data_4E16 # _entry.id 4E16 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4E16 pdb_00004e16 10.2210/pdb4e16/pdb RCSB RCSB071038 ? ? WWPDB D_1000071038 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id CSGID-IDP05539 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4E16 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-03-05 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Osipiuk, J.' 1 'Nocek, B.' 2 'Makowska-Grzyska, M.' 3 'Papazisi, L.' 4 'Anderson, W.F.' 5 'Joachimiak, A.' 6 'Center for Structural Genomics of Infectious Diseases (CSGID)' 7 # _citation.id primary _citation.title 'Precorrin-4 C(11)-methyltransferase from Clostridium difficile' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Osipiuk, J.' 1 ? primary 'Nocek, B.' 2 ? primary 'Makowska-Grzyska, M.' 3 ? primary 'Papazisi, L.' 4 ? primary 'Anderson, W.F.' 5 ? primary 'Joachimiak, A.' 6 ? # _cell.length_a 60.245 _cell.length_b 60.245 _cell.length_c 147.955 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4E16 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.entry_id 4E16 _symmetry.Int_Tables_number 96 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'precorrin-4 C(11)-methyltransferase' _entity.formula_weight 28221.105 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 2.1.1.- _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'precorrin-3 methylase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SNAMNKVHFVGAGPGDKELITLKGYKLLSNADVVIYAGSLVNPELLEYCKEDCQIHNSAHMDLQEIIDVMREGIENNKSV VRLQTGDFSIYGSIREQVEDLNKLNIDYDCTPGVSSFLGAASSLGVEYTVPEISQSVIITRMEGRTPVPEKESIQSYAKH QTSMVIFLSVQEIEKVVSKLLEGGYPKDTPIAVIYKATWADEKIVKGTLSDIAVKVKENNINKTALIMVGRFLGEEYNNS KLYDKDFKHEYRG ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMNKVHFVGAGPGDKELITLKGYKLLSNADVVIYAGSLVNPELLEYCKEDCQIHNSAHMDLQEIIDVMREGIENNKSV VRLQTGDFSIYGSIREQVEDLNKLNIDYDCTPGVSSFLGAASSLGVEYTVPEISQSVIITRMEGRTPVPEKESIQSYAKH QTSMVIFLSVQEIEKVVSKLLEGGYPKDTPIAVIYKATWADEKIVKGTLSDIAVKVKENNINKTALIMVGRFLGEEYNNS KLYDKDFKHEYRG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier CSGID-IDP05539 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MET n 1 5 ASN n 1 6 LYS n 1 7 VAL n 1 8 HIS n 1 9 PHE n 1 10 VAL n 1 11 GLY n 1 12 ALA n 1 13 GLY n 1 14 PRO n 1 15 GLY n 1 16 ASP n 1 17 LYS n 1 18 GLU n 1 19 LEU n 1 20 ILE n 1 21 THR n 1 22 LEU n 1 23 LYS n 1 24 GLY n 1 25 TYR n 1 26 LYS n 1 27 LEU n 1 28 LEU n 1 29 SER n 1 30 ASN n 1 31 ALA n 1 32 ASP n 1 33 VAL n 1 34 VAL n 1 35 ILE n 1 36 TYR n 1 37 ALA n 1 38 GLY n 1 39 SER n 1 40 LEU n 1 41 VAL n 1 42 ASN n 1 43 PRO n 1 44 GLU n 1 45 LEU n 1 46 LEU n 1 47 GLU n 1 48 TYR n 1 49 CYS n 1 50 LYS n 1 51 GLU n 1 52 ASP n 1 53 CYS n 1 54 GLN n 1 55 ILE n 1 56 HIS n 1 57 ASN n 1 58 SER n 1 59 ALA n 1 60 HIS n 1 61 MET n 1 62 ASP n 1 63 LEU n 1 64 GLN n 1 65 GLU n 1 66 ILE n 1 67 ILE n 1 68 ASP n 1 69 VAL n 1 70 MET n 1 71 ARG n 1 72 GLU n 1 73 GLY n 1 74 ILE n 1 75 GLU n 1 76 ASN n 1 77 ASN n 1 78 LYS n 1 79 SER n 1 80 VAL n 1 81 VAL n 1 82 ARG n 1 83 LEU n 1 84 GLN n 1 85 THR n 1 86 GLY n 1 87 ASP n 1 88 PHE n 1 89 SER n 1 90 ILE n 1 91 TYR n 1 92 GLY n 1 93 SER n 1 94 ILE n 