HEADER MOTOR PROTEIN 02-MAR-12 4E08 TITLE CRYSTAL STRUCTURE OF DROSOPHILA MELANOGASTER DJ-1BETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DJ-1 BETA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DJ-1BETA, GH09983P; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CG1349, DJ-1 BETA, DJ-1-BETA, DJ-1BETA, DMEL_CG1349; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS FLAVODOXIN-LIKE FOLD, STRESS RESPONSE, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LIN,J.PRAHLAD,M.A.WILSON REVDAT 4 13-SEP-23 4E08 1 REMARK SEQADV REVDAT 3 20-JUN-12 4E08 1 JRNL REVDAT 2 02-MAY-12 4E08 1 JRNL REVDAT 1 21-MAR-12 4E08 0 JRNL AUTH J.LIN,J.PRAHLAD,M.A.WILSON JRNL TITL CONSERVATION OF OXIDATIVE PROTEIN STABILIZATION IN AN INSECT JRNL TITL 2 HOMOLOGUE OF PARKINSONISM-ASSOCIATED PROTEIN DJ-1. JRNL REF BIOCHEMISTRY V. 51 3799 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22515803 JRNL DOI 10.1021/BI3003296 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0116 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 23814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1267 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1314 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2680 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.79000 REMARK 3 B22 (A**2) : 1.79000 REMARK 3 B33 (A**2) : -2.69000 REMARK 3 B12 (A**2) : 0.90000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.180 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2718 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3677 ; 1.503 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 6.069 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;37.144 ;25.682 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 475 ;14.536 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;22.047 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 443 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1964 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 186 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6331 -15.1495 28.5415 REMARK 3 T TENSOR REMARK 3 T11: 0.0945 T22: 0.0461 REMARK 3 T33: 0.0348 T12: -0.0549 REMARK 3 T13: 0.0450 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 1.9480 L22: 1.3286 REMARK 3 L33: 2.1926 L12: -0.6136 REMARK 3 L13: -0.1252 L23: -0.0818 REMARK 3 S TENSOR REMARK 3 S11: 0.2126 S12: -0.0977 S13: 0.2380 REMARK 3 S21: 0.1411 S22: -0.0977 S23: -0.0337 REMARK 3 S31: -0.2860 S32: 0.2388 S33: -0.1149 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 186 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4812 -25.7480 7.9722 REMARK 3 T TENSOR REMARK 3 T11: 0.0406 T22: 0.1036 REMARK 3 T33: 0.0120 T12: 0.0596 REMARK 3 T13: -0.0161 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.4841 L22: 2.0004 REMARK 3 L33: 2.5294 L12: -0.3606 REMARK 3 L13: 0.3218 L23: 0.1384 REMARK 3 S TENSOR REMARK 3 S11: 0.1618 S12: 0.2889 S13: -0.0361 REMARK 3 S21: -0.1106 S22: -0.1109 S23: 0.1292 REMARK 3 S31: 0.0736 S32: -0.0463 S33: -0.0509 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 4E08 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : K-B PAIR OF BIOMORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25116 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 76.