HEADER TOXIN 06-MAR-12 4E1D TITLE STRUCTURE OF A VGRG VIBRIO CHOLERAE TOXIN ACD DOMAIN IN COMPLEX WITH TITLE 2 ADP AND MN++ COMPND MOL_ID: 1; COMPND 2 MOLECULE: VGRG PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: VIBRIO CHOLERAE VGRG1 ACD (UNP RESIDUES 716-1111); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: O395; SOURCE 5 GENE: VC_1416, VGRG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PETG20A KEYWDS ALPHA BETA PROTEIN, G-ACTIN CROSS-LINKING TOXIN, G-ACTIN (SUBSTRATE), KEYWDS 2 TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR E.DURAND,G.AUDOLY,E.DERREZ,S.SPINELLI,M.ORTIZ-LOMBARDIA,E.CASCALES, AUTHOR 2 D.RAOULT,C.CAMBILLAU REVDAT 2 13-SEP-23 4E1D 1 REMARK LINK REVDAT 1 29-AUG-12 4E1D 0 JRNL AUTH E.DURAND,G.AUDOLY,E.DERREZ,S.SPINELLI,M.ORTIZ-LOMBARDIA, JRNL AUTH 2 E.CASCALES,D.RAOULT,C.CAMBILLAU JRNL TITL STRUCTURE AND FUNCTIONAL CHARACTERIZATION OF THE VIBRIO JRNL TITL 2 CHOLERAE TOXIN FROM THE VGRG/MARTX FAMILY. JRNL REF J.BIOL.CHEM. 2012 JRNL REFN ESSN 1083-351X REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 22761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.180 REMARK 3 FREE R VALUE TEST SET COUNT : 951 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.81 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2920 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2317 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2799 REMARK 3 BIN R VALUE (WORKING SET) : 0.2304 REMARK 3 BIN FREE R VALUE : 0.2615 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.14 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 121 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2757 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.49870 REMARK 3 B22 (A**2) : -5.49870 REMARK 3 B33 (A**2) : 10.99740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.360 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.290 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.825 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.801 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2885 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3927 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 990 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 80 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 422 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2885 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 385 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3326 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.47 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.44 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|0 - A|17 } REMARK 3 ORIGIN FOR THE GROUP (A): 34.4052 89.1664 16.5802 REMARK 3 T TENSOR REMARK 3 T11: 0.0061 T22: 0.0171 REMARK 3 T33: 0.0137 T12: 0.0048 REMARK 3 T13: 0.0014 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 0.2548 L22: 0.2619 REMARK 3 L33: 0.1581 L12: 0.2312 REMARK 3 L13: 0.1600 L23: -0.2428 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.0017 S13: -0.0026 REMARK 3 S21: 0.0080 S22: 0.0019 S23: -0.0039 REMARK 3 S31: 0.0024 S32: -0.0066 S33: -0.0026 