1 95 ARG n 1 96 GLU n 1 97 GLN n 1 98 VAL n 1 99 GLU n 1 100 ASP n 1 101 LEU n 1 102 ASN n 1 103 LYS n 1 104 LEU n 1 105 ASN n 1 106 ILE n 1 107 ASP n 1 108 TYR n 1 109 ASP n 1 110 CYS n 1 111 THR n 1 112 PRO n 1 113 GLY n 1 114 VAL n 1 115 SER n 1 116 SER n 1 117 PHE n 1 118 LEU n 1 119 GLY n 1 120 ALA n 1 121 ALA n 1 122 SER n 1 123 SER n 1 124 LEU n 1 125 GLY n 1 126 VAL n 1 127 GLU n 1 128 TYR n 1 129 THR n 1 130 VAL n 1 131 PRO n 1 132 GLU n 1 133 ILE n 1 134 SER n 1 135 GLN n 1 136 SER n 1 137 VAL n 1 138 ILE n 1 139 ILE n 1 140 THR n 1 141 ARG n 1 142 MET n 1 143 GLU n 1 144 GLY n 1 145 ARG n 1 146 THR n 1 147 PRO n 1 148 VAL n 1 149 PRO n 1 150 GLU n 1 151 LYS n 1 152 GLU n 1 153 SER n 1 154 ILE n 1 155 GLN n 1 156 SER n 1 157 TYR n 1 158 ALA n 1 159 LYS n 1 160 HIS n 1 161 GLN n 1 162 THR n 1 163 SER n 1 164 MET n 1 165 VAL n 1 166 ILE n 1 167 PHE n 1 168 LEU n 1 169 SER n 1 170 VAL n 1 171 GLN n 1 172 GLU n 1 173 ILE n 1 174 GLU n 1 175 LYS n 1 176 VAL n 1 177 VAL n 1 178 SER n 1 179 LYS n 1 180 LEU n 1 181 LEU n 1 182 GLU n 1 183 GLY n 1 184 GLY n 1 185 TYR n 1 186 PRO n 1 187 LYS n 1 188 ASP n 1 189 THR n 1 190 PRO n 1 191 ILE n 1 192 ALA n 1 193 VAL n 1 194 ILE n 1 195 TYR n 1 196 LYS n 1 197 ALA n 1 198 THR n 1 199 TRP n 1 200 ALA n 1 201 ASP n 1 202 GLU n 1 203 LYS n 1 204 ILE n 1 205 VAL n 1 206 LYS n 1 207 GLY n 1 208 THR n 1 209 LEU n 1 210 SER n 1 211 ASP n 1 212 ILE n 1 213 ALA n 1 214 VAL n 1 215 LYS n 1 216 VAL n 1 217 LYS n 1 218 GLU n 1 219 ASN n 1 220 ASN n 1 221 ILE n 1 222 ASN n 1 223 LYS n 1 224 THR n 1 225 ALA n 1 226 LEU n 1 227 ILE n 1 228 MET n 1 229 VAL n 1 230 GLY n 1 231 ARG n 1 232 PHE n 1 233 LEU n 1 234 GLY n 1 235 GLU n 1 236 GLU n 1 237 TYR n 1 238 ASN n 1 239 ASN n 1 240 SER n 1 241 LYS n 1 242 LEU n 1 243 TYR n 1 244 ASP n 1 245 LYS n 1 246 ASP n 1 247 PHE n 1 248 LYS n 1 249 HIS n 1 250 GLU n 1 251 TYR n 1 252 ARG n 1 253 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'cbiF, CD630_34260' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 630 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Clostridium difficile' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272563 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q180S3_CLOD6 _struct_ref.pdbx_db_accession Q180S3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNKVHFVGAGPGDKELITLKGYKLLSNADVVIYAGSLVNPELLEYCKEDCQIHNSAHMDLQEIIDVMREGIENNKSVVRL QTGDFSIYGSIREQVEDLNKLNIDYDCTPGVSSFLGAASSLGVEYTVPEISQSVIITRMEGRTPVPEKESIQSYAKHQTS MVIFLSVQEIEKVVSKLLEGGYPKDTPIAVIYKATWADEKIVKGTLSDIAVKVKENNINKTALIMVGRFLGEEYNNSKLY DKDFKHEYRG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4E16 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 253 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q180S3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 250 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 250 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4E16 SER A 1 ? UNP Q180S3 ? ? 'expression tag' -2 1 1 4E16 ASN A 2 ? UNP Q180S3 ? ? 'expression tag' -1 2 1 4E16 ALA A 3 ? UNP Q180S3 ? ? 