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.58700 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, PHENIX REMARK 200 STARTING MODEL: 2OR3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% POLYETHYLENE GLYCOL 4000, 0.2 M REMARK 280 AMMONIUM SULFATE, 0.1 M SODIUM ACETATE PH=4.6, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K, PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 151.44867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.72433 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.72433 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 151.44867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 201 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 ASN A 187 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 ASN B 187 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 307 O HOH A 438 1.81 REMARK 500 O HOH B 283 O HOH B 285 2.02 REMARK 500 OE2 GLU B 14 O HOH B 330 2.14 REMARK 500 O HOH A 328 O HOH A 381 2.15 REMARK 500 O HOH B 242 O HOH B 272 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 104 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG B 153 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 104 -114.42 75.74 REMARK 500 CYS B 104 -109.59 83.63 REMARK 500 ASP B 140 62.75 -111.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 DBREF 4E08 A 1 187 UNP Q9VA37 Q9VA37_DROME 19 205 DBREF 4E08 B 1 187 UNP Q9VA37 Q9VA37_DROME 19 205 SEQADV 4E08 GLY A -2 UNP Q9VA37 EXPRESSION TAG SEQADV 4E08 SER A -1 UNP Q9VA37 EXPRESSION TAG SEQADV 4E08 HIS A 0 UNP Q9VA37 EXPRESSION TAG SEQADV 4E08 GLY B -2 UNP Q9VA37 EXPRESSION TAG SEQADV 4E08 SER B -1 UNP Q9VA37 EXPRESSION TAG SEQADV 4E08 HIS B 0 UNP Q9VA37 EXPRESSION TAG SEQRES 1 A 190 GLY SER HIS MET SER LYS SER ALA LEU VAL ILE LEU ALA SEQRES 2 A 190 PRO GLY ALA GLU GLU MET GLU PHE ILE ILE ALA ALA ASP SEQRES 3 A 190 VAL LEU ARG ARG ALA GLY ILE LYS VAL THR VAL ALA GLY SEQRES 4 A 190 LEU ASN GLY GLY GLU ALA VAL LYS CYS SER ARG ASP VAL SEQRES 5 A 190 GLN ILE LEU PRO ASP THR SER LEU ALA GLN VAL ALA SER SEQRES 6 A 190 ASP LYS PHE ASP VAL VAL VAL LEU PRO GLY GLY LEU GLY SEQRES 7 A 190 GLY SER ASN ALA MET GLY GLU SER SER LEU VAL GLY ASP SEQRES 8 A 190 LEU LEU ARG SER GLN GLU SER GLY GLY GLY LEU ILE ALA SEQRES 9 A 190 ALA ILE CYS ALA ALA PRO THR VAL LEU ALA LYS HIS GLY SEQRES 10 A 190 VAL ALA SER GLY LYS SER LEU THR SER TYR PRO SER MET SEQRES 11 A 190 LYS PRO GLN LEU VAL ASN ASN TYR SER TYR VAL ASP ASP SEQRES 12 A 190 LYS THR VAL VAL LYS ASP GLY ASN LEU ILE THR SER ARG SEQRES 13 A 190 GLY PRO GLY THR ALA TYR GLU PHE ALA LEU LYS ILE ALA SEQRES 14 A 190 GLU GLU LEU ALA GLY LYS GLU LYS VAL GLN GLU VAL ALA SEQRES 15 A 190 LYS GLY LEU LEU VAL ALA TYR ASN SEQRES 1 B 190 GLY SER HIS MET SER LYS SER ALA LEU VAL ILE LEU ALA SEQRES 2 B 190 PRO GLY ALA GLU GLU MET GLU PHE ILE ILE ALA ALA ASP SEQRES 3 B 190 VAL LEU ARG ARG ALA GLY ILE LYS VAL THR VAL ALA GLY SEQRES 4 B 190 LEU