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|18 - A|53 } REMARK 3 ORIGIN FOR THE GROUP (A): 46.0951 89.9733 6.2790 REMARK 3 T TENSOR REMARK 3 T11: -0.0518 T22: 0.0135 REMARK 3 T33: 0.0272 T12: -0.0164 REMARK 3 T13: -0.0090 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.5591 L22: 0.0000 REMARK 3 L33: 0.0000 L12: -0.1479 REMARK 3 L13: -0.2740 L23: 0.2767 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0094 S13: 0.0006 REMARK 3 S21: 0.0158 S22: 0.0043 S23: 0.0009 REMARK 3 S31: -0.0017 S32: -0.0048 S33: -0.0043 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|54 - A|78 } REMARK 3 ORIGIN FOR THE GROUP (A): 55.2347 88.0492 -7.2223 REMARK 3 T TENSOR REMARK 3 T11: -0.0317 T22: -0.0088 REMARK 3 T33: 0.0180 T12: -0.0199 REMARK 3 T13: 0.0092 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.0344 L22: 0.1186 REMARK 3 L33: 0.0000 L12: 0.0439 REMARK 3 L13: -0.1146 L23: -0.0197 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: 0.0060 S13: -0.0066 REMARK 3 S21: -0.0023 S22: 0.0050 S23: -0.0003 REMARK 3 S31: -0.0024 S32: 0.0068 S33: -0.0048 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|79 - A|116 } REMARK 3 ORIGIN FOR THE GROUP (A): 46.4972 98.5248 11.3811 REMARK 3 T TENSOR REMARK 3 T11: -0.0398 T22: 0.0088 REMARK 3 T33: 0.0019 T12: -0.0021 REMARK 3 T13: -0.0105 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.0010 L22: 0.0033 REMARK 3 L33: 0.0073 L12: -0.2173 REMARK 3 L13: 0.2039 L23: -0.1842 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: -0.0215 S13: 0.0081 REMARK 3 S21: 0.0152 S22: -0.0015 S23: -0.0074 REMARK 3 S31: -0.0049 S32: -0.0263 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|117 - A|143 } REMARK 3 ORIGIN FOR THE GROUP (A): 54.1639 93.1939 9.5281 REMARK 3 T TENSOR REMARK 3 T11: -0.0246 T22: 0.0143 REMARK 3 T33: 0.0044 T12: -0.0001 REMARK 3 T13: -0.0017 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.1414 L22: 0.0000 REMARK 3 L33: 0.0004 L12: -0.3474 REMARK 3 L13: -0.1336 L23: 0.0290 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.0130 S13: -0.0039 REMARK 3 S21: 0.0134 S22: -0.0011 S23: -0.0020 REMARK 3 S31: -0.0017 S32: 0.0020 S33: 0.0006 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|144 - A|170 } REMARK 3 ORIGIN FOR THE GROUP (A): 40.7538 99.1257 2.9213 REMARK 3 T TENSOR REMARK 3 T11: -0.0259 T22: -0.0097 REMARK 3 T33: 0.0105 T12: -0.0121 REMARK 3 T13: 0.0119 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.1848 L22: 0.0090 REMARK 3 L33: 0.1118 L12: -0.1632 REMARK 3 L13: 0.4357 L23: -0.4619 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: -0.0105 S13: -0.0024 REMARK 3 S21: -0.0051 S22: 0.0035 S23: -0.0124 REMARK 3 S31: -0.0032 S32: -0.0158 S33: -0.0044 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|171 - A|206 } REMARK 3 ORIGIN FOR THE GROUP (A): 9.2846 91.3206 13.2702 REMARK 3 T TENSOR REMARK 3 T11: -0.0647 T22: 0.0512 REMARK 3 T33: 0.0055 T12: 0.0100 REMARK 3 T13: 0.0036 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.3729 L22: 0.0000 REMARK 3 L33: 0.1947 L12: -0.1454 REMARK 3 L13: -0.1217 L23: 0.0427 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: -0.0082 S13: 0.0002 