'expression tag' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4E16 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.pdbx_details '20% PEG3350, 0.2 M sodium thiocyanate, pH 6.9, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-06-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 4E16 _reflns.d_resolution_high 2.490 _reflns.d_resolution_low 55.797 _reflns.number_obs 10113 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_netI_over_sigmaI 11.6 _reflns.pdbx_chi_squared 1.489 _reflns.pdbx_redundancy 12.1 _reflns.percent_possible_obs 99.3 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 10113 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 82 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.490 2.530 ? ? ? 0.924 2.59 ? 0.964 8.90 ? 477 97.1 1 1 2.530 2.580 ? ? ? 0.961 ? ? 0.894 10.20 ? 489 100.0 2 1 2.580 2.630 ? ? ? 0.964 ? ? 0.963 11.10 ? 489 100.0 3 1 2.630 2.680 ? ? ? 0.783 ? ? 0.941 12.00 ? 496 100.0 4 1 2.680 2.740 ? ? ? 0.740 ? ? 1.051 12.50 ? 504 100.0 5 1 2.740 2.800 ? ? ? 0.591 ? ? 1.084 12.90 ? 479 100.0 6 1 2.800 2.870 ? ? ? 0.525 ? ? 1.090 12.90 ? 497 100.0 7 1 2.870 2.950 ? ? ? 0.385 ? ? 1.168 13.10 ? 492 100.0 8 1 2.950 3.040 ? ? ? 0.335 ? ? 1.174 13.00 ? 509 100.0 9 1 3.040 3.140 ? ? ? 0.227 ? ? 1.285 13.00 ? 499 100.0 10 1 3.140 3.250 ? ? ? 0.211 ? ? 1.331 12.90 ? 490 100.0 11 1 3.250 3.380 ? ? ? 0.168 ? ? 1.456 12.80 ? 504 100.0 12 1 3.380 3.530 ? ? ? 0.133 ? ? 1.625 12.80 ? 517 100.0 13 1 3.530 3.720 ? ? ? 0.110 ? ? 1.715 12.80 ? 498 100.0 14 1 3.720 3.950 ? ? ? 0.101 ? ? 1.816 12.70 ? 514 100.0 15 1 3.950 4.260 ? ? ? 0.088 ? ? 2.047 12.50 ? 522 100.0 16 1 4.260 4.690 ? ? ? 0.082 ? ? 2.003 12.30 ? 513 100.0 17 1 4.690 5.360 ? ? ? 0.075 ? ? 2.071 11.90 ? 528 100.0 18 1 5.360 6.750 ? ? ? 0.075 ? ? 2.253 11.30 ? 543 99.8 19 1 6.750 50.000 ? ? ? 0.071 ? ? 2.647 9.70 ? 553 91.1 20 1 # _refine.entry_id 4E16 _refine.ls_d_res_high 2.490 _refine.ls_d_res_low 41.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.96 _refine.ls_number_reflns_obs 10064 _refine.ls_number_reflns_all 10064 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : RESIDUAL ONLY ; _refine.ls_R_factor_all 0.2069 _refine.ls_R_factor_obs 0.2069 _refine.ls_R_factor_R_work 0.2043 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2583 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 495 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 98.824 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 3.5300 _refine.aniso_B[2][2] 3.5300 _refine.aniso_B[3][3] -7.0600 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9630 _refine.correlation_coeff_Fo_to_Fc_free 0.9490 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.4390 _refine.pdbx_overall_ESU_R_Free 0.2830 _refine.overall_SU_ML 0.2800 _refine.overall_SU_B 29.9490 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3NDC' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 150.220 _refine.B_iso_min 22.260 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I 0 _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1773 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1773 _refine_hist.d_res_high 2.490 _refine_hist.d_res_low 41.0 