HEADER RNA BINDING PROTEIN 06-MAR-12 4E1B TITLE RE-REFINEMENT OF PDB ENTRY 2EQA - SUA5 PROTEIN FROM SULFOLOBUS TITLE 2 TOKODAII WITH BOUND THREONYLCARBAMOYLADENYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: YRDC/SUA5 FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN ST1546; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS TOKODAII; SOURCE 3 ORGANISM_TAXID: 273063; SOURCE 4 STRAIN: DSM 16993 / JCM 10545 / NBRC 100140 / 7; SOURCE 5 GENE: STK_15260, SUA5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL-X; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS YRDC/RIBB FOLD, YRDC DOMAIN, SUA5 DOMAIN, TRNA MODIFICATION T6A, RNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.PARTHIER,S.GOERLICH,F.JAENECKE,C.BREITHAUPT,U.BRAEUER,U.FANDRICH, AUTHOR 2 D.CLAUSNITZER,U.F.WEHMEIER,C.BOETTCHER,D.SCHEEL,M.T.STUBBS REVDAT 2 02-MAY-12 4E1B 1 JRNL REVDAT 1 14-MAR-12 4E1B 0 JRNL AUTH C.PARTHIER,S.GORLICH,F.JAENECKE,C.BREITHAUPT,U.BRAUER, JRNL AUTH 2 U.FANDRICH,D.CLAUSNITZER,U.F.WEHMEIER,C.BOTTCHER,D.SCHEEL, JRNL AUTH 3 M.T.STUBBS JRNL TITL THE O-CARBAMOYLTRANSFERASE TOBZ CATALYZES AN ANCIENT JRNL TITL 2 ENZYMATIC REACTION. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 51 4046 2012 JRNL REFN ISSN 1433-7851 JRNL PMID 22383337 JRNL DOI 10.1002/ANIE.201108896 REMARK 0 REMARK 0 THIS ENTRY 4E1B REFLECTS AN ALTERNATIVE MODELING OF THE ORIGINAL REMARK 0 STRUCTURAL DATA OF R2EQASF DETERMINED BY THE AUTHORS OF THE PDB REMARK 0 ENTRY 2EQA: Y.AGARI,A.SHINKAI,S.YOKOYAMA,S.KURAMITSU,RIKEN REMARK 0 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REMARK 0 REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 PDB ID: 2EQA REMARK 0 AUTH Y.AGARI,S.SATO,T.WAKAMATSU,Y.BESSHO,A.EBIHARA,S.YOKOYAMA, REMARK 0 AUTH 2 S.KURAMITSU,A.SHINKAI REMARK 0 TITL X-RAY CRYSTAL STRUCTURE OF A HYPOTHETICAL SUA5 PROTEIN FROM REMARK 0 TITL 2 SULFOLOBUS TOKODAII STRAIN 7. REMARK 0 REF PROTEINS V. 70 1108 2008 REMARK 0 REFN ISSN 0887-3585 REMARK 0 PMID 18004774 REMARK 0 DOI 10.1002/PROT.21794 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 29361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3249 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2146 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 249 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2564 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.240 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2647 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3601 ; 2.277 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ; 6.613 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;31.082 ;24.579 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 462 ;13.435 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;12.952 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 429 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1935 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1647 ; 1.302 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2683 ; 2.211 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1000 ; 3.563 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 915 ; 5.668 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4E1B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-12. REMARK 100 THE RCSB ID CODE IS RCSB071043. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 2EQA. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.69550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.42150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.69550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.42150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.69550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.42150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.69550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.42150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 PRO A 191 REMARK 465 PRO A 215 REMARK 465 GLU A 216 REMARK 465 PHE A 217 REMARK 465 ALA A 218 REMARK 465 GLN A 219 REMARK 465 GLY A 220 REMARK 465 LYS A 221 REMARK 465 LYS A 222 REMARK 465 GLU A 223 REMARK 465 ALA A 224 REMARK 465 GLU A 225 REMARK 465 ILE A 226 REMARK 465 ALA A 227 REMARK 465 LEU A 228 REMARK 465 ALA A 229 REMARK 465 PRO A 230 REMARK 465 GLY A 231 REMARK 465 MSE A 232 REMARK 465 LYS A 233 REMARK 465 ILE A 352 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 TYR A 234 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 22 NH1 ARG A 25 1.94 REMARK 500 O SER A 260 O HOH A 2167 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 25 CG ARG A 25 CD 0.152 REMARK 500 GLU A 111 CB GLU A 111 CG 0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 62 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 36 -80.39 -102.22 REMARK 500 PRO A 97 48.82 -84.25 REMARK 500 GLU A 320 77.20 -102.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 144 OG REMARK 620 2 TXA A2002 OP3 84.7 REMARK 620 3 HOH A2132 O 106.0 87.8 REMARK 620 4 HOH A2123 O 88.8 114.4 154.7 REMARK 620 5 HOH A2107 O 82.8 161.1 82.0 79.7 REMARK 620 6 HOH A2253 O 159.2 83.6 90.6 80.5 112.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TXA A 2002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EQA RELATED DB: PDB REMARK 900 THIS ENTRY 4E1B REFLECTS AN ALTERNATIVE MODELLING OF X-RAY REMARK 900 DATA R2EQASF REMARK 900 RELATED ID: 3AJE RELATED DB: PDB DBREF 4E1B A 1 352 UNP Q970S6 Q970S6_SULTO 1 352 SEQRES 1 A 352 MSE THR GLN ILE ILE LYS ILE ASP PRO LEU ASN PRO GLU SEQRES 2 A 352 ILE ASP LYS ILE LYS ILE ALA ALA ASP VAL ILE ARG ASN SEQRES 3 A 352 GLY GLY THR VAL ALA PHE PRO THR GLU THR VAL TYR GLY SEQRES 4 A 352 LEU GLY ALA ASN ALA PHE ASP GLY ASN ALA CYS LEU LYS SEQRES 5 A 352 ILE PHE GLN ALA LYS ASN ARG PRO VAL ASP ASN PRO LEU SEQRES 6 A 352 ILE VAL HIS ILE ALA ASP PHE ASN GLN LEU PHE GLU VAL SEQRES 7 A 352 ALA LYS ASP ILE PRO ASP LYS VAL LEU GLU ILE ALA GLN SEQRES 8 A 352 ILE VAL TRP PRO GLY PRO LEU THR PHE VAL LEU LYS LYS SEQRES 9 A 352 THR GLU ARG VAL PRO LYS GLU VAL THR ALA GLY LEU ASP SEQRES 10 A 352 THR VAL ALA VAL ARG MSE PRO ALA HIS PRO ILE ALA LEU SEQRES 11 A 352 GLN LEU ILE ARG GLU SER GLY VAL PRO ILE ALA ALA PRO SEQRES 12 A 352 SER ALA ASN LEU ALA THR ARG PRO SER PRO THR LYS ALA SEQRES 13 A 352 GLU ASP VAL ILE VAL ASP LEU ASN GLY ARG VAL ASP VAL SEQRES 14 A 352 ILE ILE ASP GLY GLY HIS THR PHE PHE GLY VAL GLU SER SEQRES 15 A 352 THR ILE ILE ASN VAL THR VAL GLU PRO PRO VAL LEU LEU SEQRES 16 A 352 ARG PRO GLY PRO PHE THR ILE GLU GLU LEU LYS LYS LEU SEQRES 17 A 352 PHE GLY GLU ILE VAL ILE PRO GLU PHE ALA GLN GLY LYS SEQRES 18 A 352 LYS GLU ALA GLU ILE ALA LEU ALA PRO GLY MSE LYS TYR SEQRES 19 A 352 LYS HIS TYR ALA PRO ASN THR ARG LEU LEU LEU VAL GLU SEQRES 20 A 352 ASN ARG ASN ILE PHE LYS ASP VAL VAL SER LEU LEU SER SEQRES 21 A 352 LYS LYS TYR LYS VAL ALA LEU LEU ILE PRO LYS GLU LEU SEQRES 22 A 352 SER LYS GLU PHE GLU GLY LEU GLN GLN ILE ILE LEU GLY SEQRES 23 A 352 SER ASP GLU ASN LEU TYR GLU VAL ALA ARG ASN LEU PHE SEQRES 24 A 352 ASP SER PHE ARG GLU LEU ASP LYS LEU ASN VAL ASP LEU SEQRES 25 A 352 GLY ILE MSE ILE GLY PHE PRO GLU ARG GLY ILE GLY PHE SEQRES 26 