REMARK 3 S21: 0.0051 S22: 0.0000 S23: 0.0038 REMARK 3 S31: -0.0072 S32: -0.0039 S33: -0.0012 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { A|207 - A|236 } REMARK 3 ORIGIN FOR THE GROUP (A): 12.4122 85.7006 4.0558 REMARK 3 T TENSOR REMARK 3 T11: -0.0801 T22: 0.0222 REMARK 3 T33: 0.0140 T12: 0.0139 REMARK 3 T13: -0.0083 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.3834 L22: 0.0000 REMARK 3 L33: 0.0004 L12: -0.9379 REMARK 3 L13: 0.1333 L23: -0.3339 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: -0.0249 S13: 0.0035 REMARK 3 S21: 0.0211 S22: -0.0081 S23: -0.0065 REMARK 3 S31: -0.0013 S32: -0.0103 S33: 0.0043 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { A|237 - A|269 } REMARK 3 ORIGIN FOR THE GROUP (A): 20.5665 85.9637 -7.0358 REMARK 3 T TENSOR REMARK 3 T11: -0.0439 T22: 0.0023 REMARK 3 T33: 0.0140 T12: 0.0069 REMARK 3 T13: -0.0071 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.5110 L22: 0.0000 REMARK 3 L33: 0.0009 L12: -0.0446 REMARK 3 L13: -0.2718 L23: 0.1387 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: -0.0070 S13: 0.0039 REMARK 3 S21: -0.0012 S22: -0.0023 S23: -0.0050 REMARK 3 S31: 0.0076 S32: 0.0032 S33: 0.0026 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { A|270 - A|319 } REMARK 3 ORIGIN FOR THE GROUP (A): 11.9668 78.3427 4.7469 REMARK 3 T TENSOR REMARK 3 T11: -0.0810 T22: 0.0471 REMARK 3 T33: 0.0159 T12: -0.0482 REMARK 3 T13: -0.0172 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 0.9032 L22: 0.0000 REMARK 3 L33: 0.3228 L12: 0.0577 REMARK 3 L13: -0.2551 L23: -1.3437 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.0034 S13: -0.0116 REMARK 3 S21: 0.0344 S22: -0.0079 S23: -0.0019 REMARK 3 S31: 0.0151 S32: -0.0106 S33: 0.0057 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: { A|320 - A|343 } REMARK 3 ORIGIN FOR THE GROUP (A): 26.1770 86.6694 15.8146 REMARK 3 T TENSOR REMARK 3 T11: -0.0217 T22: 0.0210 REMARK 3 T33: 0.0064 T12: -0.0185 REMARK 3 T13: -0.0079 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.4644 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.1431 REMARK 3 L13: 0.0950 L23: -0.2806 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: -0.0158 S13: 0.0026 REMARK 3 S21: 0.0222 S22: -0.0001 S23: 0.0028 REMARK 3 S31: 0.0063 S32: -0.0063 S33: -0.0007 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: { A|344 - A|355 } REMARK 3 ORIGIN FOR THE GROUP (A): 32.6212 105.0237 10.6475 REMARK 3 T TENSOR REMARK 3 T11: -0.0111 T22: 0.0009 REMARK 3 T33: 0.0085 T12: -0.0005 REMARK 3 T13: 0.0053 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.0405 L22: 0.1189 REMARK 3 L33: 0.0000 L12: -0.0868 REMARK 3 L13: 0.0190 L23: -0.0005 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: -0.0028 S13: 0.0002 REMARK 3 S21: 0.0015 S22: 0.0005 S23: 0.0020 REMARK 3 S31: -0.0020 S32: -0.0020 S33: -0.0002 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: { A|401 - A|401 } REMARK 3 ORIGIN FOR THE GROUP (A): 33.5670 88.7836 10.1476 REMARK 3 T TENSOR REMARK 3 T11: 0.0195 T22: 0.0225 REMARK 3 T33: 0.0160 T12: -0.0006 REMARK 3 T13: -0.0018 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.0786 