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1799 0.015 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2432 1.983 1.977 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 227 7.306 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 74 43.537 26.081 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 336 22.457 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 5 31.485 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 287 0.121 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1306 0.008 0.021 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.490 _refine_ls_shell.d_res_low 2.555 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 92.82 _refine_ls_shell.number_reflns_R_work 545 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.4170 _refine_ls_shell.R_factor_R_free 0.5220 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 582 _refine_ls_shell.number_reflns_obs 582 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4E16 _struct.title 'Precorrin-4 C(11)-methyltransferase from Clostridium difficile' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4E16 _struct_keywords.text 'structural genomics, Center for Structural Genomics of Infectious Diseases, CSGID, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 16 ? ILE A 20 ? ASP A 13 ILE A 17 5 ? 5 HELX_P HELX_P2 2 THR A 21 ? ALA A 31 ? THR A 18 ALA A 28 1 ? 11 HELX_P HELX_P3 3 ASN A 42 ? CYS A 49 ? ASN A 39 CYS A 46 5 ? 8 HELX_P HELX_P4 4 ALA A 59 ? MET A 61 ? ALA A 56 MET A 58 5 ? 3 HELX_P HELX_P5 5 ASP A 62 ? ASN A 76 ? ASP A 59 ASN A 73 1 ? 15 HELX_P HELX_P6 6 SER A 93 ? ASN A 105 ? SER A 90 ASN A 102 1 ? 13 HELX_P HELX_P7 7 SER A 115 ? GLY A 125 ? SER A 112 GLY A 122 1 ? 11 HELX_P HELX_P8 8 PRO A 149 ? GLU A 152 ? PRO A 146 GLU A 149 5 ? 4 HELX_P HELX_P9 9 SER A 153 ? LYS A 159 ? SER A 150 LYS A 156 1 ? 7 HELX_P HELX_P10 10 GLU A 172 ? GLY A 183 ? GLU A 169 GLY A 180 1 ? 12 HELX_P HELX_P11 11 ASP A 211 ? ASN A 219 ? ASP A 208 ASN A 216 1 ? 9 HELX_P HELX_P12 12 ARG A 231 ? GLU A 235 ? ARG A 228 GLU A 232 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 54 ? ASN A 57 ? GLN A 51 ASN A 54 A 2 VAL A 33 ? TYR A 36 ? VAL A 30 TYR A 33 A 3 VAL A 80 ? GLN A 84 ? VAL A 77 GLN A 81 A 4 VAL A 7 ? GLY A 11 ? VAL A 4 GLY A 8 A 5 TYR A 108 ? THR A 111 ? TYR A 105 THR A 108 B 1 VAL A 137 ? ARG A 141 ? VAL A 134 ARG A 138 B 2 SER A 163 ? LEU A 168 ? SER A 160 LEU A 165 B 3 ALA A 225 ? VAL A 229 ? ALA A 222 VAL A 226 B 4 PRO A 190 ? TYR A 195 ? PRO A 187 TYR A 192 B 5 LYS A 203 ? THR A 208 ? LYS A 200 THR A 205 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 54 ? O GLN A 51 N VAL A 34 ? N VAL A 31 A 2 3 N VAL A 33 ? N VAL A 30 O VAL A 81 ? O VAL A 78 A 3 4 O VAL A 80 ? O VAL A 77 N HIS A 8 ? N HIS A 5 A 4 5 N PHE A 9 ? N PHE A 6 O ASP A 109 ? O ASP A 106 B 1 2 N THR A 140 ? N THR A 137 O VAL A 165 ? O VAL A 162 B 2 3 N ILE A 166 ? N ILE A 163 O ILE A 227 ? O ILE A 224 B 3 4 O MET A 228 ? O MET A 225 N ALA A 192 ? N ALA A 189 B 4 5 N VAL A 193 ? N VAL A 190 O VAL A 205 ? O VAL A 202 # _atom_sites.entry_id 4E16 _atom_sites.fract_transf_matrix[1][1] 0.016599 