HEADER ISOMERASE 29-FEB-12 4DZ2 TITLE CRYSTAL STRUCTURE OF A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE WITH TITLE 2 SURFACE MUTATION R92G FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED WITH TITLE 3 FK506 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.2.1.8; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 320372; SOURCE 4 STRAIN: 1710B_A0907; SOURCE 5 GENE: BURPS1710B_A0907; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-HISSMT KEYWDS SSGCID, ISOMERASE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 2 CENTER FOR INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 13-SEP-23 4DZ2 1 REMARK SEQADV LINK REVDAT 3 19-MAR-14 4DZ2 1 REMARK REVDAT 2 12-MAR-14 4DZ2 1 JRNL REVDAT 1 28-MAR-12 4DZ2 0 JRNL AUTH D.W.BEGLEY,D.FOX,D.JENNER,C.JULI,P.G.PIERCE,J.ABENDROTH, JRNL AUTH 2 M.MURUTHI,K.SAFFORD,V.ANDERSON,K.ATKINS,S.R.BARNES,S.O.MOEN, JRNL AUTH 3 A.C.RAYMOND,R.STACY,P.J.MYLER,B.L.STAKER,N.J.HARMER, JRNL AUTH 4 I.H.NORVILLE,U.HOLZGRABE,M.SARKAR-TYSON,T.E.EDWARDS, JRNL AUTH 5 D.D.LORIMER JRNL TITL A STRUCTURAL BIOLOGY APPROACH ENABLES THE DEVELOPMENT OF JRNL TITL 2 ANTIMICROBIALS TARGETING BACTERIAL IMMUNOPHILINS. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 58 1458 2014 JRNL REFN ISSN 0066-4804 JRNL PMID 24366729 JRNL DOI 10.1128/AAC.01875-13 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 18755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 950 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1277 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 237 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.94000 REMARK 3 B22 (A**2) : 1.09000 REMARK 3 B33 (A**2) : -0.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.095 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1811 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1196 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2470 ; 1.473 ; 2.038 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2931 ; 0.890 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 6.664 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 68 ;23.937 ;24.412 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 255 ;11.770 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;21.543 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 283 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2016 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 353 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4285 -1.1860 15.6699 REMARK 3 T TENSOR REMARK 3 T11: 0.0453 T22: 0.0910 REMARK 3 T33: 0.0536 T12: -0.0049 REMARK 3 T13: 0.0098 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.2325 L22: 0.3750 REMARK 3 L33: 1.5589 L12: 0.2506 REMARK 3 L13: 0.6975 L23: 0.2611 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: 0.1950 S13: -0.1359 REMARK 3 S21: 0.0615 S22: 0.1435 S23: 0.0256 REMARK 3 S31: -0.0181 S32: 0.1604 S33: -0.1480 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): 44.6546 20.0033 15.5490 REMARK 3 T TENSOR REMARK 3 T11: 0.0325 T22: 0.0769 REMARK 3 T33: 0.0618 T12: -0.0095 REMARK 3 T13: 0.0024 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 1.0105 L22: 0.4927 REMARK 3 L33: 1.5238 L12: 0.0747 REMARK 3 L13: -0.3481 L23: 0.0389 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: 0.1522 S13: 0.1469 REMARK 3 S21: 0.0396 S22: 0.1390 S23: 0.0061 REMARK 3 S31: -0.0058 S32: -0.0926 S33: -0.1549 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES: WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4DZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000070962. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19250 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 44.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 6.440 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.13100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3VAW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INTERNAL TRACKING NUMBER 224744. JCSG REMARK 280 WELL D10. 0.1M CACODYLATE PH 6.5, 200MM CALCIUM ACETATE, 30.0% W/ REMARK 280 V PEG400, 20% ETHYLENE GLYCOL CRYO. BUPSA.00130.A.D239 PD00214 REMARK 280 21.8MG/ML, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K, REMARK 280 VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.22000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.52500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.22000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.52500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 70.09650 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 55.85731 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 70.09650 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 55.85731 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 70.09650 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 55.85731 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 41 CG CD OE1 NE2 REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 LYS B 47 CG CD CE NZ REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 112 OD2 REMARK 620 2 ASP A 112 OD1 49.7 REMARK 620 3 VAL A 113 OXT 84.4 75.7 REMARK 620 4 HOH A 369 O 77.5 126.4 92.8 REMARK 620 5 HOH A 370 O 154.2 155.2 106.0 78.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 112 OD2 REMARK 620 2 ASP B 112 OD1 49.3 REMARK 620 3 VAL B 113 O 85.4 77.9 REMARK 620 4 HOH B 364 O 77.6 125.9 90.2 REMARK 620 5 HOH B 365 O 153.3 156.4 104.5 77.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FK5 A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FK5 B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VAW RELATED DB: PDB REMARK 900 RELATED ID: 3UQB RELATED DB: PDB REMARK 900 RELATED ID: 3UQA RELATED DB: PDB REMARK 900 RELATED ID: 3UF8 RELATED DB: PDB REMARK 900 RELATED ID: 2L2S RELATED DB: PDB REMARK 900 RELATED ID: 2KO7 RELATED DB: PDB REMARK 900 RELATED ID: 2KE0 RELATED DB: PDB REMARK 900 RELATED ID: 4DZ3 RELATED DB: PDB REMARK 900 SURFACE MUTATION M61H REMARK 900 RELATED ID: 16406 RELATED DB: BMRB REMARK 900 RELATED ID: 17151 RELATED DB: BMRB REMARK 900 RELATED ID: 16491 RELATED DB: BMRB REMARK 900 RELATED ID: SSGCID-BUPSA.00130.A RELATED DB: TARGETTRACK DBREF 4DZ2 A 2 113 UNP Q3JK38 Q3JK38_BURP1 2 113 DBREF 4DZ2 B 2 113 UNP Q3JK38 Q3JK38_BURP1 2 113 SEQADV 4DZ2 SER A 1 UNP Q3JK38 EXPRESSION TAG SEQADV 4DZ2 GLY A 92 UNP Q3JK38 ARG 92 ENGINEERED MUTATION SEQADV 4DZ2 SER B 1 UNP Q3JK38 EXPRESSION TAG SEQADV 4DZ2 GLY B 92 UNP Q3JK38 ARG 92 ENGINEERED MUTATION SEQRES 1 A 113 SER THR VAL VAL THR THR GLU SER GLY LEU LYS TYR GLU SEQRES 2 A 113 ASP LEU THR GLU GLY SER GLY ALA GLU ALA ARG ALA GLY SEQRES 3 A 113 GLN THR VAL SER VAL HIS TYR THR GLY TRP LEU THR ASP SEQRES 4 A 113 GLY GLN LYS PHE ASP SER SER LYS ASP ARG ASN ASP PRO SEQRES 5 A 113 PHE ALA PHE VAL LEU GLY GLY GLY MET VAL ILE LYS GLY SEQRES 6 A 113 TRP ASP GLU GLY VAL GLN GLY MET LYS VAL GLY GLY VAL SEQRES 7 A 113 ARG ARG LEU THR ILE PRO PRO GLN LEU GLY TYR GLY ALA SEQRES 8 A 113 GLY GLY ALA GLY GLY VAL ILE PRO PRO ASN ALA THR LEU SEQRES 9 A 113 VAL PHE GLU VAL GLU LEU LEU ASP