ASN GLY GLY GLU ALA VAL LYS CYS SER ARG ASP VAL SEQRES 5 B 190 GLN ILE LEU PRO ASP THR SER LEU ALA GLN VAL ALA SER SEQRES 6 B 190 ASP LYS PHE ASP VAL VAL VAL LEU PRO GLY GLY LEU GLY SEQRES 7 B 190 GLY SER ASN ALA MET GLY GLU SER SER LEU VAL GLY ASP SEQRES 8 B 190 LEU LEU ARG SER GLN GLU SER GLY GLY GLY LEU ILE ALA SEQRES 9 B 190 ALA ILE CYS ALA ALA PRO THR VAL LEU ALA LYS HIS GLY SEQRES 10 B 190 VAL ALA SER GLY LYS SER LEU THR SER TYR PRO SER MET SEQRES 11 B 190 LYS PRO GLN LEU VAL ASN ASN TYR SER TYR VAL ASP ASP SEQRES 12 B 190 LYS THR VAL VAL LYS ASP GLY ASN LEU ILE THR SER ARG SEQRES 13 B 190 GLY PRO GLY THR ALA TYR GLU PHE ALA LEU LYS ILE ALA SEQRES 14 B 190 GLU GLU LEU ALA GLY LYS GLU LYS VAL GLN GLU VAL ALA SEQRES 15 B 190 LYS GLY LEU LEU VAL ALA TYR ASN HET SO4 A 201 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *278(H2 O) HELIX 1 1 GLU A 14 ALA A 28 1 15 HELIX 2 2 ALA A 58 ALA A 61 5 4 HELIX 3 3 GLY A 73 SER A 83 1 11 HELIX 4 4 SER A 83 GLY A 96 1 14 HELIX 5 5 ALA A 106 HIS A 113 1 8 HELIX 6 6 TYR A 124 LEU A 131 5 8 HELIX 7 7 GLY A 154 GLY A 156 5 3 HELIX 8 8 THR A 157 GLY A 171 1 15 HELIX 9 9 GLY A 171 LEU A 183 1 13 HELIX 10 10 GLU B 14 ALA B 28 1 15 HELIX 11 11 ALA B 58 ALA B 61 5 4 HELIX 12 12 GLY B 73 GLU B 82 1 10 HELIX 13 13 SER B 83 GLY B 96 1 14 HELIX 14 14 ALA B 106 HIS B 113 1 8 HELIX 15 15 TYR B 124 SER B 126 5 3 HELIX 16 16 MET B 127 VAL B 132 1 6 HELIX 17 17 GLY B 154 GLY B 156 5 3 HELIX 18 18 THR B 157 GLY B 171 1 15 HELIX 19 19 GLY B 171 LEU B 183 1 13 SHEET 1 A 7 THR A 55 SER A 56 0 SHEET 2 A 7 LYS A 31 GLY A 36 1 N GLY A 36 O THR A 55 SHEET 3 A 7 SER A 4 LEU A 9 1 N VAL A 7 O THR A 33 SHEET 4 A 7 VAL A 67 LEU A 70 1 O VAL A 69 N LEU A 6 SHEET 5 A 7 LEU A 99 ILE A 103 1 O ALA A 101 N LEU A 70 SHEET 6 A 7 LEU A 149 SER A 152 1 O ILE A 150 N ILE A 100 SHEET 7 A 7 VAL A 143 ASP A 146 -1 N VAL A 144 O THR A 151 SHEET 1 B 4 VAL A 43 LYS A 44 0 SHEET 2 B 4 GLN A 50 LEU A 52 -1 O ILE A 51 N VAL A 43 SHEET 3 B 4 GLN B 50 LEU B 52 -1 O GLN B 50 N LEU A 52 SHEET 4 B 4 VAL B 43 LYS B 44 -1 N VAL B 43 O ILE B 51 SHEET 1 C 2 SER A 120 LEU A 121 0 SHEET 2 C 2 SER A 136 TYR A 137 1 O SER A 136 N LEU A 121 SHEET 1 D 7 THR B 55 SER B 56 0 SHEET 2 D 7 LYS B 31 GLY B 36 1 N GLY B 36 O THR B 55 SHEET 3 D 7 SER B 4 LEU B 9 1 N ALA B 5 O THR B 33 SHEET 4 D 7 VAL B 67 LEU B 70 1 O VAL B 69 N LEU B 6 SHEET 5 D 7 LEU B 99 ILE B 103 1 O ALA B 101 N LEU B 70 SHEET 6 D 7 LEU B 149 SER B 152 1 O ILE B 150 N ILE B 100 SHEET 7 D 7 VAL B 143 ASP B 146 -1 N VAL B 144 O THR B 151 SHEET 1 E 2 SER B 120 LEU B 121 0 SHEET 2 E 2 SER B 136 TYR B 137 1 O SER B 136 N LEU B 121 SITE 1 AC1 5 GLN A 59 GLN A 130 ASN A 133 HOH A 356 SITE 2 AC1 5 HOH A 373 CRYST1 52.520 52.520 227.173 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019040 0.010993 0.000000 0.00000 SCALE2 0.000000 0.021986 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004402 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.489001 -0.867377 0.092386 -6.71180 1 MTRIX2 2 -0.867238 0.472062 -0.158291 -0.44819 1 MTRIX3 2 0.093687 -0.157525 -0.983061 32.18166 1