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016599 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006759 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MET 4 1 1 MET MET A . n A 1 5 ASN 5 2 2 ASN ASN A . n A 1 6 LYS 6 3 3 LYS LYS A . n A 1 7 VAL 7 4 4 VAL VAL A . n A 1 8 HIS 8 5 5 HIS HIS A . n A 1 9 PHE 9 6 6 PHE PHE A . n A 1 10 VAL 10 7 7 VAL VAL A . n A 1 11 GLY 11 8 8 GLY GLY A . n A 1 12 ALA 12 9 9 ALA ALA A . n A 1 13 GLY 13 10 10 GLY GLY A . n A 1 14 PRO 14 11 11 PRO PRO A . n A 1 15 GLY 15 12 12 GLY GLY A . n A 1 16 ASP 16 13 13 ASP ASP A . n A 1 17 LYS 17 14 14 LYS LYS A . n A 1 18 GLU 18 15 15 GLU GLU A . n A 1 19 LEU 19 16 16 LEU LEU A . n A 1 20 ILE 20 17 17 ILE ILE A . n A 1 21 THR 21 18 18 THR THR A . n A 1 22 LEU 22 19 19 LEU LEU A . n A 1 23 LYS 23 20 20 LYS LYS A . n A 1 24 GLY 24 21 21 GLY GLY A . n A 1 25 TYR 25 22 22 TYR TYR A . n A 1 26 LYS 26 23 23 LYS LYS A . n A 1 27 LEU 27 24 24 LEU LEU A . n A 1 28 LEU 28 25 25 LEU LEU A . n A 1 29 SER 29 26 26 SER SER A . n A 1 30 ASN 30 27 27 ASN ASN A . n A 1 31 ALA 31 28 28 ALA ALA A . n A 1 32 ASP 32 29 29 ASP ASP A . n A 1 33 VAL 33 30 30 VAL VAL A . n A 1 34 VAL 34 31 31 VAL VAL A . n A 1 35 ILE 35 32 32 ILE ILE A . n A 1 36 TYR 36 33 33 TYR TYR A . n A 1 37 ALA 37 34 34 ALA ALA A . n A 1 38 GLY 38 35 35 GLY GLY A . n A 1 39 SER 39 36 36 SER SER A . n A 1 40 LEU 40 37 37 LEU LEU A . n A 1 41 VAL 41 38 38 VAL VAL A . n A 1 42 ASN 42 39 39 ASN ASN A . n A 1 43 PRO 43 40 40 PRO PRO A . n A 1 44 GLU 44 41 41 GLU GLU A . n A 1 45 LEU 45 42 42 LEU LEU A . n A 1 46 LEU 46 43 43 LEU LEU A . n A 1 47 GLU 47 44 44 GLU GLU A . n A 1 48 TYR 48 45 45 TYR TYR A . n A 1 49 CYS 49 46 46 CYS CYS A . n A 1 50 LYS 50 47 47 LYS LYS A . n A 1 51 GLU 51 48 48 GLU GLU A . n A 1 52 ASP 52 49 49 ASP ASP A . n A 1 53 CYS 53 50 50 CYS CYS A . n A 1 54 GLN 54 51 51 GLN GLN A . n A 1 55 ILE 55 52 52 ILE ILE A . n A 1 56 HIS 56 53 53 HIS HIS A . n A 1 57 ASN 57 54 54 ASN ASN A . n A 1 58 SER 58 55 55 SER SER A . n A 1 59 ALA 59 56 56 ALA ALA A . n A 1 60 HIS 60 57 57 HIS HIS A . n A 1 61 MET 61 58 58 MET MET A . n A 1 62 ASP 62 59 59 ASP ASP A . n A 1 63 LEU 63 60 60 LEU LEU A . n A 1 64 GLN 64 61 61 GLN GLN A . n A 1 65 GLU 65 62 62 GLU GLU A . n A 1 66 ILE 66 63 63 ILE ILE A . n A 1 67 ILE 67 64 64 ILE ILE A . n A 1 68 ASP 68 65 65 ASP ASP A . n A 1 69 VAL 69 66 66 VAL VAL A . n A 1 70 MET 70 67 67 MET MET A . n A 1 71 ARG 71 68 68 ARG ARG A . n A 1 72 GLU 72 69 69 GLU GLU A . n A 1 73 GLY 73 70 70 GLY GLY A . n A 1 74 ILE 74 71 71 ILE ILE A . n A 1 75 GLU 75 72 72 GLU GLU A . n A 1 76 ASN 76 73 73 ASN ASN A . n A 1 77 ASN 77 74 74 ASN ASN A . n A 1 78 LYS 78 75 75 LYS LYS A . n A 1 79 SER 79 76 76 SER SER A . n A 1 80 VAL 80 77 77 VAL VAL A . n A 1 81 VAL 81 78 78 VAL VAL A . n A 1 82 ARG 82 79 79 ARG ARG A . n A 1 83 LEU 83 80 80 LEU LEU A . n A 1 84 GLN 84 81 81 GLN GLN A . n A 1 85 THR 85 82 82 THR THR A . n A 1 86 GLY 86 83 83 GLY GLY A . n A 1 87 ASP 87 84 84 ASP ASP A . n A 1 88 PHE 88 85 85 PHE PHE A . n A 1 89 SER 89 86 86 SER SER A . n A 1 90 ILE 90 87 87 ILE ILE A . n A 1 91 TYR 91 88 88 TYR TYR