HEADER ISOMERASE 29-FEB-12 4DZ3 TITLE CRYSTAL STRUCTURE OF A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE WITH TITLE 2 SURFACE MUTATION M61H FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED WITH TITLE 3 FK506 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.2.1.8; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 320372; SOURCE 4 STRAIN: 1710B_A0907; SOURCE 5 GENE: BURPS1710B_A0907; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-HISSMT KEYWDS SSGCID, ISOMERASE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 2 CENTER FOR INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 13-SEP-23 4DZ3 1 REMARK SEQADV LINK REVDAT 3 19-MAR-14 4DZ3 1 REMARK REVDAT 2 12-MAR-14 4DZ3 1 JRNL REVDAT 1 28-MAR-12 4DZ3 0 JRNL AUTH D.W.BEGLEY,D.FOX,D.JENNER,C.JULI,P.G.PIERCE,J.ABENDROTH, JRNL AUTH 2 M.MURUTHI,K.SAFFORD,V.ANDERSON,K.ATKINS,S.R.BARNES,S.O.MOEN, JRNL AUTH 3 A.C.RAYMOND,R.STACY,P.J.MYLER,B.L.STAKER,N.J.HARMER, JRNL AUTH 4 I.H.NORVILLE,U.HOLZGRABE,M.SARKAR-TYSON,T.E.EDWARDS, JRNL AUTH 5 D.D.LORIMER JRNL TITL A STRUCTURAL BIOLOGY APPROACH ENABLES THE DEVELOPMENT OF JRNL TITL 2 ANTIMICROBIALS TARGETING BACTERIAL IMMUNOPHILINS. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 58 1458 2014 JRNL REFN ISSN 0066-4804 JRNL PMID 24366729 JRNL DOI 10.1128/AAC.01875-13 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 991 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1223 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1629 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 160 REMARK 3 SOLVENT ATOMS : 131 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31000 REMARK 3 B22 (A**2) : -1.21000 REMARK 3 B33 (A**2) : 1.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.568 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1843 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1214 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2503 ; 1.518 ; 2.043 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2968 ; 0.993 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ; 5.886 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;22.514 ;24.030 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 244 ;10.932 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;12.401 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 285 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2050 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 359 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2958 25.5666 -14.5341 REMARK 3 T TENSOR REMARK 3 T11: 0.0238 T22: 0.0166 REMARK 3 T33: 0.1056 T12: -0.0015 REMARK 3 T13: -0.0283 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 2.2505 L22: 2.3267 REMARK 3 L33: 2.7459 L12: 0.1410 REMARK 3 L13: 0.5453 L23: 0.5306 REMARK 3 S TENSOR REMARK 3 S11: 0.1638 S12: -0.0518 S13: -0.2137 REMARK 3 S21: 0.1659 S22: 0.0444 S23: -0.1183 REMARK 3 S31: 0.1023 S32: 0.1117 S33: -0.2082 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3550 6.3110 -14.1008 REMARK 3 T TENSOR REMARK 3 T11: 0.0260 