PRO ASP ALA ALA GLU VAL ALA LYS SEQRES 8 B 140 ALA ARG LEU ARG VAL ASP THR ARG LYS TRP ALA LEU ALA SEQRES 9 B 140 ARG MET ASN PRO ARG LYS TYR GLY ASP LYS VAL THR ASN SEQRES 10 B 140 GLU LEU VAL GLY LYS ASP GLY GLY ALA ILE GLN ILE GLU SEQRES 11 B 140 THR SER PRO MET SER THR LEU PHE GLY LYS FORMUL 3 HOH *264(H2 O) HELIX 1 1 GLU A 16 SER A 27 1 12 HELIX 2 2 SER A 30 LYS A 36 1 7 HELIX 3 3 ASP A 42 HIS A 53 1 12 HELIX 4 4 HIS A 53 ASN A 81 1 29 HELIX 5 5 ASP A 85 ASN A 107 1 23 HELIX 6 6 ASN A 107 GLY A 112 1 6 HELIX 7 7 GLY A 121 GLY A 125 5 5 HELIX 8 8 MET B 14 SER B 27 1 14 HELIX 9 9 SER B 30 CYS B 35 1 6 HELIX 10 10 ASP B 42 HIS B 53 1 12 HELIX 11 11 HIS B 53 ASN B 81 1 29 HELIX 12 12 ASP B 85 ASN B 107 1 23 HELIX 13 13 ASN B 107 GLY B 112 1 6 HELIX 14 14 GLY B 121 GLY B 125 5 5 SHEET 1 A 2 VAL A 115 VAL A 120 0 SHEET 2 A 2 ASP B 113 GLU B 118 1 O VAL B 115 N GLU A 118 SHEET 1 B 2 ILE A 129 THR A 131 0 SHEET 2 B 2 ILE B 127 ILE B 129 1 O ILE B 127 N GLU A 130 CRYST1 88.705 88.705 72.394 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011273 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013813 0.00000