A . n A 1 92 GLY 92 89 89 GLY GLY A . n A 1 93 SER 93 90 90 SER SER A . n A 1 94 ILE 94 91 91 ILE ILE A . n A 1 95 ARG 95 92 92 ARG ARG A . n A 1 96 GLU 96 93 93 GLU GLU A . n A 1 97 GLN 97 94 94 GLN GLN A . n A 1 98 VAL 98 95 95 VAL VAL A . n A 1 99 GLU 99 96 96 GLU GLU A . n A 1 100 ASP 100 97 97 ASP ASP A . n A 1 101 LEU 101 98 98 LEU LEU A . n A 1 102 ASN 102 99 99 ASN ASN A . n A 1 103 LYS 103 100 100 LYS LYS A . n A 1 104 LEU 104 101 101 LEU LEU A . n A 1 105 ASN 105 102 102 ASN ASN A . n A 1 106 ILE 106 103 103 ILE ILE A . n A 1 107 ASP 107 104 104 ASP ASP A . n A 1 108 TYR 108 105 105 TYR TYR A . n A 1 109 ASP 109 106 106 ASP ASP A . n A 1 110 CYS 110 107 107 CYS CYS A . n A 1 111 THR 111 108 108 THR THR A . n A 1 112 PRO 112 109 109 PRO PRO A . n A 1 113 GLY 113 110 110 GLY GLY A . n A 1 114 VAL 114 111 111 VAL VAL A . n A 1 115 SER 115 112 112 SER SER A . n A 1 116 SER 116 113 113 SER SER A . n A 1 117 PHE 117 114 114 PHE PHE A . n A 1 118 LEU 118 115 115 LEU LEU A . n A 1 119 GLY 119 116 116 GLY GLY A . n A 1 120 ALA 120 117 117 ALA ALA A . n A 1 121 ALA 121 118 118 ALA ALA A . n A 1 122 SER 122 119 119 SER SER A . n A 1 123 SER 123 120 120 SER SER A . n A 1 124 LEU 124 121 121 LEU LEU A . n A 1 125 GLY 125 122 122 GLY GLY A . n A 1 126 VAL 126 123 123 VAL VAL A . n A 1 127 GLU 127 124 124 GLU GLU A . n A 1 128 TYR 128 125 125 TYR TYR A . n A 1 129 THR 129 126 126 THR THR A . n A 1 130 VAL 130 127 127 VAL VAL A . n A 1 131 PRO 131 128 128 PRO PRO A . n A 1 132 GLU 132 129 129 GLU GLU A . n A 1 133 ILE 133 130 130 ILE ILE A . n A 1 134 SER 134 131 131 SER SER A . n A 1 135 GLN 135 132 132 GLN GLN A . n A 1 136 SER 136 133 133 SER SER A . n A 1 137 VAL 137 134 134 VAL VAL A . n A 1 138 ILE 138 135 135 ILE ILE A . n A 1 139 ILE 139 136 136 ILE ILE A . n A 1 140 THR 140 137 137 THR THR A . n A 1 141 ARG 141 138 138 ARG ARG A . n A 1 142 MET 142 139 139 MET MET A . n A 1 143 GLU 143 140 ? ? ? A . n A 1 144 GLY 144 141 ? ? ? A . n A 1 145 ARG 145 142 ? ? ? A . n A 1 146 THR 146 143 143 THR THR A . n A 1 147 PRO 147 144 144 PRO PRO A . n A 1 148 VAL 148 145 145 VAL VAL A . n A 1 149 PRO 149 146 146 PRO PRO A . n A 1 150 GLU 150 147 147 GLU GLU A . n A 1 151 LYS 151 148 148 LYS LYS A . n A 1 152 GLU 152 149 149 GLU GLU A . n A 1 153 SER 153 150 150 SER SER A . n A 1 154 ILE 154 151 151 ILE ILE A . n A 1 155 GLN 155 152 152 GLN GLN A . n A 1 156 SER 156 153 153 SER SER A . n A 1 157 TYR 157 154 154 TYR TYR A . n A 1 158 ALA 158 155 155 ALA ALA A . n A 1 159 LYS 159 156 156 LYS LYS A . n A 1 160 HIS 160 157 157 HIS HIS A . n A 1 161 GLN 161 158 158 GLN GLN A . n A 1 162 THR 162 159 159 THR THR A . n A 1 163 SER 163 160 160 SER SER A . n A 1 164 MET 164 161 161 MET MET A . n A 1 165 VAL 165 162 162 VAL VAL A . n A 1 166 ILE 166 163 163 ILE ILE A . n A 1 167 PHE 167 164 164 PHE PHE A . n A 1 168 LEU 168 165 165 LEU LEU A . n A 1 169 SER 169 166 166 SER SER A . n A 1 170 VAL 170 167 167 VAL VAL A . n A 1 171 GLN 171 168 168 GLN GLN A . n A 1 172 GLU 172 169 169 GLU GLU A . n A 1 173 ILE 173 170 170 ILE ILE A . n A 1 174 GLU 174 171 171 GLU GLU A . n A 1 