T22: 0.0116 REMARK 3 T33: 0.0472 T12: -0.0008 REMARK 3 T13: 0.0122 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.2909 L22: 1.4383 REMARK 3 L33: 2.6025 L12: -0.1382 REMARK 3 L13: 0.3402 L23: -0.8523 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: 0.0392 S13: 0.0429 REMARK 3 S21: 0.1060 S22: 0.0128 S23: 0.0409 REMARK 3 S31: -0.1357 S32: -0.0731 S33: -0.0326 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES: WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4DZ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000070963. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978720 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19388 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.870 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3VAW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INTERNAL TRACKING NUMBER 226597. JCSG REMARK 280 WELL D10. 0.1M CACODYLATE PH 6.5, 200MM CALCIUM ACETATE, 30.0% W/ REMARK 280 V PEG400, 20% ETHYLENE GLYCOL CRYO. BUPSA.00130.A.D227 PD00193 REMARK 280 25.2MG/ML., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.58000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.58000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.49000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.29000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.49000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.29000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.58000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.49000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.29000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.58000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.49000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.29000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 304 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 17 CG CD OE1 OE2 REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 41 CG CD OE1 NE2 REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 97 CG1 CG2 REMARK 470 ASN A 101 CG OD1 ND2 REMARK 470 ARG B 24 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 41 CG CD OE1 NE2 REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 ARG B 92 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 97 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 97 -53.23 -130.75 REMARK 500 VAL B 97 -55.53 -129.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 51 OD1 REMARK 620 2 PRO A 52 O 85.8 REMARK 620 3 HOH A 321 O 154.8 84.1 REMARK 620 4 HOH A 326 O 77.2 101.4 82.2 REMARK 620 5 ASP B 112 OD2 121.4 83.0 80.2 161.2 REMARK 620 6 ASP B 112 OD1 75.0 99.5 129.5 143.6 50.9 REMARK 620 7 VAL B 113 O 102.5 171.6 88.4 81.4 91.9 82.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 112 OD2 REMARK 620 2 ASP A 112 OD1 51.1 REMARK 620 3 VAL A 113 OXT 87.8 80.3 REMARK 620 4 ASP B 51 OD1 120.5 72.8 102.5 REMARK 620 5 PRO B 52 O 88.7 104.9 169.7 87.7 REMARK 620 6 HOH B 321 O 161.3 143.3 84.9 77.9 95.5 REMARK 620 7 HOH B 333 O 78.8 128.5 87.5 158.1 82.3 83.