A 352 ALA ILE MSE ASN ARG ALA ARG LYS ALA SER GLY PHE SER SEQRES 27 A 352 ILE ILE LYS ALA ILE SER ASP VAL TYR LYS TYR VAL ASN SEQRES 28 A 352 ILE MODRES 4E1B MSE A 123 MET SELENOMETHIONINE MODRES 4E1B MSE A 315 MET SELENOMETHIONINE MODRES 4E1B MSE A 328 MET SELENOMETHIONINE HET MSE A 123 8 HET MSE A 315 8 HET MSE A 328 8 HET MG A2001 1 HET TXA A2002 33 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM TXA THREONYLCARBAMOYLADENYLATE FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 TXA C15 H21 N6 O11 P FORMUL 4 HOH *178(H2 O) HELIX 1 1 GLU A 13 ASN A 26 1 14 HELIX 2 2 ASP A 46 ASN A 58 1 13 HELIX 3 3 ASP A 71 VAL A 78 1 8 HELIX 4 4 PRO A 83 TRP A 94 1 12 HELIX 5 5 PRO A 109 ALA A 114 1 6 HELIX 6 6 HIS A 126 GLY A 137 1 12 HELIX 7 7 LYS A 155 ASN A 164 1 10 HELIX 8 8 THR A 201 PHE A 209 1 9 HELIX 9 9 ASN A 248 ASN A 250 5 3 HELIX 10 10 ILE A 251 LYS A 261 1 11 HELIX 11 11 GLU A 272 GLU A 278 5 7 HELIX 12 12 ASN A 290 LEU A 308 1 19 HELIX 13 13 ILE A 323 SER A 335 1 13 HELIX 14 14 ALA A 342 TYR A 349 5 8 SHEET 1 A 9 GLN A 3 LYS A 6 0 SHEET 2 A 9 VAL A 169 ASP A 172 1 O ILE A 170 N ILE A 5 SHEET 3 A 9 VAL A 30 PHE A 32 1 N ALA A 31 O VAL A 169 SHEET 4 A 9 GLY A 39 ASN A 43 -1 O GLY A 41 N VAL A 30 SHEET 5 A 9 ILE A 140 ALA A 142 -1 O ALA A 141 N ALA A 42 SHEET 6 A 9 ILE A 66 HIS A 68 -1 N HIS A 68 O ILE A 140 SHEET 7 A 9 THR A 118 ARG A 122 1 O ALA A 120 N VAL A 67 SHEET 8 A 9 LEU A 98 LYS A 104 -1 N LEU A 102 O VAL A 119 SHEET 9 A 9 ALA A 79 LYS A 80 -1 N LYS A 80 O LYS A 103 SHEET 1 B10 GLN A 3 LYS A 6 0 SHEET 2 B10 VAL A 169 ASP A 172 1 O ILE A 170 N ILE A 5 SHEET 3 B10 VAL A 30 PHE A 32 1 N ALA A 31 O VAL A 169 SHEET 4 B10 GLY A 39 ASN A 43 -1 O GLY A 41 N VAL A 30 SHEET 5 B10 ILE A 140 ALA A 142 -1 O ALA A 141 N ALA A 42 SHEET 6 B10 ILE A 66 HIS A 68 -1 N HIS A 68 O ILE A 140 SHEET 7 B10 THR A 118 ARG A 122 1 O ALA A 120 N VAL A 67 SHEET 8 B10 LEU A 98 LYS A 104 -1 N LEU A 102 O VAL A 119 SHEET 9 B10 THR A 183 ASN A 186 1 O THR A 183 N THR A 99 SHEET 10 B10 VAL A 193 ARG A 196 -1 O VAL A 193 N ASN A 186 SHEET 1 C 5 GLN A 281 GLY A 286 0 SHEET 2 C 5 VAL A 265 PRO A 270 1 N ILE A 269 O LEU A 285 SHEET 3 C 5 LEU A 312 ILE A 316 1 O ILE A 314 N ALA A 266 SHEET 4 C 5 ARG A 242 VAL A 246 1 N ARG A 242 O GLY A 313 SHEET 5 C 5 ILE A 339 ILE A 340 1 O ILE A 340 N LEU A 245 LINK C ARG A 122 N MSE A 123 1555 1555 1.32 LINK C MSE A 123 N PRO A 124 1555 1555 1.36 LINK C ILE A 314 N MSE A 315 1555 1555 1.34 LINK C MSE A 315 N ILE A 316 1555 1555 1.33 LINK C ILE A 327 N MSE A 328 1555 1555 1.33 LINK C MSE A 328 N ASN A 329 1555 1555 1.34 LINK OG SER A 144 MG MG A2001 1555 1555 2.22 LINK MG MG A2001 OP3 TXA A2002 1555 1555 2.33 LINK MG MG A2001 O HOH A2132 1555 1555 2.41 LINK MG MG A2001 O HOH A2123 1555 1555 2.47 LINK MG MG A2001 O HOH A2107 1555 1555 2.49 LINK MG MG A2001 O HOH A2253 1555 1555 2.65 CISPEP 1 TRP A 94 PRO A 95 0 -4.77 CISPEP 2 ALA A 238 PRO A 239 0 13.59 SITE 1 AC1 6 SER A 144 TXA A2002 HOH A2107 HOH A2123 SITE 2 AC1 6 HOH A2132 HOH A2253 SITE 1 AC2 24 THR A 36 GLY A 39 ARG A 59 ASN A 63 SITE 2 AC2 24 PRO A 64 LEU A 65 ILE A 66 HIS A 68 SITE 3 AC2 24 THR A 118 ALA A 120 ARG A 122 PRO A 143 SITE 4 AC2 24 SER A 144 GLU A 181 SER A 182 ILE A 184 SITE 5 AC2 24 LEU A 195 ARG A 196 MG A2001 HOH A2102 SITE 6 AC2 24 HOH A2132 HOH A2202 HOH A2272 HOH A2273 CRYST1 85.391 120.843 67.552 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011711 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008275 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014803 0.00000