175 LYS 175 172 172 LYS LYS A . n A 1 176 VAL 176 173 173 VAL VAL A . n A 1 177 VAL 177 174 174 VAL VAL A . n A 1 178 SER 178 175 175 SER SER A . n A 1 179 LYS 179 176 176 LYS LYS A . n A 1 180 LEU 180 177 177 LEU LEU A . n A 1 181 LEU 181 178 178 LEU LEU A . n A 1 182 GLU 182 179 179 GLU GLU A . n A 1 183 GLY 183 180 180 GLY GLY A . n A 1 184 GLY 184 181 181 GLY GLY A . n A 1 185 TYR 185 182 182 TYR TYR A . n A 1 186 PRO 186 183 183 PRO PRO A . n A 1 187 LYS 187 184 184 LYS LYS A . n A 1 188 ASP 188 185 185 ASP ASP A . n A 1 189 THR 189 186 186 THR THR A . n A 1 190 PRO 190 187 187 PRO PRO A . n A 1 191 ILE 191 188 188 ILE ILE A . n A 1 192 ALA 192 189 189 ALA ALA A . n A 1 193 VAL 193 190 190 VAL VAL A . n A 1 194 ILE 194 191 191 ILE ILE A . n A 1 195 TYR 195 192 192 TYR TYR A . n A 1 196 LYS 196 193 193 LYS LYS A . n A 1 197 ALA 197 194 194 ALA ALA A . n A 1 198 THR 198 195 195 THR THR A . n A 1 199 TRP 199 196 196 TRP TRP A . n A 1 200 ALA 200 197 197 ALA ALA A . n A 1 201 ASP 201 198 198 ASP ASP A . n A 1 202 GLU 202 199 199 GLU GLU A . n A 1 203 LYS 203 200 200 LYS LYS A . n A 1 204 ILE 204 201 201 ILE ILE A . n A 1 205 VAL 205 202 202 VAL VAL A . n A 1 206 LYS 206 203 203 LYS LYS A . n A 1 207 GLY 207 204 204 GLY GLY A . n A 1 208 THR 208 205 205 THR THR A . n A 1 209 LEU 209 206 206 LEU LEU A . n A 1 210 SER 210 207 207 SER SER A . n A 1 211 ASP 211 208 208 ASP ASP A . n A 1 212 ILE 212 209 209 ILE ILE A . n A 1 213 ALA 213 210 210 ALA ALA A . n A 1 214 VAL 214 211 211 VAL VAL A . n A 1 215 LYS 215 212 212 LYS LYS A . n A 1 216 VAL 216 213 213 VAL VAL A . n A 1 217 LYS 217 214 214 LYS LYS A . n A 1 218 GLU 218 215 215 GLU GLU A . n A 1 219 ASN 219 216 216 ASN ASN A . n A 1 220 ASN 220 217 217 ASN ASN A . n A 1 221 ILE 221 218 218 ILE ILE A . n A 1 222 ASN 222 219 219 ASN ASN A . n A 1 223 LYS 223 220 220 LYS LYS A . n A 1 224 THR 224 221 221 THR THR A . n A 1 225 ALA 225 222 222 ALA ALA A . n A 1 226 LEU 226 223 223 LEU LEU A . n A 1 227 ILE 227 224 224 ILE ILE A . n A 1 228 MET 228 225 225 MET MET A . n A 1 229 VAL 229 226 226 VAL VAL A . n A 1 230 GLY 230 227 227 GLY GLY A . n A 1 231 ARG 231 228 228 ARG ARG A . n A 1 232 PHE 232 229 229 PHE PHE A . n A 1 233 LEU 233 230 230 LEU LEU A . n A 1 234 GLY 234 231 231 GLY GLY A . n A 1 235 GLU 235 232 232 GLU GLU A . n A 1 236 GLU 236 233 ? ? ? A . n A 1 237 TYR 237 234 ? ? ? A . n A 1 238 ASN 238 235 ? ? ? A . n A 1 239 ASN 239 236 ? ? ? A . n A 1 240 SER 240 237 ? ? ? A . n A 1 241 LYS 241 238 ? ? ? A . n A 1 242 LEU 242 239 ? ? ? A . n A 1 243 TYR 243 240 ? ? ? A . n A 1 244 ASP 244 241 ? ? ? A . n A 1 245 LYS 245 242 ? ? ? A . n A 1 246 ASP 246 243 ? ? ? A . n A 1 247 PHE 247 244 ? ? ? A . n A 1 248 LYS 248 245 ? ? ? A . n A 1 249 HIS 249 246 ? ? ? A . n A 1 250 GLU 250 247 ? ? ? A . n A 1 251 TYR 251 248 ? ? ? A . n A 1 252 ARG 252 249 ? ? ? A . n A 1 253 GLY 253 250 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Center for Structural Genomics of Infectious Diseases' _pdbx_SG_project.initial_of_center CSGID # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4330 ? 1 MORE -18 ? 