L22: 0.0947 REMARK 3 L33: 0.0212 L12: 0.0036 REMARK 3 L13: 0.0458 L23: -0.0318 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.0012 S13: -0.0023 REMARK 3 S21: -0.0014 S22: 0.0011 S23: 0.0007 REMARK 3 S31: 0.0008 S32: 0.0004 S33: -0.0006 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4E1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42340 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4E1C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.36000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.54000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.18000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.36000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 19.18000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.54000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A -11 REMARK 465 ALA A -10 REMARK 465 GLN A -9 REMARK 465 PRO A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 GLY A -5 REMARK 465 ARG A -4 REMARK 465 SER A -3 REMARK 465 THR A -2 REMARK 465 LYS A -1 REMARK 465 SER A 356 REMARK 465 THR A 357 REMARK 465 THR A 358 REMARK 465 LYS A 359 REMARK 465 SER A 360 REMARK 465 GLU A 361 REMARK 465 VAL A 362 REMARK 465 LYS A 363 REMARK 465 LEU A 364 REMARK 465 LEU A 365 REMARK 465 ASP A 366 REMARK 465 GLN A 367 REMARK 465 PHE A 368 REMARK 465 ASP A 369 REMARK 465 PRO A 370 REMARK 465 MET A 371 REMARK 465 LYS A 372 REMARK 465 ARG A 373 REMARK 465 LYS A 374 REMARK 465 THR A 375 REMARK 465 VAL A 376 REMARK 465 ILE A 377 REMARK 465 GLN A 378 REMARK 465 GLN A 379 REMARK 465 VAL A 380 REMARK 465 GLU A 381 REMARK 465 SER A 382 REMARK 465 LEU A 383 REMARK 465 VAL A 384 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 355 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 10 -152.64 -134.03 REMARK 500 ASP A 51 -93.95 -117.88 REMARK 500 ASN A 238 -111.80 49.20 REMARK 500 GLU A 264 -61.44 72.92 REMARK 500 ALA A 317 73.07 -151.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 16 OE2 REMARK 620 2 GLN A 162 OE1 109.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 16 OE2 REMARK 620 2 GLU A 78 OE1 102.0 REMARK 620 3 ADP A 401 O3B 71.6 170.0 REMARK 620 4 ADP A 401 O2A 100.0 105.3 83.7 REMARK 620 5 HOH A 636 O 105.7 92.6 82.0 144.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DTD RELATED DB: PDB REMARK 900 RELATED ID: 4DTF RELATED DB: PDB REMARK 900 RELATED ID: 4DTH RELATED DB: PDB REMARK 900 RELATED ID: 4DTL RELATED DB: PDB REMARK 900 RELATED ID: 4E1C RELATED DB: PDB REMARK 900 RELATED ID: 4E1F RELATED DB: PDB DBREF 4E1D A -10 384 UNP Q9KS45 Q9KS45_VIBCH 717 1111 SEQRES 1 A 396 ASN ALA GLN PRO ASN LEU GLY ARG SER THR LYS ALA THR SEQRES 2 A 396 PRO ASP PHE PRO THR HIS PHE PRO LYS SER SER ILE GLY SEQRES 3 A 396 ILE GLU ASN GLU LEU ALA GLY LEU VAL VAL ALA MET PRO SEQRES 4 A 396 ALA ASN SER ALA GLN LYS PHE GLY TYR VAL LYS SER ALA SEQRES 5 A 396 GLN GLY ASP ALA LEU PHE MET LEU THR LYS ASP MET ASN SEQRES 6 A 396 GLN GLY SER TYR GLN ARG PRO PRO SER LEU GLN ASP GLY SEQRES 7 A 396 LYS ASN TYR GLN ASN TRP GLN THR HIS THR VAL GLU LEU SEQRES 8 A 396 VAL SER TYR PRO CYS GLU MET ASP ASP LYS ALA ALA VAL SEQRES 9 A 396 