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FK5 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FK5 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 209 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VAW RELATED DB: PDB REMARK 900 RELATED ID: 3UQB RELATED DB: PDB REMARK 900 RELATED ID: 3UQA RELATED DB: PDB REMARK 900 RELATED ID: 3UF8 RELATED DB: PDB REMARK 900 RELATED ID: 2L2S RELATED DB: PDB REMARK 900 RELATED ID: 2KO7 RELATED DB: PDB REMARK 900 RELATED ID: 2KE0 RELATED DB: PDB REMARK 900 RELATED ID: 4DZ2 RELATED DB: PDB REMARK 900 SURFACE MUTATION R92G REMARK 900 RELATED ID: 16406 RELATED DB: BMRB REMARK 900 RELATED ID: 17151 RELATED DB: BMRB REMARK 900 RELATED ID: 16491 RELATED DB: BMRB REMARK 900 RELATED ID: SSGCID-BUPSA.00130.A RELATED DB: TARGETTRACK DBREF 4DZ3 A 2 113 UNP Q3JK38 Q3JK38_BURP1 2 113 DBREF 4DZ3 B 2 113 UNP Q3JK38 Q3JK38_BURP1 2 113 SEQADV 4DZ3 SER A 1 UNP Q3JK38 EXPRESSION TAG SEQADV 4DZ3 HIS A 61 UNP Q3JK38 MET 61 ENGINEERED MUTATION SEQADV 4DZ3 SER B 1 UNP Q3JK38 EXPRESSION TAG SEQADV 4DZ3 HIS B 61 UNP Q3JK38 MET 61 ENGINEERED MUTATION SEQRES 1 A 113 SER THR VAL VAL THR THR GLU SER GLY LEU LYS TYR GLU SEQRES 2 A 113 ASP LEU THR GLU GLY SER GLY ALA GLU ALA ARG ALA GLY SEQRES 3 A 113 GLN THR VAL SER VAL HIS TYR THR GLY TRP LEU THR ASP SEQRES 4 A 113 GLY GLN LYS PHE ASP SER SER LYS ASP ARG ASN ASP PRO SEQRES 5 A 113 PHE ALA PHE VAL LEU GLY GLY GLY HIS VAL ILE LYS GLY SEQRES 6 A 113 TRP ASP GLU GLY VAL GLN GLY MET LYS VAL GLY GLY VAL SEQRES 7 A 113 ARG ARG LEU THR ILE PRO PRO GLN LEU GLY TYR GLY ALA SEQRES 8 A 113 ARG GLY ALA GLY GLY VAL ILE PRO PRO ASN ALA THR LEU SEQRES 9 A 113 VAL PHE GLU VAL GLU LEU LEU ASP VAL SEQRES 1 B 113 SER THR VAL VAL THR THR GLU SER GLY LEU LYS TYR GLU SEQRES 2 B 113 ASP LEU THR GLU GLY SER GLY ALA GLU ALA ARG ALA GLY SEQRES 3 B 113 GLN THR VAL SER VAL HIS TYR THR GLY TRP LEU THR ASP SEQRES 4 B 113 GLY GLN LYS PHE ASP SER SER LYS ASP ARG ASN ASP PRO SEQRES 5 B 113 PHE ALA PHE VAL LEU GLY GLY GLY HIS VAL ILE LYS GLY SEQRES 6 B 113 TRP ASP GLU GLY VAL GLN GLY MET LYS VAL GLY GLY VAL SEQRES 7 B 113 ARG ARG LEU THR ILE PRO PRO GLN LEU GLY TYR GLY ALA SEQRES 8 B 113 ARG GLY ALA GLY GLY VAL ILE PRO PRO ASN ALA THR LEU SEQRES 9 B 113 VAL PHE GLU VAL GLU LEU LEU ASP VAL HET FK5 A 201 57 HET CA A 202 1 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET ACT A 206 4 HET FK5 B 201 57 HET CA B 202 1 HET EDO B 203 4 HET EDO B 204 4 HET EDO B 205 4 HET ACT B 206 4 HET ACT B 207 4 HET ACT B 208 4 HET ACT B 209 4 HETNAM FK5 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN FK5 K506 HETSYN EDO ETHYLENE GLYCOL FORMUL 3 FK5 2(C44 H69 N O12) FORMUL 4 CA 2(CA 2+) FORMUL 5 EDO 6(C2 H6 O2) FORMUL 8 ACT 5(C2 H3 O2 1-) FORMUL 18 HOH *131(H2 O) HELIX 1 1 ILE A 63 VAL A 70 1 8 HELIX 2 2 PRO A 84 GLY A 88 5 5 HELIX 3 3 LYS B 47 ASN B 50 5 4 HELIX 4 4 ILE B 63 VAL B 70 1 8 HELIX 5 5 PRO B 84 GLY B 88 5 5 SHEET 1 A 6 VAL A 3 THR A 5 0 SHEET 2 A 6 LYS A 11 THR A 16 -1 O TYR A 12 N VAL A 4 SHEET 3 A 6 VAL A 