HEADER OXIDOREDUCTASE 29-FEB-12 4DYV TITLE CRYSTAL STRUCTURE OF A SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR FROM TITLE 2 XANTHOBACTER AUTOTROPHICUS PY2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOBACTER AUTOTROPHICUS; SOURCE 3 ORGANISM_TAXID: 78245; SOURCE 4 STRAIN: ATCC BAA-1158 / PY2; SOURCE 5 GENE: XAUT_2039; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.AGARWAL,S.CHAMALA,B.EVANS,R.FOTI,B.HILLERICH,A.KAR,J.LAFLEUR, AUTHOR 2 R.SIEDEL,G.VILLIGAS,W.ZENCHECK,A.GIZZI,S.C.ALMO,S.SWAMINATHAN,NEW AUTHOR 3 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 2 15-NOV-17 4DYV 1 REMARK REVDAT 1 14-MAR-12 4DYV 0 JRNL AUTH R.AGARWAL,S.C.ALMO,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF A SHORT-CHAIN DEHYDROGENASE/REDUCTASE JRNL TITL 2 SDR FROM XANTHOBACTER AUTOTROPHICUS PY2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 24806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1325 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1766 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1537 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.753 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1561 ; 0.031 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2127 ; 2.331 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 211 ; 6.531 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 57 ;32.409 ;24.211 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 235 ;11.535 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.489 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 258 ; 0.192 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1170 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1053 ; 1.547 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1684 ; 2.472 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 508 ; 3.850 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 443 ; 5.713 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DYV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000070955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : SI-III REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26195 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: PHENIX_AUTOSOL REMARK 200 SOFTWARE USED: AUTOSOL, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA-ACETATE TRIHYDRATE, PH 4.6, 8% REMARK 280 PEG4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.95050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.52300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.75150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.95050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.52300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.75150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.95050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.52300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.75150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.95050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.52300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 46.75150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 71.90100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 71.90100 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 93.50300 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 93.50300 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 71.90100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 93.50300 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 71.90100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 VAL A 11 REMARK 465 ASP A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 465 GLU A 16 REMARK 465 ASN A 17 REMARK 465 LEU A 18 REMARK 465 TYR A 19 REMARK 465 PHE A 20 REMARK 465 GLN A 21 REMARK 465 SER A 22 REMARK 465 MSE A 23 REMARK 465 SER A 24 REMARK 465 LYS A 25 REMARK 465 THR A 26 REMARK 465 GLY A 27 REMARK 465 ASP A 211 REMARK 465 THR A 212 REMARK 465 PRO A 213 REMARK 465 MSE A 214 REMARK 465 ALA A 215 REMARK 465 GLN A 216 REMARK 465 LYS A 217 REMARK 465 MSE A 218 REMARK 465 LYS A 219 REMARK 465 ALA A 220 REMARK 465 GLY A 221 REMARK 465 VAL A 222 REMARK 465 PRO A 223 REMARK 465 GLN A 224 REMARK 465 ALA A 225 REMARK 465 ASP A 226 REMARK 465 LEU A 227 REMARK 465 SER A 228 REMARK 465 ILE A 229 REMARK 465 LYS A 230 REMARK 465 VAL A 231 REMARK 465 GLU A 232 REMARK 465 PRO A 233 REMARK 465 VAL A 234 REMARK 465 LYS A 265 REMARK 465 MSE A 266 REMARK 465 PRO A 267 REMARK 465 LEU A 268 REMARK 465 ILE A 269 REMARK 465 GLY A 270 REMARK 465 ARG A 271 REMARK 465 GLY A 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 ARG A 60 CD NE CZ NH1 NH2 REMARK 470 ASN A 209 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 74 -116.36 -140.49 REMARK 500 LEU A 135 -53.40 -121.