VAL SEQRES 1 B 113 SER THR VAL VAL THR THR GLU SER GLY LEU LYS TYR GLU SEQRES 2 B 113 ASP LEU THR GLU GLY SER GLY ALA GLU ALA ARG ALA GLY SEQRES 3 B 113 GLN THR VAL SER VAL HIS TYR THR GLY TRP LEU THR ASP SEQRES 4 B 113 GLY GLN LYS PHE ASP SER SER LYS ASP ARG ASN ASP PRO SEQRES 5 B 113 PHE ALA PHE VAL LEU GLY GLY GLY MET VAL ILE LYS GLY SEQRES 6 B 113 TRP ASP GLU GLY VAL GLN GLY MET LYS VAL GLY GLY VAL SEQRES 7 B 113 ARG ARG LEU THR ILE PRO PRO GLN LEU GLY TYR GLY ALA SEQRES 8 B 113 GLY GLY ALA GLY GLY VAL ILE PRO PRO ASN ALA THR LEU SEQRES 9 B 113 VAL PHE GLU VAL GLU LEU LEU ASP VAL HET FK5 A 200 57 HET CA A 201 1 HET FK5 B 200 57 HET CA B 201 1 HETNAM FK5 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN HETNAM CA CALCIUM ION HETSYN FK5 K506 FORMUL 3 FK5 2(C44 H69 N O12) FORMUL 4 CA 2(CA 2+) FORMUL 7 HOH *237(H2 O) HELIX 1 1 ILE A 63 VAL A 70 1 8 HELIX 2 2 PRO A 84 GLY A 88 5 5 HELIX 3 3 ILE B 63 VAL B 70 1 8 HELIX 4 4 PRO B 84 GLY B 88 5 5 SHEET 1 A 6 VAL A 4 THR A 5 0 SHEET 2 A 6 LYS A 11 THR A 16 -1 O TYR A 12 N VAL A 4 SHEET 3 A 6 VAL A 78 ILE A 83 -1 O THR A 82 N LYS A 11 SHEET 4 A 6 LEU A 104 ASP A 112 -1 O VAL A 108 N ARG A 79 SHEET 5 A 6 THR A 28 LEU A 37 -1 N HIS A 32 O GLU A 109 SHEET 6 A 6 LYS A 42 SER A 45 -1 O ASP A 44 N GLY A 35 SHEET 1 B 6 VAL A 4 THR A 5 0 SHEET 2 B 6 LYS A 11 THR A 16 -1 O TYR A 12 N VAL A 4 SHEET 3 B 6 VAL A 78 ILE A 83 -1 O THR A 82 N LYS A 11 SHEET 4 B 6 LEU A 104 ASP A 112 -1 O VAL A 108 N ARG A 79 SHEET 5 B 6 THR A 28 LEU A 37 -1 N HIS A 32 O GLU A 109 SHEET 6 B 6 PHE A 53 VAL A 56 -1 O PHE A 53 N VAL A 31 SHEET 1 C 6 VAL B 4 THR B 5 0 SHEET 2 C 6 LYS B 11 THR B 16 -1 O TYR B 12 N VAL B 4 SHEET 3 C 6 VAL B 78 ILE B 83 -1 O THR B 82 N LYS B 11 SHEET 4 C 6 LEU B 104 ASP B 112 -1 O VAL B 108 N ARG B 79 SHEET 5 C 6 THR B 28 LEU B 37 -1 N HIS B 32 O GLU B 109 SHEET 6 C 6 LYS B 42 SER B 45 -1 O ASP B 44 N GLY B 35 SHEET 1 D 6 VAL B 4 THR B 5 0 SHEET 2 D 6 LYS B 11 THR B 16 -1 O TYR B 12 N VAL B 4 SHEET 3 D 6 VAL B 78 ILE B 83 -1 O THR B 82 N LYS B 11 SHEET 4 D 6 LEU B 104 ASP B 112 -1 O VAL B 108 N ARG B 79 SHEET 5 D 6 THR B 28 LEU B 37 -1 N HIS B 32 O GLU B 109 SHEET 6 D 6 PHE B 53 VAL B 56 -1 O PHE B 53 N VAL B 31 LINK OD2 ASP A 112 CA CA A 201 1555 1555 2.56 LINK OD1 ASP A 112 CA CA A 201 1555 1555 2.57 LINK OXT VAL A 113 CA CA A 201 1555 1555 2.37 LINK CA CA A 201 O HOH A 369 1555 1555 2.31 LINK CA CA A 201 O HOH A 370 1555 1555 2.29 LINK OD2 ASP B 112 CA CA B 201 1555 1555 2.58 LINK OD1 ASP B 112 CA CA B 201 1555 1555 2.58 LINK O VAL B 113 CA CA B 201 1555 1555 2.37 LINK CA CA B 201 O HOH B 364 1555 1555 2.21 LINK CA CA B 201 O HOH B 365 1555 1555 2.18 SITE 1 AC1 18 TYR A 33 PHE A 43 ASP A 44 PHE A 53 SITE 2 AC1 18 MET A 61 VAL A 62 ILE A 63 TRP A 66 SITE 3 AC1 18 GLY A 88 TYR A 89 ILE A 98 PHE A 106 SITE 4 AC1 18 HOH A 383 HOH A 389 HOH A 403 GLY B 60 SITE 5 AC1 18 MET B 61 FK5 B 200 SITE 1 AC2 6 ASP A 51 PRO A 52 ASP A 112 VAL A 113 SITE 2 AC2 6 HOH A 369 HOH A 370 SITE 1 AC3 18 GLY A 60 MET A 61 FK5 A 200 TYR B 33 SITE 2 AC3 18 PHE B 43 ASP B 44 ARG B 49 PHE B 53 SITE 3 AC3 18 MET B 61 VAL B 62 ILE B 63 TRP B 66 SITE 4 AC3 18 GLY B 88 TYR B 89 PHE B 106 HOH B 359 SITE 5 AC3 18 HOH B 391 HOH B 403 SITE 1 AC4 6 ASP B 51 PRO B 52 ASP B 112 VAL B 113 SITE 2 AC4 6 HOH B 364 HOH B 365 CRYST1 106.440 49.050 66.640 90.00 123.05 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009395 0.000000 0.006112 0.00000 SCALE2 0.000000 0.020387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017902 0.00000