78 ILE A 83 -1 O THR A 82 N LYS A 11 SHEET 4 A 6 LEU A 104 ASP A 112 -1 O LEU A 104 N ILE A 83 SHEET 5 A 6 THR A 28 LEU A 37 -1 N HIS A 32 O GLU A 109 SHEET 6 A 6 LYS A 42 SER A 45 -1 O ASP A 44 N GLY A 35 SHEET 1 B 6 VAL A 3 THR A 5 0 SHEET 2 B 6 LYS A 11 THR A 16 -1 O TYR A 12 N VAL A 4 SHEET 3 B 6 VAL A 78 ILE A 83 -1 O THR A 82 N LYS A 11 SHEET 4 B 6 LEU A 104 ASP A 112 -1 O LEU A 104 N ILE A 83 SHEET 5 B 6 THR A 28 LEU A 37 -1 N HIS A 32 O GLU A 109 SHEET 6 B 6 PHE A 53 VAL A 56 -1 O PHE A 53 N VAL A 31 SHEET 1 C 6 VAL B 4 THR B 5 0 SHEET 2 C 6 LYS B 11 THR B 16 -1 O TYR B 12 N VAL B 4 SHEET 3 C 6 VAL B 78 ILE B 83 -1 O ARG B 80 N GLU B 13 SHEET 4 C 6 LEU B 104 ASP B 112 -1 O VAL B 108 N ARG B 79 SHEET 5 C 6 THR B 28 LEU B 37 -1 N HIS B 32 O GLU B 109 SHEET 6 C 6 LYS B 42 SER B 45 -1 O ASP B 44 N GLY B 35 SHEET 1 D 6 VAL B 4 THR B 5 0 SHEET 2 D 6 LYS B 11 THR B 16 -1 O TYR B 12 N VAL B 4 SHEET 3 D 6 VAL B 78 ILE B 83 -1 O ARG B 80 N GLU B 13 SHEET 4 D 6 LEU B 104 ASP B 112 -1 O VAL B 108 N ARG B 79 SHEET 5 D 6 THR B 28 LEU B 37 -1 N HIS B 32 O GLU B 109 SHEET 6 D 6 PHE B 53 VAL B 56 -1 O PHE B 53 N VAL B 31 LINK OD1 ASP A 51 CA CA B 202 1555 1555 2.37 LINK O PRO A 52 CA CA B 202 1555 1555 2.30 LINK OD2 ASP A 112 CA CA A 202 1555 1555 2.42 LINK OD1 ASP A 112 CA CA A 202 1555 1555 2.58 LINK OXT VAL A 113 CA CA A 202 1555 1555 2.39 LINK CA CA A 202 OD1 ASP B 51 1555 1555 2.29 LINK CA CA A 202 O PRO B 52 1555 1555 2.36 LINK CA CA A 202 O HOH B 321 1555 1555 2.45 LINK CA CA A 202 O HOH B 333 1555 1555 2.36 LINK O HOH A 321 CA CA B 202 1555 1555 2.29 LINK O HOH A 326 CA CA B 202 1555 1555 2.37 LINK OD2 ASP B 112 CA CA B 202 1555 1555 2.44 LINK OD1 ASP B 112 CA CA B 202 1555 1555 2.63 LINK O VAL B 113 CA CA B 202 1555 1555 2.37 SITE 1 AC1 16 TYR A 33 PHE A 43 ASP A 44 PHE A 53 SITE 2 AC1 16 HIS A 61 VAL A 62 ILE A 63 TRP A 66 SITE 3 AC1 16 GLY A 88 TYR A 89 PHE A 106 HOH A 357 SITE 4 AC1 16 GLY B 60 HIS B 61 VAL B 62 FK5 B 201 SITE 1 AC2 6 ASP A 112 VAL A 113 ASP B 51 PRO B 52 SITE 2 AC2 6 HOH B 321 HOH B 333 SITE 1 AC3 4 THR A 28 ALA B 54 VAL B 56 EDO B 203 SITE 1 AC4 5 THR A 2 VAL A 4 GLU A 13 ASP A 14 SITE 2 AC4 5 HOH A 353 SITE 1 AC5 2 SER A 1 THR B 6 SITE 1 AC6 2 TYR A 33 THR A 34 SITE 1 AC7 17 GLY A 60 HIS A 61 VAL A 62 FK5 A 201 SITE 2 AC7 17 TYR B 33 PHE B 43 ASP B 44 ARG B 49 SITE 3 AC7 17 PHE B 53 HIS B 61 VAL B 62 ILE B 63 SITE 4 AC7 17 TRP B 66 GLY B 88 TYR B 89 PHE B 106 SITE 5 AC7 17 ACT B 208 SITE 1 AC8 6 ASP A 51 PRO A 52 HOH A 321 HOH A 326 SITE 2 AC8 6 ASP B 112 VAL B 113 SITE 1 AC9 3 VAL A 56 EDO A 203 THR B 28 SITE 1 BC1 3 THR B 2 GLU B 13 ASP B 14 SITE 1 BC2 6 SER A 30 ASP A 112 HOH A 341 SER B 30 SITE 2 BC2 6 PRO B 52 ASP B 112 SITE 1 BC3 2 HIS B 32 THR B 34 SITE 1 BC4 4 THR B 38 ASP B 39 THR B 82 VAL B 105 SITE 1 BC5 5 GLN B 86 GLY B 88 GLY B 90 FK5 B 201 SITE 2 BC5 5 HOH B 370 SITE 1 BC6 5 LYS A 11 HOH A 361 THR B 5 LYS B 11 SITE 2 BC6 5 HOH B 344 CRYST1 48.980 106.580 107.160 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009332 0.00000