GLU THR ARG LYS GLN ALA MET LEU TRP LEU ALA THR HIS SEQRES 10 A 396 PHE THR THR HIS ILE ASP GLN SER ASN HIS GLN PRO LEU SEQRES 11 A 396 ALA PRO ILE GLN SER GLU ASP GLY ARG PHE VAL ILE GLU SEQRES 12 A 396 ILE THR ASN ALA LYS HIS VAL ILE ALA ALA GLY ASN GLY SEQRES 13 A 396 ILE SER ALA GLU SER GLN GLY GLN THR ILE THR MET THR SEQRES 14 A 396 PRO SER GLY GLN GLN ALA THR VAL GLY VAL ALA ALA LYS SEQRES 15 A 396 GLY PHE GLY THR SER ALA THR PRO GLU LEU ARG LEU LEU SEQRES 16 A 396 GLU SER ALA PRO TRP TYR GLN LYS SER LEU LYS SER GLN SEQRES 17 A 396 PHE ALA SER LEU THR SER ALA GLU ASN LEU ASP ASP LYS SEQRES 18 A 396 GLU LEU ALA ALA ASN VAL PHE ALA TYR LEU THR SER ILE SEQRES 19 A 396 TYR LEU LYS THR ALA GLU LEU ALA LYS LYS PHE GLY ILE SEQRES 20 A 396 TYR ILE ASN GLU TRP ASP PRO MET SER GLU GLN ILE THR SEQRES 21 A 396 PRO ASN ALA ASN GLY LEU THR ASP PRO LYS VAL LYS ASN SEQRES 22 A 396 ALA TRP GLU ILE LEU PRO ARG THR LYS PRO SER LYS ILE SEQRES 23 A 396 VAL GLU ILE LEU SER LYS SER ASP ALA LYS ALA VAL MET SEQRES 24 A 396 LYS HIS ILE LYS PRO GLN LEU GLN SER ARG TYR SER GLU SEQRES 25 A 396 SER LEU SER LYS ASN VAL PHE GLN TYR PHE GLN ASP GLY SEQRES 26 A 396 GLY GLU VAL ALA GLY HIS GLY ILE ASN ASN ALA THR VAL SEQRES 27 A 396 GLY ASP LYS HIS SER PRO GLU LEU ALA ILE LEU PHE GLU SEQRES 28 A 396 PHE ARG THR VAL PRO ASN GLU LEU GLN SER TYR LEU PRO SEQRES 29 A 396 LYS THR GLU SER THR THR LYS SER GLU VAL LYS LEU LEU SEQRES 30 A 396 ASP GLN PHE ASP PRO MET LYS ARG LYS THR VAL ILE GLN SEQRES 31 A 396 GLN VAL GLU SER LEU VAL HET ADP A 401 27 HET MN A 402 1 HET MN A 403 1 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MN 2(MN 2+) FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *136(H2 O) HELIX 1 1 PRO A 60 GLN A 64 5 5 HELIX 2 2 ASP A 88 SER A 113 1 26 HELIX 3 3 THR A 157 SER A 159 5 3 HELIX 4 4 LYS A 170 PHE A 172 5 3 HELIX 5 5 THR A 177 SER A 185 1 9 HELIX 6 6 LYS A 191 THR A 201 1 11 HELIX 7 7 ASP A 208 GLY A 234 1 27 HELIX 8 8 ASP A 241 GLN A 246 5 6 HELIX 9 9 ASP A 256 GLU A 264 1 9 HELIX 10 10 LYS A 270 LEU A 278 5 9 HELIX 11 11 SER A 279 SER A 296 1 18 HELIX 12 12 SER A 299 ASP A 312 1 14 HELIX 13 13 PRO A 344 LEU A 351 5 8 LINK OE2 GLU A 16 MN MN A 402 1555 1555 2.67 LINK OE2 GLU A 16 MN MN A 403 1555 1555 2.21 LINK OE1 GLU A 78 MN MN A 403 1555 1555 2.53 LINK OE1 GLN A 162 MN MN A 402 1555 1555 2.68 LINK O3B ADP A 401 MN MN A 403 1555 1555 2.53 LINK O2A ADP A 401 MN MN A 403 1555 1555 2.71 LINK MN MN A 403 O HOH A 636 1555 1555 2.75 SITE 1 AC1 14 PHE A 4 SER A 12 GLY A 14 ILE A 15 SITE 2 AC1 14 GLU A 16 VAL A 80 SER A 81 PRO A 83 SITE 3 AC1 14 THR A 164 ARG A 268 LEU A 337 MN A 402 SITE 4 AC1 14 MN A 403 HOH A 563 SITE 1 AC2 4 GLU A 16 GLN A 162 GLU A 339 ADP A 401 SITE 1 AC3 4 GLU A 16 GLU A 78 ADP A 401 HOH A 636 SITE 1 AC4 4 PRO A 257 LYS A 260 ARG A 341 HOH A 630 SITE 1 AC5 6 GLY A 142 ASN A 143 GLY A 144 ILE A 145 SITE 2 AC5 6 SER A 146 HOH A 538 SITE 1 AC6 5 TRP A 101 HIS A 105 ILE A 121 GLU A 124 SITE 2 AC6 5 HOH A 629 CRYST1 128.390 128.390 76.720 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007789 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013034 0.00000