1 'SSA (A^2)' 19940 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-03-14 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 21.5528 _pdbx_refine_tls.origin_y 15.7019 _pdbx_refine_tls.origin_z 8.7240 _pdbx_refine_tls.T[1][1] 0.2850 _pdbx_refine_tls.T[2][2] 0.4526 _pdbx_refine_tls.T[3][3] 0.1820 _pdbx_refine_tls.T[1][2] 0.0561 _pdbx_refine_tls.T[1][3] -0.0344 _pdbx_refine_tls.T[2][3] 0.1303 _pdbx_refine_tls.L[1][1] 2.9020 _pdbx_refine_tls.L[2][2] 2.8836 _pdbx_refine_tls.L[3][3] 2.9465 _pdbx_refine_tls.L[1][2] 2.5366 _pdbx_refine_tls.L[1][3] 1.1964 _pdbx_refine_tls.L[2][3] 0.9896 _pdbx_refine_tls.S[1][1] 0.0222 _pdbx_refine_tls.S[2][2] 0.0543 _pdbx_refine_tls.S[3][3] -0.0765 _pdbx_refine_tls.S[1][2] -0.1750 _pdbx_refine_tls.S[1][3] -0.1817 _pdbx_refine_tls.S[2][3] 0.0134 _pdbx_refine_tls.S[2][1] 0.1878 _pdbx_refine_tls.S[3][1] 0.0966 _pdbx_refine_tls.S[3][2] 0.1445 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 232 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 REFMAC 5.6.0117 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 6 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 8 MOLREP . ? ? ? ? phasing ? ? ? 9 HKL-3000 . ? ? ? ? phasing ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 PRO _pdbx_validate_close_contact.auth_seq_id_1 183 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OG1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 THR _pdbx_validate_close_contact.auth_seq_id_2 186 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A HIS 5 ? ? CD2 A HIS 5 ? ? 1.416 1.354 0.062 0.009 N 2 1 CG A HIS 53 ? ? CD2 A HIS 53 ? ? 1.416 1.354 0.062 0.009 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 THR _pdbx_validate_rmsd_angle.auth_seq_id_1 143 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 144 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 144 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 128.43 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation 9.13 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 49 ? ? -106.72 45.94 2 1 LYS A 100 ? ? -24.57 -54.60 3 1 GLU A 129 ? ? 74.48 -5.69 4 1 LYS A 156 ? ? -34.04 -30.50 5 1 GLN A 158 ? ? 43.62 24.74 6 1 VAL A 167 ? ? 77.86 -38.94 7 1 THR A 195 ? ? 74.58 -2.01 8 1 ASN A 217 ? ? 52.30 -26.07 9 1 ILE A 218 ? ? -39.37 113.37 10 1 LYS A 220 ? ? 76.10 169.49 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A GLU 140 ? A GLU 143 5 1 Y 1 A GLY 141 ? A GLY 144 6 1 Y 1 A ARG 142 ? A ARG 145 7 1 Y 1 A GLU 233 ? A GLU 236 8 1 Y 1 A TYR 234 ? A TYR 237 9 1 Y 1 A ASN 235 ? A ASN 238 10 1 Y 1 A ASN 236 ? A ASN 239 11 1 Y 1 A SER 237 ? A SER 240 12 1 Y 1 A LYS 238 ? A LYS 241 13 1 Y 1 A LEU 239 ? A LEU 242 14 1 Y 1 A TYR 240 ? A TYR 243 15 1 Y 1 A ASP 241 ? A ASP 244 16 1 Y 1 A LYS 242 ? A LYS 245 17 1 Y 1 A ASP 243 ? A ASP 246 18 1 Y 1 A PHE 244 ? A PHE 247 19 1 Y 1 A LYS 245 ? A LYS 248 20 1 Y 1 A HIS 246 ? A HIS 249 21 1 Y 1 A GLU 247 ? A GLU 250 22 1 Y 1 A TYR 248 ? A TYR 251 23 1 Y 1 A ARG 249 ? A ARG 252 24 1 Y 1 A GLY 250 ? A GLY 253 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3NDC _pdbx_initial_refinement_model.details 'PDB ENTRY 3NDC' #