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-015235 RELATED DB: TARGETTRACK DBREF 4DYV A 23 272 UNP A7IGZ0 A7IGZ0_XANP2 1 250 SEQADV 4DYV MSE A 1 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV HIS A 2 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV HIS A 3 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV HIS A 4 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV HIS A 5 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV HIS A 6 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV HIS A 7 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV SER A 8 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV SER A 9 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV GLY A 10 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV VAL A 11 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV ASP A 12 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV LEU A 13 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV GLY A 14 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV THR A 15 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV GLU A 16 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV ASN A 17 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV LEU A 18 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV TYR A 19 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV PHE A 20 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV GLN A 21 UNP A7IGZ0 EXPRESSION TAG SEQADV 4DYV SER A 22 UNP A7IGZ0 EXPRESSION TAG SEQRES 1 A 272 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 272 GLY THR GLU ASN LEU TYR PHE GLN SER MSE SER LYS THR SEQRES 3 A 272 GLY LYS LYS ILE ALA ILE VAL THR GLY ALA GLY SER GLY SEQRES 4 A 272 VAL GLY ARG ALA VAL ALA VAL ALA LEU ALA GLY ALA GLY SEQRES 5 A 272 TYR GLY VAL ALA LEU ALA GLY ARG ARG LEU ASP ALA LEU SEQRES 6 A 272 GLN GLU THR ALA ALA GLU ILE GLY ASP ASP ALA LEU CYS SEQRES 7 A 272 VAL PRO THR ASP VAL THR ASP PRO ASP SER VAL ARG ALA SEQRES 8 A 272 LEU PHE THR ALA THR VAL GLU LYS PHE GLY ARG VAL ASP SEQRES 9 A 272 VAL LEU PHE ASN ASN ALA GLY THR GLY ALA PRO ALA ILE SEQRES 10 A 272 PRO MSE GLU ASP LEU THR PHE ALA GLN TRP LYS GLN VAL SEQRES 11 A 272 VAL ASP THR ASN LEU THR GLY PRO PHE LEU CYS THR GLN SEQRES 12 A 272 GLU ALA PHE ARG VAL MSE LYS ALA GLN GLU PRO ARG GLY SEQRES 13 A 272 GLY ARG ILE ILE ASN ASN GLY SER ILE SER ALA THR SER SEQRES 14 A 272 PRO ARG PRO TYR SER ALA PRO TYR THR ALA THR LYS HIS SEQRES 15 A 272 ALA ILE THR GLY LEU THR LYS SER THR SER LEU ASP GLY SEQRES 16 A 272 ARG VAL HIS ASP ILE ALA CYS GLY GLN ILE ASP ILE GLY SEQRES 17 A 272 ASN ALA ASP THR PRO MSE ALA GLN LYS MSE LYS ALA GLY SEQRES 18 A 272 VAL PRO GLN ALA ASP LEU SER ILE LYS VAL GLU PRO VAL SEQRES 19 A 272 MSE ASP VAL ALA HIS VAL ALA SER ALA VAL VAL TYR MSE SEQRES 20 A 272 ALA SER LEU PRO LEU ASP ALA ASN VAL GLN PHE MSE THR SEQRES 21 A 272 ILE MSE ALA THR LYS MSE PRO LEU ILE GLY ARG GLY MODRES 4DYV MSE A 119 MET SELENOMETHIONINE MODRES 4DYV MSE A 149 MET SELENOMETHIONINE MODRES 4DYV MSE A 235 MET SELENOMETHIONINE MODRES 4DYV MSE A 247 MET SELENOMETHIONINE MODRES 4DYV MSE A 259 MET SELENOMETHIONINE MODRES 4DYV MSE A 262 MET SELENOMETHIONINE HET MSE A 119 8 HET MSE A 149 8 HET MSE A 235 8 HET MSE A 247 8 HET MSE A 259 8 HET MSE A 262 8 HET CL A 301 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 HOH *213(H2 O) HELIX 1 1 SER A 38 ALA A 51 1 14 HELIX 2 2 ARG A 61 GLY A 73 1 13 HELIX 3 3 ASP A 85 GLY A 101 1 17 HELIX 4 4 PRO A 118 LEU A 122 5 5 HELIX 5 5 THR A 123 LEU A 135 1 13 HELIX 6 6 LEU A 135 GLN A 152 1 18 HELIX 7 7 SER A 174 ARG A 196 1 23 HELIX 8 8 ASP A 236 LEU A 250 1 15 SHEET 1 A 7 LEU A 77 PRO A 80 0 SHEET 2 A 7 GLY A 54 GLY A 59 1 N LEU A 57 O LEU A 77 SHEET 3 A 7 ILE A 30 VAL A 33 1 N ALA A 31 O GLY A 54 SHEET 4 A 7 VAL A 105 ASN A 108 1 O PHE A 107 N ILE A 32 SHEET 5 A 7 GLY A 157 ASN A 162 1 O ILE A 160 N LEU A 106 SHEET 6 A 7 ILE A 200 ASN A 209 1 O GLY A 203 N ASN A 161 SHEET 7 A 7 PHE A 258 ALA A 263 1 O MSE A 259 N ASP A 206 LINK C PRO A 118 N MSE A 119 1555 1555 1.34 LINK C MSE A 119 N GLU A 120 1555 1555 1.34 LINK C VAL A 148 N MSE A 149 1555 1555 1.35 LINK C MSE A 149 N LYS A 150 1555 1555 1.31 LINK C MSE A 235 N ASP A 236 1555 1555 1.35 LINK C TYR A 246 N MSE A 247 1555 1555 1.33 LINK C MSE A 247 N ALA A 248 1555 1555 1.32 LINK C PHE A 258 N MSE A 259 1555 1555 1.34 LINK C MSE A 259 N THR A 260 1555 1555 1.36 LINK C ILE A 261 N MSE A 262 1555 1555 1.33 LINK C MSE A 262 N ALA A 263 1555 1555 1.35 CISPEP 1 GLU A 153 PRO A 154 0 -3.83 SITE 1 AC1 3 SER A 164 HIS A 182 HOH A 503 CRYST1 71.901 83.046 93.503 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013908 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010695 0.00000